08 Oct 2021 17:07:32,091 INFO : Copying experiment "Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity" from folder /NCSU - Baker Lab/Smoke Inhalation and SRM 1950 to /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
08 Oct 2021 17:07:32,091 INFO : =======================================
08 Oct 2021 17:07:32,205 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
08 Oct 2021 17:07:32,206 INFO :
08 Oct 2021 17:07:32,206 INFO : Exporting experiment.
08 Oct 2021 17:08:27,209 INFO :
08 Oct 2021 17:08:27,209 INFO : Experiment export completed successfully.
08 Oct 2021 17:08:27,209 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
08 Oct 2021 17:08:27,254 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
08 Oct 2021 17:08:27,255 INFO :
08 Oct 2021 17:08:27,256 INFO : Importing experiment.
08 Oct 2021 17:08:27,265 INFO : Loading folder properties (folder type, settings and active modules)
08 Oct 2021 17:08:27,344 INFO : Done importing folder properties (folder type, settings and active modules)
08 Oct 2021 17:08:27,346 INFO : Loading etl definitions
08 Oct 2021 17:08:27,349 INFO : Loading wikis
08 Oct 2021 17:08:27,350 INFO : 0 wikis imported
08 Oct 2021 17:08:27,350 INFO : Done importing wikis
08 Oct 2021 17:08:27,350 INFO : Starting to copy files
08 Oct 2021 17:08:40,384 INFO : Copied 40 files
08 Oct 2021 17:08:40,384 INFO : Ensuring exp.data rows exist for imported files
08 Oct 2021 17:08:40,667 INFO : Starting Sample Type and Data Class import
08 Oct 2021 17:08:40,668 INFO : No types XAR file to process.
08 Oct 2021 17:08:40,668 INFO : Finished importing Sample Types and Data Classes
08 Oct 2021 17:08:40,670 INFO : Loading xar
08 Oct 2021 17:08:46,004 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:08:46,006 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:08:46,009 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:08:46,009 DEBUG: Protocol import complete
08 Oct 2021 17:08:46,011 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9186:Development+and+Application+of+Multidimensional+Lipid+Libraries+to+Investigate+Lipidomic+Dysregulation+Related+to+Smoke+Inhalation+Injury+Severity'
08 Oct 2021 17:08:46,011 DEBUG: Experiment/Run group import complete
08 Oct 2021 17:08:46,020 DEBUG: Protocol action set import complete
08 Oct 2021 17:08:46,032 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:08:46,042 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:4f9ad273-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,046 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:4f9ad25f-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,046 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:08:46,048 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:08:46,049 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:4f9ad38d-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,055 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:08:46,060 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:4f9acfd3-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,064 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:4f9acfbd-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,064 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:08:46,066 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:08:46,067 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:4f9ad0a0-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,075 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:08:46,080 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:de10557d-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,084 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:de105559-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,084 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:08:46,086 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:08:46,087 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:de10568b-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,096 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:08:46,100 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:3557ce48-0a83-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,104 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:3557ce1e-0a83-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,104 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:08:46,106 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:08:46,107 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:3557cf8a-0a83-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,114 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:08:46,119 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:de105fa1-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,123 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:de105f81-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,123 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:08:46,125 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:08:46,126 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:de106089-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,135 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:08:46,140 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:de105bd1-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,144 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:de105bad-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,144 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:08:46,146 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:08:46,147 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:de105dfe-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:08:46,151 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119175/Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12/Plasma_Lipid_Library_(-)_NIST_SRM.skyd into the system
08 Oct 2021 17:08:46,152 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119175/Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12/Plasma_Lipid_Library_(-)_NIST_SRM.skyd into the system
08 Oct 2021 17:08:46,153 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119175/Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip into the system
08 Oct 2021 17:08:46,156 INFO : Starting import from Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip
08 Oct 2021 17:08:46,161 INFO : Starting to import Skyline document from Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip
