31 May 2022 16:12:32,052 INFO : Validating data for a ProteomeXchange submission.
31 May 2022 16:12:32,053 INFO : =======================================
31 May 2022 16:12:32,207 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
31 May 2022 16:12:32,208 INFO : Validating data for experiment Id: 1331, validation Id: 56
31 May 2022 16:12:32,308 INFO : Validating data for 6 Skyline documents in 6 folders
31 May 2022 16:12:32,392 INFO : Sample file validation for Skyline document: TripleTOF6600+_AutoQC_2021-06-04_11-55-17.sky.zip
31 May 2022 16:12:32,392 INFO : Found all sample files.
31 May 2022 16:12:32,482 INFO : Sample file validation for Skyline document: TripleTOF5600_AutoQC_2021-06-04_11-19-08.sky.zip
31 May 2022 16:12:32,482 INFO : MISSING SAMPLE FILES:
31 May 2022 16:12:32,482 INFO : LFQ_TT5600_AutoQC_GP_Micro_01.wiff
31 May 2022 16:12:32,482 INFO : LFQ_TT5600_AutoQC_GP_Micro_01.wiff.scan
31 May 2022 16:12:32,482 INFO : LFQ_TT5600_AutoQC_GP_Micro_02.wiff
31 May 2022 16:12:32,482 INFO : LFQ_TT5600_AutoQC_GP_Micro_02.wiff.scan
31 May 2022 16:12:32,482 INFO : LFQ_TT5600_AutoQC_GP_Micro_03.wiff
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_03.wiff.scan
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_04.wiff
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_04.wiff.scan
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_05.wiff
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_05.wiff.scan
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_06.wiff
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_06.wiff.scan
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_07.wiff
31 May 2022 16:12:32,483 INFO : LFQ_TT5600_AutoQC_GP_Micro_07.wiff.scan
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC01.wiff
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC01.wiff.scan
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC02.wiff
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC02.wiff.scan
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC03.wiff
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC03.wiff.scan
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC04.wiff
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC04.wiff.scan
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC05.wiff
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC05.wiff.scan
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC06.wiff
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC06.wiff.scan
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC07.wiff
31 May 2022 16:12:32,483 INFO : 190304_Parisa_Artemia_AutoQC07.wiff.scan
31 May 2022 16:12:32,536 INFO : Sample file validation for Skyline document: Synapt_G2Si_2021-08-17_15-40-26.sky.zip
31 May 2022 16:12:32,536 INFO : Found all sample files.
31 May 2022 16:12:34,053 INFO : Sample file validation for Skyline document: Synapt_XS_2021-06-09_15-30-35.sky.zip
31 May 2022 16:12:34,053 INFO : Found all sample files.
31 May 2022 16:12:35,263 INFO : Sample file validation for Skyline document: TimsTOFPro_AutoQC_2021-06-09_15-47-12.sky.zip
31 May 2022 16:12:35,263 INFO : Found all sample files.
31 May 2022 16:12:35,317 INFO : Sample file validation for Skyline document: AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip
31 May 2022 16:12:35,317 INFO : Found all sample files.
31 May 2022 16:12:35,402 INFO : Modifications validation:
31 May 2022 16:12:35,402 INFO : VALID MODIFICATIONS:
31 May 2022 16:12:35,402 INFO : 224: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
31 May 2022 16:12:35,402 INFO : TripleTOF6600+_AutoQC_2021-06-04_11-55-17.sky.zip
31 May 2022 16:12:35,402 INFO : TripleTOF5600_AutoQC_2021-06-04_11-19-08.sky.zip
31 May 2022 16:12:35,402 INFO : AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip
31 May 2022 16:12:35,402 INFO : Synapt_XS_2021-06-09_15-30-35.sky.zip
31 May 2022 16:12:35,402 INFO : Synapt_G2Si_2021-08-17_15-40-26.sky.zip
31 May 2022 16:12:35,402 INFO : TimsTOFPro_AutoQC_2021-06-09_15-47-12.sky.zip
31 May 2022 16:12:35,402 INFO : INVALID MODIFICATIONS (No Unimod ID):
31 May 2022 16:12:36,038 INFO : Spectral library validation:
31 May 2022 16:12:36,038 INFO : 'TripleTOF5600_AutoQC' (TripleTOF5600_AutoQC.blib) library in 1 Skyline documents was built with 13 raw files; 1 peptide Id files. Status: Missing spectrum and peptide Id files.