08 Oct 2021 17:08:46,166 INFO : Expanding Negative_Plasma_Lipid_iRT.irtdb
08 Oct 2021 17:08:46,167 INFO : Expanding Plasma_Lipids_Negative.blib
08 Oct 2021 17:08:46,168 INFO : Expanding Plasma_Lipid_Library_(-)_NIST_SRM.skyd
08 Oct 2021 17:08:46,288 INFO : Expanding Plasma_Lipid_Library_(-)_NIST_SRM.sky.view
08 Oct 2021 17:08:46,288 INFO : Expanding Plasma_Lipid_Library_(-)_NIST_SRM.sky
08 Oct 2021 17:08:46,299 INFO : Expanding Plasma_Lipid_Library_(-)_NIST_SRM.skyl
08 Oct 2021 17:08:46,310 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
08 Oct 2021 17:08:46,414 DEBUG: Starting to load chromatogram headers
08 Oct 2021 17:08:46,417 DEBUG: Done loading chromatogram headers
08 Oct 2021 17:08:46,519 INFO : Inserting Negative Plasma Lipid iRT Calibrants
08 Oct 2021 17:08:46,525 INFO : 1% Done
08 Oct 2021 17:08:46,562 INFO : 2% Done
08 Oct 2021 17:08:46,602 INFO : 3% Done
08 Oct 2021 17:08:46,646 INFO : 4% Done
08 Oct 2021 17:08:46,689 INFO : 5% Done
08 Oct 2021 17:08:46,731 INFO : 6% Done
08 Oct 2021 17:08:46,763 INFO : 7% Done
08 Oct 2021 17:08:46,797 INFO : 8% Done
08 Oct 2021 17:08:46,824 DEBUG: Total molecules inserted: 20
08 Oct 2021 17:08:46,824 INFO : Inserting Cer (Ceramide)
08 Oct 2021 17:08:46,829 INFO : 9% Done
08 Oct 2021 17:08:46,889 INFO : 10% Done
08 Oct 2021 17:08:46,918 INFO : 11% Done
08 Oct 2021 17:08:46,959 INFO : 12% Done
08 Oct 2021 17:08:46,989 INFO : 14% Done
08 Oct 2021 17:08:47,050 INFO : 15% Done
08 Oct 2021 17:08:47,077 INFO : 16% Done
08 Oct 2021 17:08:47,103 INFO : 17% Done
08 Oct 2021 17:08:47,128 INFO : 18% Done
08 Oct 2021 17:08:47,177 INFO : 19% Done
08 Oct 2021 17:08:47,202 INFO : 20% Done
08 Oct 2021 17:08:47,227 INFO : 21% Done
08 Oct 2021 17:08:47,247 DEBUG: Total molecules inserted: 16
08 Oct 2021 17:08:47,247 INFO : Inserting FA (Fatty acyl)
08 Oct 2021 17:08:47,262 INFO : 22% Done
08 Oct 2021 17:08:47,291 INFO : 23% Done
08 Oct 2021 17:08:47,322 INFO : 24% Done
08 Oct 2021 17:08:47,356 INFO : 25% Done
08 Oct 2021 17:08:47,408 INFO : 26% Done
08 Oct 2021 17:08:47,423 DEBUG: Total molecules inserted: 42
08 Oct 2021 17:08:47,424 INFO : Inserting GM3 (Ganglioside)
08 Oct 2021 17:08:47,435 INFO : 27% Done
08 Oct 2021 17:08:47,451 DEBUG: Total molecules inserted: 3
08 Oct 2021 17:08:47,452 INFO : Inserting HexCer (Glc/Glu Glycosphingolipid)
08 Oct 2021 17:08:47,456 INFO : 28% Done
08 Oct 2021 17:08:47,483 INFO : 29% Done
08 Oct 2021 17:08:47,512 INFO : 30% Done
08 Oct 2021 17:08:47,541 INFO : 31% Done
08 Oct 2021 17:08:47,596 INFO : 32% Done
08 Oct 2021 17:08:47,627 INFO : 33% Done
08 Oct 2021 17:08:47,656 INFO : 34% Done
08 Oct 2021 17:08:47,682 DEBUG: Total molecules inserted: 8
08 Oct 2021 17:08:47,682 INFO : Inserting LPC (Lyso phosphatidylcholine)
08 Oct 2021 17:08:47,684 INFO : 35% Done
08 Oct 2021 17:08:47,720 INFO : 36% Done
08 Oct 2021 17:08:47,753 INFO : 37% Done
08 Oct 2021 17:08:47,775 INFO : 38% Done
08 Oct 2021 17:08:47,808 INFO : 39% Done
08 Oct 2021 17:08:47,841 INFO : 40% Done
08 Oct 2021 17:08:47,860 DEBUG: Total molecules inserted: 26
08 Oct 2021 17:08:47,860 INFO : Inserting LPE (Lyso phosphatidylethanolamine)
08 Oct 2021 17:08:47,870 INFO : 41% Done
08 Oct 2021 17:08:47,901 INFO : 42% Done
08 Oct 2021 17:08:47,931 INFO : 43% Done
08 Oct 2021 17:08:47,951 DEBUG: Total molecules inserted: 12
08 Oct 2021 17:08:47,951 INFO : Inserting PA (Phosphatidic acid)
08 Oct 2021 17:08:47,960 DEBUG: Total molecules inserted: 1
08 Oct 2021 17:08:47,960 INFO : Inserting PC (Phosphatidylcholine)
08 Oct 2021 17:08:47,964 INFO : 44% Done
08 Oct 2021 17:08:47,993 INFO : 45% Done
08 Oct 2021 17:08:48,017 INFO : 46% Done
08 Oct 2021 17:08:48,051 INFO : 47% Done
08 Oct 2021 17:08:48,081 INFO : 48% Done
08 Oct 2021 17:08:48,111 INFO : 49% Done
08 Oct 2021 17:08:48,140 INFO : 50% Done
08 Oct 2021 17:08:48,171 INFO : 51% Done
08 Oct 2021 17:08:48,200 INFO : 52% Done
08 Oct 2021 17:08:48,236 INFO : 53% Done
08 Oct 2021 17:08:48,267 INFO : 54% Done
08 Oct 2021 17:08:48,297 INFO : 55% Done
08 Oct 2021 17:08:48,322 INFO : 56% Done
08 Oct 2021 17:08:48,352 INFO : 57% Done
08 Oct 2021 17:08:48,390 INFO : 58% Done
08 Oct 2021 17:08:48,411 INFO : 59% Done
08 Oct 2021 17:08:48,440 DEBUG: Total molecules inserted: 48
08 Oct 2021 17:08:48,440 INFO : Inserting PC(O/P-) (Akyl/alkenyl ether phosphatidylcholine)
08 Oct 2021 17:08:48,444 INFO : 60% Done
08 Oct 2021 17:08:48,487 INFO : 61% Done
08 Oct 2021 17:08:48,550 INFO : 62% Done
08 Oct 2021 17:08:48,586 INFO : 63% Done
08 Oct 2021 17:08:48,629 INFO : 64% Done
08 Oct 2021 17:08:48,695 INFO : 65% Done
08 Oct 2021 17:08:48,735 INFO : 66% Done
08 Oct 2021 17:08:48,769 DEBUG: Total molecules inserted: 22
08 Oct 2021 17:08:48,770 INFO : Inserting PE (Phosphatidylethanolamine)
08 Oct 2021 17:08:48,782 INFO : 67% Done
08 Oct 2021 17:08:48,833 INFO : 68% Done
08 Oct 2021 17:08:48,877 INFO : 69% Done
08 Oct 2021 17:08:48,919 INFO : 70% Done
08 Oct 2021 17:08:48,950 INFO : 71% Done
08 Oct 2021 17:08:49,000 INFO : 72% Done
08 Oct 2021 17:08:49,036 INFO : 73% Done
08 Oct 2021 17:08:49,086 INFO : 74% Done
08 Oct 2021 17:08:49,166 INFO : 75% Done
08 Oct 2021 17:08:49,207 INFO : 76% Done
08 Oct 2021 17:08:49,250 INFO : 77% Done
08 Oct 2021 17:08:49,290 INFO : 78% Done
08 Oct 2021 17:08:49,316 DEBUG: Total molecules inserted: 43
08 Oct 2021 17:08:49,316 INFO : Inserting PE(O/P-) (Alkyl/alkenyl ether phosphatidylethanolamine)
08 Oct 2021 17:08:49,330 INFO : 79% Done
08 Oct 2021 17:08:49,366 INFO : 80% Done
08 Oct 2021 17:08:49,412 INFO : 81% Done
08 Oct 2021 17:08:49,446 INFO : 82% Done
08 Oct 2021 17:08:49,475 INFO : 83% Done
08 Oct 2021 17:08:49,509 INFO : 84% Done
08 Oct 2021 17:08:49,542 INFO : 85% Done
08 Oct 2021 17:08:49,567 INFO : 86% Done
08 Oct 2021 17:08:49,591 INFO : 87% Done
08 Oct 2021 17:08:49,603 DEBUG: Total molecules inserted: 30
08 Oct 2021 17:08:49,603 INFO : Inserting PG (Phosphatidylglycerol)
08 Oct 2021 17:08:49,622 INFO : 88% Done
08 Oct 2021 17:08:49,628 DEBUG: Total molecules inserted: 3
08 Oct 2021 17:08:49,628 INFO : Inserting PI (Phosphatidylinositol)
08 Oct 2021 17:08:49,651 INFO : 89% Done
08 Oct 2021 17:08:49,690 INFO : 90% Done
08 Oct 2021 17:08:49,711 INFO : 91% Done
08 Oct 2021 17:08:49,748 INFO : 92% Done
08 Oct 2021 17:08:49,772 INFO : 93% Done
08 Oct 2021 17:08:49,799 DEBUG: Total molecules inserted: 17
08 Oct 2021 17:08:49,799 INFO : Inserting SM (Sphingomyelin)
08 Oct 2021 17:08:49,802 INFO : 94% Done
08 Oct 2021 17:08:49,834 INFO : 95% Done
08 Oct 2021 17:08:49,854 INFO : 96% Done
08 Oct 2021 17:08:49,884 INFO : 97% Done
08 Oct 2021 17:08:49,913 INFO : 98% Done
08 Oct 2021 17:08:49,932 DEBUG: Total molecules inserted: 13
08 Oct 2021 17:08:49,934 INFO : Done parsing Skyline document.
08 Oct 2021 17:08:54,382 INFO : Creating and populating temp tables for Proportion values
08 Oct 2021 17:08:54,403 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2021 17:08:54,447 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2021 17:08:54,474 INFO : Cleaning up temp tables
08 Oct 2021 17:08:54,691 INFO : Completed import of Skyline document from Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip
08 Oct 2021 17:08:54,695 INFO : 100% Done
08 Oct 2021 17:08:54,700 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119175/Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip into the system
08 Oct 2021 17:08:54,700 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119174/Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23/Plasma_Lipid_Library_(+)_NIST_SRM.skyd into the system
08 Oct 2021 17:08:54,701 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119174/Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23/Plasma_Lipid_Library_(+)_NIST_SRM.skyd into the system
08 Oct 2021 17:08:54,701 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119174/Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23.sky.zip into the system
08 Oct 2021 17:08:54,703 INFO : Starting import from Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23.sky.zip
08 Oct 2021 17:08:54,708 INFO : Starting to import Skyline document from Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23.sky.zip
08 Oct 2021 17:08:54,715 INFO : Expanding Positive_Plasma_Lipid_iRT.irtdb
08 Oct 2021 17:08:54,716 INFO : Expanding Plasma_Lipids_Positive.blib
08 Oct 2021 17:08:54,717 INFO : Expanding Plasma_Lipid_Library_(+)_NIST_SRM.skyd
08 Oct 2021 17:08:54,888 INFO : Expanding Plasma_Lipid_Library_(+)_NIST_SRM.sky.view
08 Oct 2021 17:08:54,888 INFO : Expanding Plasma_Lipid_Library_(+)_NIST_SRM.sky
08 Oct 2021 17:08:54,900 INFO : Expanding Plasma_Lipid_Library_(+)_NIST_SRM.skyl
08 Oct 2021 17:08:54,913 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
08 Oct 2021 17:08:55,014 DEBUG: Starting to load chromatogram headers
08 Oct 2021 17:08:55,016 DEBUG: Done loading chromatogram headers
08 Oct 2021 17:08:55,023 INFO : Attempting to calculate iRT regression line from shared peptides.
08 Oct 2021 17:08:55,264 ERROR: Import failed
org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:1058)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:1013)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:345)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:246)
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:86)
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:430)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:399)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:189)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:170)
at org.labkey.experiment.xar.FolderXarImporterFactory$FolderXarImporter.process(FolderXarImporterFactory.java:154)
at org.labkey.api.admin.FolderImporterImpl.process(FolderImporterImpl.java:73)
at org.labkey.panoramapublic.pipeline.ExperimentImportTask.doImport(ExperimentImportTask.java:98)
at org.labkey.panoramapublic.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:59)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:818)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1055)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor1613.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:831)
08 Oct 2021 17:08:55,309 FATAL:
08 Oct 2021 17:08:55,316 FATAL: Exception during experiment import
org.labkey.api.exp.XarFormatException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:434)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:399)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:189)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:170)
at org.labkey.experiment.xar.FolderXarImporterFactory$FolderXarImporter.process(FolderXarImporterFactory.java:154)
at org.labkey.api.admin.FolderImporterImpl.process(FolderImporterImpl.java:73)
at org.labkey.panoramapublic.pipeline.ExperimentImportTask.doImport(ExperimentImportTask.java:98)
at org.labkey.panoramapublic.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:59)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:818)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1055)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor1613.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:831)
Caused by: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:112)
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:430)
... 30 more
Caused by: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:1058)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:1013)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:345)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:246)
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:86)
... 31 more
08 Oct 2021 17:08:55,321 FATAL: Experiment import FAILED
08 Oct 2021 17:08:55,324 INFO : Failed to complete task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
08 Oct 2021 17:08:55,327 ERROR: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
org.labkey.api.pipeline.PipelineJobException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
at org.labkey.panoramapublic.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:69)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:818)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1055)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor1613.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:831)
Caused by: org.labkey.api.exp.XarFormatException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:434)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:399)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:189)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:170)
at org.labkey.experiment.xar.FolderXarImporterFactory$FolderXarImporter.process(FolderXarImporterFactory.java:154)
at org.labkey.api.admin.FolderImporterImpl.process(FolderImporterImpl.java:73)
at org.labkey.panoramapublic.pipeline.ExperimentImportTask.doImport(ExperimentImportTask.java:98)
at org.labkey.panoramapublic.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:59)
... 23 more
Caused by: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:112)
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:430)
... 30 more
Caused by: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1689) for this folder: /Panorama Public/2021/NCSU Baker Lab - Smoke Inhalation and SRM 1950
Standards:
1) #$#FA 12:0$C12H24O2$ -3.552713678800501E-15
2) #$#FA 22:6$C22H32O2$ 7.723440272800602
3) #$#FA 14:0$C14H28O2$ 7.920424366885712
4) #$#FA 20:1$C20H38O2$ 28.134281607152566
5) #$#PI(16:0_22:6)$C47H79O13P$ 48.47404555522989
6) #$#PI(16:0_20:4)$C45H79O13P$ 50.989836252025015
7) #$#SM(d16:0/16:1);SM(d18:1/14:0)$C37H75N2O6P$ 56.01016999402144
8) #$#PI(18:0_22:6)$C49H83O13P$ 59.29514462386808
9) #$#PI(18:0_20:4)$C47H83O13P$ 61.6139488425909
10) #$#PE(16:0_22:6)$C43H74NO8P$ 68.25239959039286
11) #$#PE(16:0_20:4);PE(18:2/18:2)$C41H74NO8P$ 70.47271176207312
12) #$#PE(16:0_18:2)$C39H74NO8P$ 72.31405579302451
13) #$#PE(P-16:0/20:4)$C41H74NO7P$ 75.8832612963922
14) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
15) #$#PC(16:0_18:1)$C42H82NO8P$ 77.4253815583428
16) #$#PE(P-18:0/22:6)$C45H78NO7P$ 81.56678690067693
17) #$#PE(P-18:0/20:4)$C43H78NO7P$ 83.49538009505147
18) #$#Cer(d18:2/24:1)$C42H79NO3$ 91.69469878011851
19) #$#HexCer(d18:1/24:0)$C48H93NO8$ 95.8510946339452
20) #$#Cer(d18:1/24:0)$C42H83NO3$ 100.0
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PE(16:0_22:6)$C43H74NO8P$ 59.11053102447526
2) #$#PE(16:0_18:2)$C39H74NO8P$ 62.54447223569257
3) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
4) #$#PC(16:0_18:1)$C42H82NO8P$ 66.23278594678624
5) #$#Cer(d18:1/24:0)$C42H83NO3$ 85.88822549502325
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:1058)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:1013)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:345)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:246)
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:86)