31 May 2022 16:12:36,038 INFO : MISSING FILES:
31 May 2022 16:12:36,038 INFO : Spectrum File: LFQ_TT5600_AutoQC_GP_Micro_01.wiff
31 May 2022 16:12:36,039 INFO : Spectrum File: LFQ_TT5600_AutoQC_GP_Micro_02.wiff
31 May 2022 16:12:36,039 INFO : Spectrum File: LFQ_TT5600_AutoQC_GP_Micro_03.wiff
31 May 2022 16:12:36,039 INFO : Spectrum File: LFQ_TT5600_AutoQC_GP_Micro_04.wiff
31 May 2022 16:12:36,039 INFO : Spectrum File: LFQ_TT5600_AutoQC_GP_Micro_05.wiff
31 May 2022 16:12:36,039 INFO : Spectrum File: LFQ_TT5600_AutoQC_GP_Micro_06.wiff
31 May 2022 16:12:36,039 INFO : Spectrum File: LFQ_TT5600_AutoQC_GP_Micro_07.wiff
31 May 2022 16:12:36,039 INFO : Peptide Id File: F008179.dat
31 May 2022 16:12:36,039 INFO : 'TimsTOFPro_AutoQC' (TimsTOFPro_AutoQC.blib) library in 1 Skyline documents was built with 1 raw files; 1 peptide Id files. Status: Missing spectrum and peptide Id files.
31 May 2022 16:12:36,039 INFO : MISSING FILES:
31 May 2022 16:12:36,039 INFO : Spectrum File: LFQ_timsTOFPro_PASEF_Standard_AutoQC_03_1_1_1695.d
31 May 2022 16:12:36,039 INFO : Peptide Id File: F008182.dat
31 May 2022 16:12:36,039 INFO : 'AutoQC_Peptide_Selection_first5proteins' (AutoQC_Peptide_Selection_first5proteins.blib) library in 1 Skyline documents was built with 9 raw files; 1 peptide Id files. Status: Missing spectrum and peptide Id files.
31 May 2022 16:12:36,039 INFO : MISSING FILES:
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_01.raw
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_01_conflict.raw
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_100.raw
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_104.raw
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_21.raw
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_47.raw
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_67.raw
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_89.raw
31 May 2022 16:12:36,039 INFO : Spectrum File: QHAGP210211_95.raw
31 May 2022 16:12:36,039 INFO : Peptide Id File: F007868.dat
31 May 2022 16:12:36,039 INFO : 'Synapt_G2Si' (Synapt_G2Si.blib) library in 1 Skyline documents was built with 1 raw files; 1 peptide Id files. Status: Missing spectrum and peptide Id files.
31 May 2022 16:12:36,039 INFO : MISSING FILES:
31 May 2022 16:12:36,039 INFO : Spectrum File: AutoQC_Synapt_G2Si.mgf
31 May 2022 16:12:36,039 INFO : Peptide Id File: F008369_SynaptG2Si.dat
31 May 2022 16:12:36,039 INFO : 'Synapt_XS' (Synapt_XS.blib) library in 1 Skyline documents was built with 1 raw files; 1 peptide Id files. Status: Missing spectrum and peptide Id files.
31 May 2022 16:12:36,039 INFO : MISSING FILES:
31 May 2022 16:12:36,039 INFO : Spectrum File: 20210604_SynaptXS_AutoQC.mgf
31 May 2022 16:12:36,039 INFO : Peptide Id File: F008370_SynaptXS.dat
31 May 2022 16:12:36,040 INFO : 'TripleTOF6600+_AutoQC' (TripleTOF6600+_AutoQC.blib) library in 1 Skyline documents was built with 1 raw files; 1 peptide Id files. Status: Missing peptide Id files.
31 May 2022 16:12:36,040 INFO : MISSING FILES:
31 May 2022 16:12:36,040 INFO : Peptide Id File: F007931.dat
31 May 2022 16:12:36,041 INFO : Data validation is complete. Status is NotValid
31 May 2022 16:12:36,041 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'