... 31 more
08 Oct 2021 17:14:34,520 INFO : Retrying job.
08 Oct 2021 17:14:34,520 DEBUG: Database indicates active task ID is org.labkey.panoramapublic.pipeline.ExperimentImportTask
08 Oct 2021 17:14:34,520 DEBUG: Retry details: Old Job ID: 24c14020-0ac1-103a-b54f-fea6ddf5779e
08 Oct 2021 17:14:34,543 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
08 Oct 2021 17:14:34,544 INFO :
08 Oct 2021 17:14:34,545 INFO : Importing experiment.
08 Oct 2021 17:14:34,557 INFO : Loading folder properties (folder type, settings and active modules)
08 Oct 2021 17:14:34,590 INFO : Done importing folder properties (folder type, settings and active modules)
08 Oct 2021 17:14:34,595 INFO : Loading etl definitions
08 Oct 2021 17:14:34,598 INFO : Loading wikis
08 Oct 2021 17:14:34,600 INFO : 0 wikis imported
08 Oct 2021 17:14:34,600 INFO : Done importing wikis
08 Oct 2021 17:14:34,601 INFO : Starting to copy files
08 Oct 2021 17:14:46,626 INFO : Copied 40 files
08 Oct 2021 17:14:46,626 INFO : Ensuring exp.data rows exist for imported files
08 Oct 2021 17:14:47,519 INFO : Starting Sample Type and Data Class import
08 Oct 2021 17:14:47,520 INFO : No types XAR file to process.
08 Oct 2021 17:14:47,520 INFO : Finished importing Sample Types and Data Classes
08 Oct 2021 17:14:47,523 INFO : Loading xar
08 Oct 2021 17:14:52,979 DEBUG: Existing action set with parent protocol LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip' is referenced by other experiment runs, so it cannot be updated
08 Oct 2021 17:14:52,993 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip' is referenced by other experiment runs, so it cannot be updated
08 Oct 2021 17:14:52,995 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core' is referenced by other experiment runs, so it cannot be updated
08 Oct 2021 17:14:52,996 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output' is referenced by other experiment runs, so it cannot be updated
08 Oct 2021 17:14:53,001 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip' matches a protocol with the same LSID that has already been loaded.
08 Oct 2021 17:14:53,003 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core' matches a protocol with the same LSID that has already been loaded.
08 Oct 2021 17:14:53,004 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output' matches a protocol with the same LSID that has already been loaded.
08 Oct 2021 17:14:53,005 DEBUG: Protocol import complete
08 Oct 2021 17:14:53,006 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9186:Development+and+Application+of+Multidimensional+Lipid+Libraries+to+Investigate+Lipidomic+Dysregulation+Related+to+Smoke+Inhalation+Injury+Severity'
08 Oct 2021 17:14:53,006 DEBUG: Experiment/Run group import complete
08 Oct 2021 17:14:53,015 DEBUG: Protocol action set import complete
08 Oct 2021 17:14:53,016 DEBUG: Experiment run already exists, it will NOT be reimported, LSID 'urn:lsid:uw.edu:Run.Folder-9186:4f9ad38d-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,017 INFO : Experiment run 'Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip' complete
08 Oct 2021 17:14:53,017 DEBUG: Experiment run import complete, LSID 'urn:lsid:uw.edu:Run.Folder-9186:4f9ad38d-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,045 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:14:53,165 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:4f9acfd3-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,173 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:4f9acfbd-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,173 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:14:53,372 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:14:53,373 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:4f9ad0a0-0a81-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,380 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:14:53,385 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:de10557d-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,389 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:de105559-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,389 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:14:53,391 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:14:53,392 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:de10568b-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,401 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:14:53,408 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:3557ce48-0a83-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,413 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:3557ce1e-0a83-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,413 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:14:53,416 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:14:53,417 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:3557cf8a-0a83-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,430 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:14:53,435 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:de105fa1-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,438 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:de105f81-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,438 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:14:53,440 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:14:53,441 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:de106089-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,448 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip'
08 Oct 2021 17:14:53,453 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9186:de105bd1-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,458 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9186:de105bad-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,458 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Core'
08 Oct 2021 17:14:53,460 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9186:TargetedMS.ImportSkyZip.Output'
08 Oct 2021 17:14:53,460 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9186:de105dfe-0a84-103a-b54f-fea6ddf5779e'
08 Oct 2021 17:14:53,462 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119175/Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip into the system
08 Oct 2021 17:14:53,465 INFO : Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip has already been imported so it does not need to be imported again
08 Oct 2021 17:14:53,468 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119175/Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12.sky.zip into the system
08 Oct 2021 17:14:53,468 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119175/Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12/Plasma_Lipid_Library_(-)_NIST_SRM.skyd into the system
08 Oct 2021 17:14:53,468 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119175/Plasma_Lipid_Library_(-)_NIST_SRM_2021-10-08_12-22-12/Plasma_Lipid_Library_(-)_NIST_SRM.skyd into the system
08 Oct 2021 17:14:53,468 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119174/Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23/Plasma_Lipid_Library_(+)_NIST_SRM.skyd into the system
08 Oct 2021 17:14:53,469 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119174/Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23/Plasma_Lipid_Library_(+)_NIST_SRM.skyd into the system
08 Oct 2021 17:14:53,469 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119174/Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23.sky.zip into the system
08 Oct 2021 17:14:53,470 INFO : Starting import from Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23.sky.zip
08 Oct 2021 17:14:53,473 INFO : Starting to import Skyline document from Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23.sky.zip
08 Oct 2021 17:14:53,480 INFO : Expanding Positive_Plasma_Lipid_iRT.irtdb
08 Oct 2021 17:14:53,481 INFO : Expanding Plasma_Lipids_Positive.blib
08 Oct 2021 17:14:53,482 INFO : Expanding Plasma_Lipid_Library_(+)_NIST_SRM.skyd
08 Oct 2021 17:14:53,646 INFO : Expanding Plasma_Lipid_Library_(+)_NIST_SRM.sky.view
08 Oct 2021 17:14:53,646 INFO : Expanding Plasma_Lipid_Library_(+)_NIST_SRM.sky
08 Oct 2021 17:14:53,657 INFO : Expanding Plasma_Lipid_Library_(+)_NIST_SRM.skyl
08 Oct 2021 17:14:53,668 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
08 Oct 2021 17:14:53,762 DEBUG: Starting to load chromatogram headers
08 Oct 2021 17:14:53,764 DEBUG: Done loading chromatogram headers
08 Oct 2021 17:14:53,891 INFO : Inserting Positive Plasma Lipid iRT Calibrants
08 Oct 2021 17:14:53,894 INFO : 1% Done
08 Oct 2021 17:14:53,927 INFO : 2% Done
08 Oct 2021 17:14:53,951 INFO : 3% Done
08 Oct 2021 17:14:53,981 INFO : 4% Done
08 Oct 2021 17:14:54,015 INFO : 5% Done
08 Oct 2021 17:14:54,041 INFO : 6% Done
08 Oct 2021 17:14:54,054 DEBUG: Total molecules inserted: 20
08 Oct 2021 17:14:54,054 INFO : Inserting AC (Acyl carnitine)
08 Oct 2021 17:14:54,071 INFO : 7% Done
08 Oct 2021 17:14:54,100 INFO : 8% Done
08 Oct 2021 17:14:54,113 DEBUG: Total molecules inserted: 12
08 Oct 2021 17:14:54,113 INFO : Inserting ANA (Anandamide)
08 Oct 2021 17:14:54,122 DEBUG: Total molecules inserted: 2
08 Oct 2021 17:14:54,122 INFO : Inserting CE (Cholesterol ester)
08 Oct 2021 17:14:54,129 INFO : 9% Done
08 Oct 2021 17:14:54,148 DEBUG: Total molecules inserted: 5
08 Oct 2021 17:14:54,148 INFO : Inserting Cer (Ceramide)
08 Oct 2021 17:14:54,150 INFO : 10% Done
08 Oct 2021 17:14:54,162 DEBUG: Total molecules inserted: 2
08 Oct 2021 17:14:54,162 INFO : Inserting DG (Diacylglycerol)
08 Oct 2021 17:14:54,181 INFO : 11% Done
08 Oct 2021 17:14:54,187 DEBUG: Total molecules inserted: 4
08 Oct 2021 17:14:54,188 INFO : Inserting LPC (Lyso phosphatidylcholine)
08 Oct 2021 17:14:54,211 INFO : 12% Done
08 Oct 2021 17:14:54,241 INFO : 13% Done
08 Oct 2021 17:14:54,270 INFO : 14% Done
08 Oct 2021 17:14:54,300 INFO : 15% Done
08 Oct 2021 17:14:54,320 INFO : 16% Done
08 Oct 2021 17:14:54,350 INFO : 17% Done
08 Oct 2021 17:14:54,379 INFO : 18% Done
08 Oct 2021 17:14:54,398 INFO : 19% Done
08 Oct 2021 17:14:54,426 INFO : 20% Done
08 Oct 2021 17:14:54,455 INFO : 21% Done
08 Oct 2021 17:14:54,473 DEBUG: Total molecules inserted: 29
08 Oct 2021 17:14:54,473 INFO : Inserting LPE (Lyso phosphatidylethanolamine)
08 Oct 2021 17:14:54,475 INFO : 22% Done
08 Oct 2021 17:14:54,504 INFO : 23% Done
08 Oct 2021 17:14:54,532 INFO : 24% Done
08 Oct 2021 17:14:54,550 DEBUG: Total molecules inserted: 8
08 Oct 2021 17:14:54,550 INFO : Inserting PC (Phosphatidylcholine)
08 Oct 2021 17:14:54,562 INFO : 25% Done
08 Oct 2021 17:14:54,623 INFO : 26% Done
08 Oct 2021 17:14:54,638 INFO : 27% Done
08 Oct 2021 17:14:54,680 INFO : 28% Done
08 Oct 2021 17:14:54,714 INFO : 29% Done
08 Oct 2021 17:14:54,733 INFO : 30% Done
08 Oct 2021 17:14:54,767 INFO : 31% Done
08 Oct 2021 17:14:54,808 INFO : 32% Done
08 Oct 2021 17:14:54,828 INFO : 33% Done
08 Oct 2021 17:14:54,863 INFO : 34% Done
08 Oct 2021 17:14:54,882 INFO : 35% Done
08 Oct 2021 17:14:54,923 INFO : 36% Done
08 Oct 2021 17:14:54,955 INFO : 37% Done
08 Oct 2021 17:14:54,974 INFO : 38% Done
08 Oct 2021 17:14:55,007 INFO : 39% Done
08 Oct 2021 17:14:55,045 INFO : 40% Done
08 Oct 2021 17:14:55,083 INFO : 41% Done
08 Oct 2021 17:14:55,095 INFO : 42% Done
08 Oct 2021 17:14:55,132 INFO : 43% Done
08 Oct 2021 17:14:55,160 INFO : 44% Done
08 Oct 2021 17:14:55,179 INFO : 45% Done
08 Oct 2021 17:14:55,220 INFO : 46% Done
08 Oct 2021 17:14:55,256 INFO : 47% Done
08 Oct 2021 17:14:55,272 DEBUG: Inserted 50 molecules
08 Oct 2021 17:14:55,290 INFO : 48% Done
08 Oct 2021 17:14:55,308 INFO : 49% Done
08 Oct 2021 17:14:55,352 INFO : 50% Done
08 Oct 2021 17:14:55,379 INFO : 51% Done
08 Oct 2021 17:14:55,411 INFO : 52% Done
08 Oct 2021 17:14:55,437 INFO : 53% Done
08 Oct 2021 17:14:55,454 INFO : 54% Done
08 Oct 2021 17:14:55,489 INFO : 55% Done
08 Oct 2021 17:14:55,524 INFO : 56% Done
08 Oct 2021 17:14:55,555 DEBUG: Total molecules inserted: 67
08 Oct 2021 17:14:55,555 INFO : Inserting PC(O/P-) (Akyl/alkenyl ether phosphatidylcholine)
08 Oct 2021 17:14:55,558 INFO : 57% Done
08 Oct 2021 17:14:55,585 INFO : 58% Done
08 Oct 2021 17:14:55,612 INFO : 59% Done
08 Oct 2021 17:14:55,638 INFO : 60% Done
08 Oct 2021 17:14:55,673 INFO : 61% Done
08 Oct 2021 17:14:55,698 INFO : 62% Done
08 Oct 2021 17:14:55,724 INFO : 63% Done
08 Oct 2021 17:14:55,754 INFO : 64% Done
08 Oct 2021 17:14:55,781 INFO : 65% Done
08 Oct 2021 17:14:55,794 DEBUG: Total molecules inserted: 20
08 Oct 2021 17:14:55,794 INFO : Inserting PE (Phosphatidylethanolamine)
08 Oct 2021 17:14:55,809 INFO : 66% Done
08 Oct 2021 17:14:55,835 INFO : 67% Done
08 Oct 2021 17:14:55,862 INFO : 68% Done
08 Oct 2021 17:14:55,890 INFO : 69% Done
08 Oct 2021 17:14:55,917 INFO : 70% Done
08 Oct 2021 17:14:55,929 DEBUG: Total molecules inserted: 10
08 Oct 2021 17:14:55,929 INFO : Inserting SM (Sphingomyelin)
08 Oct 2021 17:14:55,954 INFO : 71% Done
08 Oct 2021 17:14:55,978 INFO : 72% Done
08 Oct 2021 17:14:56,007 INFO : 73% Done
08 Oct 2021 17:14:56,037 INFO : 74% Done
08 Oct 2021 17:14:56,091 INFO : 75% Done
08 Oct 2021 17:14:56,118 INFO : 76% Done
08 Oct 2021 17:14:56,146 INFO : 77% Done
08 Oct 2021 17:14:56,151 DEBUG: Total molecules inserted: 46
08 Oct 2021 17:14:56,151 INFO : Inserting TG (Triacylglycerol)
08 Oct 2021 17:14:56,176 INFO : 78% Done
08 Oct 2021 17:14:56,216 INFO : 79% Done
08 Oct 2021 17:14:56,248 INFO : 80% Done
08 Oct 2021 17:14:56,278 INFO : 81% Done
08 Oct 2021 17:14:56,308 INFO : 82% Done
08 Oct 2021 17:14:56,335 INFO : 83% Done
08 Oct 2021 17:14:56,367 INFO : 84% Done
08 Oct 2021 17:14:56,394 INFO : 85% Done
08 Oct 2021 17:14:56,428 INFO : 86% Done
08 Oct 2021 17:14:56,455 INFO : 87% Done
08 Oct 2021 17:14:56,485 INFO : 88% Done
08 Oct 2021 17:14:56,514 INFO : 89% Done
08 Oct 2021 17:14:56,546 INFO : 90% Done
08 Oct 2021 17:14:56,556 DEBUG: Inserted 50 molecules
08 Oct 2021 17:14:56,577 INFO : 91% Done
08 Oct 2021 17:14:56,599 INFO : 92% Done
08 Oct 2021 17:14:56,633 INFO : 93% Done
08 Oct 2021 17:14:56,658 INFO : 94% Done
08 Oct 2021 17:14:56,685 INFO : 95% Done
08 Oct 2021 17:14:56,717 INFO : 96% Done
08 Oct 2021 17:14:56,749 INFO : 97% Done
08 Oct 2021 17:14:56,774 INFO : 98% Done
08 Oct 2021 17:14:56,793 DEBUG: Total molecules inserted: 88
08 Oct 2021 17:14:56,794 INFO : Done parsing Skyline document.
08 Oct 2021 17:15:03,572 INFO : Creating and populating temp tables for Proportion values
08 Oct 2021 17:15:03,595 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2021 17:15:03,648 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2021 17:15:03,676 INFO : Cleaning up temp tables
08 Oct 2021 17:15:03,907 INFO : Completed import of Skyline document from Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23.sky.zip
08 Oct 2021 17:15:03,910 INFO : 100% Done
08 Oct 2021 17:15:03,914 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119174/Plasma_Lipid_Library_(+)_NIST_SRM_2021-10-08_12-21-23.sky.zip into the system
08 Oct 2021 17:15:03,914 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119179/Smoke_Inhalation_Plasma_(+)_2021-10-08_12-45-31/Smoke_Inhalation_Plasma_(+).skyd into the system
08 Oct 2021 17:15:03,914 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119179/Smoke_Inhalation_Plasma_(+)_2021-10-08_12-45-31/Smoke_Inhalation_Plasma_(+).skyd into the system
08 Oct 2021 17:15:03,914 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119179/Smoke_Inhalation_Plasma_(+)_2021-10-08_12-45-31.sky.zip into the system
08 Oct 2021 17:15:03,916 INFO : Starting import from Smoke_Inhalation_Plasma_(+)_2021-10-08_12-45-31.sky.zip
08 Oct 2021 17:15:03,918 INFO : Starting to import Skyline document from Smoke_Inhalation_Plasma_(+)_2021-10-08_12-45-31.sky.zip
08 Oct 2021 17:15:03,940 INFO : Expanding Smoke_Inhalation_Plasma_(+).skyd
08 Oct 2021 17:15:04,428 INFO : Expanding Smoke_Inhalation_Plasma_(+).sky.view
08 Oct 2021 17:15:04,428 INFO : Expanding Smoke_Inhalation_Plasma_(+).sky
08 Oct 2021 17:15:04,456 INFO : Expanding Smoke_Inhalation_Plasma_(+).skyl
08 Oct 2021 17:15:04,469 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
08 Oct 2021 17:15:04,645 DEBUG: Starting to load chromatogram headers
08 Oct 2021 17:15:04,652 DEBUG: Done loading chromatogram headers
08 Oct 2021 17:15:04,728 INFO : Inserting ANA (Anandamide)
08 Oct 2021 17:15:04,732 INFO : 1% Done
08 Oct 2021 17:15:04,748 DEBUG: Total molecules inserted: 1
08 Oct 2021 17:15:04,749 INFO : Inserting AC (Acyl carnitine)
08 Oct 2021 17:15:04,787 INFO : 2% Done
08 Oct 2021 17:15:04,842 INFO : 3% Done
08 Oct 2021 17:15:04,859 DEBUG: Total molecules inserted: 6
08 Oct 2021 17:15:04,859 INFO : Inserting LPC (Lyso phosphatidylcholine)
08 Oct 2021 17:15:04,865 INFO : 4% Done
08 Oct 2021 17:15:04,934 DEBUG: Total molecules inserted: 2
08 Oct 2021 17:15:04,934 INFO : Inserting LPE (Lyso phosphatidylethanolamine)
08 Oct 2021 17:15:04,940 INFO : 5% Done
08 Oct 2021 17:15:04,975 INFO : 6% Done
08 Oct 2021 17:15:05,006 DEBUG: Total molecules inserted: 2
08 Oct 2021 17:15:05,006 INFO : Inserting DG (Diacylglycerol)
08 Oct 2021 17:15:05,032 INFO : 7% Done
08 Oct 2021 17:15:05,093 INFO : 8% Done
08 Oct 2021 17:15:05,111 DEBUG: Total molecules inserted: 5
08 Oct 2021 17:15:05,112 INFO : Inserting SM (Sphingomyelin)
08 Oct 2021 17:15:05,134 INFO : 9% Done
08 Oct 2021 17:15:05,188 INFO : 10% Done
08 Oct 2021 17:15:05,240 INFO : 11% Done
08 Oct 2021 17:15:05,294 INFO : 12% Done
08 Oct 2021 17:15:05,347 INFO : 13% Done
08 Oct 2021 17:15:05,384 INFO : 14% Done
08 Oct 2021 17:15:05,439 INFO : 15% Done
08 Oct 2021 17:15:05,499 INFO : 16% Done
08 Oct 2021 17:15:05,553 INFO : 17% Done
08 Oct 2021 17:15:05,621 INFO : 18% Done
08 Oct 2021 17:15:05,637 DEBUG: Total molecules inserted: 28
08 Oct 2021 17:15:05,637 INFO : Inserting CE (Cholesterol ester)
08 Oct 2021 17:15:05,658 INFO : 19% Done
08 Oct 2021 17:15:05,711 INFO : 20% Done
08 Oct 2021 17:15:05,726 DEBUG: Total molecules inserted: 5
08 Oct 2021 17:15:05,727 INFO : Inserting PC (Phosphatidylcholine)
08 Oct 2021 17:15:05,769 INFO : 21% Done
08 Oct 2021 17:15:05,805 INFO : 22% Done
08 Oct 2021 17:15:05,845 INFO : 23% Done
08 Oct 2021 17:15:05,933 INFO : 24% Done
08 Oct 2021 17:15:05,971 INFO : 25% Done
08 Oct 2021 17:15:06,078 INFO : 26% Done
08 Oct 2021 17:15:06,132 INFO : 27% Done
08 Oct 2021 17:15:06,222 INFO : 28% Done
08 Oct 2021 17:15:06,275 INFO : 29% Done
08 Oct 2021 17:15:06,332 INFO : 30% Done
08 Oct 2021 17:15:06,373 INFO : 31% Done
08 Oct 2021 17:15:06,412 INFO : 32% Done
08 Oct 2021 17:15:06,457 INFO : 33% Done
08 Oct 2021 17:15:06,520 INFO : 34% Done
08 Oct 2021 17:15:06,599 INFO : 36% Done
08 Oct 2021 17:15:06,669 INFO : 37% Done
08 Oct 2021 17:15:06,776 INFO : 39% Done
08 Oct 2021 17:15:06,859 INFO : 40% Done
08 Oct 2021 17:15:06,926 INFO : 41% Done
08 Oct 2021 17:15:06,971 INFO : 42% Done
08 Oct 2021 17:15:07,091 INFO : 43% Done
08 Oct 2021 17:15:07,159 INFO : 45% Done
08 Oct 2021 17:15:07,220 DEBUG: Total molecules inserted: 30
08 Oct 2021 17:15:07,220 INFO : Inserting PE (Phosphatidylethanolamine)
08 Oct 2021 17:15:07,227 INFO : 46% Done
08 Oct 2021 17:15:07,269 DEBUG: Total molecules inserted: 1
08 Oct 2021 17:15:07,270 INFO : Inserting PC(O/P-) (Akyl/alkenyl ether phosphatidylcholine)
08 Oct 2021 17:15:07,307 INFO : 47% Done
08 Oct 2021 17:15:07,349 INFO : 48% Done
08 Oct 2021 17:15:07,392 INFO : 49% Done
08 Oct 2021 17:15:07,441 INFO : 50% Done
08 Oct 2021 17:15:07,510 INFO : 51% Done
08 Oct 2021 17:15:07,555 INFO : 52% Done
08 Oct 2021 17:15:07,598 INFO : 53% Done
08 Oct 2021 17:15:07,666 INFO : 54% Done
08 Oct 2021 17:15:07,700 INFO : 55% Done
08 Oct 2021 17:15:07,772 INFO : 56% Done
08 Oct 2021 17:15:07,818 DEBUG: Total molecules inserted: 14
08 Oct 2021 17:15:07,818 INFO : Inserting TG (Triacylglycerol)
08 Oct 2021 17:15:07,828 INFO : 57% Done
08 Oct 2021 17:15:07,877 INFO : 58% Done
08 Oct 2021 17:15:07,965 INFO : 59% Done
08 Oct 2021 17:15:08,020 INFO : 60% Done
08 Oct 2021 17:15:08,069 INFO : 61% Done
08 Oct 2021 17:15:08,142 INFO : 62% Done
08 Oct 2021 17:15:08,215 INFO : 63% Done
08 Oct 2021 17:15:08,255 INFO : 64% Done
08 Oct 2021 17:15:08,337 INFO : 65% Done
08 Oct 2021 17:15:08,389 INFO : 66% Done
08 Oct 2021 17:15:08,457 INFO : 67% Done
08 Oct 2021 17:15:08,523 INFO : 68% Done
08 Oct 2021 17:15:08,583 INFO : 69% Done
08 Oct 2021 17:15:08,631 INFO : 70% Done
08 Oct 2021 17:15:08,693 INFO : 71% Done
08 Oct 2021 17:15:08,751 INFO : 72% Done
08 Oct 2021 17:15:08,797 INFO : 73% Done
08 Oct 2021 17:15:08,852 INFO : 74% Done
08 Oct 2021 17:15:08,959 INFO : 75% Done
08 Oct 2021 17:15:09,008 INFO : 76% Done
08 Oct 2021 17:15:09,083 INFO : 77% Done
08 Oct 2021 17:15:09,115 INFO : 78% Done
08 Oct 2021 17:15:09,181 INFO : 79% Done
08 Oct 2021 17:15:09,238 INFO : 80% Done
08 Oct 2021 17:15:09,295 INFO : 81% Done
08 Oct 2021 17:15:09,341 DEBUG: Inserted 50 molecules
08 Oct 2021 17:15:09,359 INFO : 82% Done
08 Oct 2021 17:15:09,413 INFO : 83% Done
08 Oct 2021 17:15:09,459 INFO : 84% Done
08 Oct 2021 17:15:09,506 INFO : 85% Done
08 Oct 2021 17:15:09,562 INFO : 86% Done
08 Oct 2021 17:15:09,626 INFO : 87% Done
08 Oct 2021 17:15:09,676 INFO : 88% Done
08 Oct 2021 17:15:09,726 INFO : 89% Done
08 Oct 2021 17:15:09,786 INFO : 90% Done
08 Oct 2021 17:15:09,845 INFO : 91% Done
08 Oct 2021 17:15:09,913 INFO : 92% Done
08 Oct 2021 17:15:09,964 INFO : 93% Done
08 Oct 2021 17:15:10,013 INFO : 94% Done
08 Oct 2021 17:15:10,074 INFO : 95% Done
08 Oct 2021 17:15:10,124 INFO : 96% Done
08 Oct 2021 17:15:10,183 INFO : 97% Done
08 Oct 2021 17:15:10,235 INFO : 98% Done
08 Oct 2021 17:15:10,267 DEBUG: Total molecules inserted: 89
08 Oct 2021 17:15:10,268 INFO : Done parsing Skyline document.
08 Oct 2021 17:15:24,096 INFO : Creating and populating temp tables for Proportion values
08 Oct 2021 17:15:24,145 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2021 17:15:24,336 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2021 17:15:24,447 INFO : Cleaning up temp tables
08 Oct 2021 17:15:24,677 INFO : Completed import of Skyline document from Smoke_Inhalation_Plasma_(+)_2021-10-08_12-45-31.sky.zip
08 Oct 2021 17:15:24,679 INFO : 100% Done
08 Oct 2021 17:15:24,683 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119179/Smoke_Inhalation_Plasma_(+)_2021-10-08_12-45-31.sky.zip into the system
08 Oct 2021 17:15:24,683 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119178/Smoke_Inhalation_Plasma_(-)_2021-10-08_12-42-24/Smoke_Inhalation_Plasma_(-).skyd into the system
08 Oct 2021 17:15:24,684 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119178/Smoke_Inhalation_Plasma_(-)_2021-10-08_12-42-24/Smoke_Inhalation_Plasma_(-).skyd into the system
08 Oct 2021 17:15:24,684 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119178/Smoke_Inhalation_Plasma_(-)_2021-10-08_12-42-24.sky.zip into the system
08 Oct 2021 17:15:24,685 INFO : Starting import from Smoke_Inhalation_Plasma_(-)_2021-10-08_12-42-24.sky.zip
08 Oct 2021 17:15:24,687 INFO : Starting to import Skyline document from Smoke_Inhalation_Plasma_(-)_2021-10-08_12-42-24.sky.zip
08 Oct 2021 17:15:24,722 INFO : Expanding Smoke_Inhalation_Plasma_(-).skyd
08 Oct 2021 17:15:25,565 INFO : Expanding Smoke_Inhalation_Plasma_(-).sky.view
08 Oct 2021 17:15:25,566 INFO : Expanding Smoke_Inhalation_Plasma_(-).sky
08 Oct 2021 17:15:25,616 INFO : Expanding Smoke_Inhalation_Plasma_(-).skyl
08 Oct 2021 17:15:25,640 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
08 Oct 2021 17:15:25,954 DEBUG: Starting to load chromatogram headers
08 Oct 2021 17:15:25,963 DEBUG: Done loading chromatogram headers
08 Oct 2021 17:15:26,045 INFO : Inserting FA (Fatty acyl)
08 Oct 2021 17:15:26,081 INFO : 1% Done
08 Oct 2021 17:15:26,159 INFO : 2% Done
08 Oct 2021 17:15:26,249 INFO : 3% Done
08 Oct 2021 17:15:26,342 INFO : 4% Done
08 Oct 2021 17:15:26,431 INFO : 5% Done
08 Oct 2021 17:15:26,509 INFO : 6% Done
08 Oct 2021 17:15:26,599 INFO : 7% Done
08 Oct 2021 17:15:26,689 INFO : 8% Done
08 Oct 2021 17:15:26,778 DEBUG: Total molecules inserted: 48
08 Oct 2021 17:15:26,778 INFO : Inserting LPE (Lyso phosphatidylethanolamine)
08 Oct 2021 17:15:26,782 INFO : 9% Done
08 Oct 2021 17:15:26,861 INFO : 10% Done
08 Oct 2021 17:15:26,965 INFO : 11% Done
08 Oct 2021 17:15:27,038 DEBUG: Total molecules inserted: 10
08 Oct 2021 17:15:27,039 INFO : Inserting LPC (Lyso phosphatidylcholine)
08 Oct 2021 17:15:27,065 INFO : 12% Done
08 Oct 2021 17:15:27,156 INFO : 13% Done
08 Oct 2021 17:15:27,247 INFO : 14% Done
08 Oct 2021 17:15:27,339 INFO : 15% Done
08 Oct 2021 17:15:27,431 INFO : 16% Done
08 Oct 2021 17:15:27,520 INFO : 17% Done
08 Oct 2021 17:15:27,609 INFO : 18% Done
08 Oct 2021 17:15:27,629 DEBUG: Total molecules inserted: 26
08 Oct 2021 17:15:27,629 INFO : Inserting Cer (Ceramide)
08 Oct 2021 17:15:27,641 INFO : 19% Done
08 Oct 2021 17:15:27,813 INFO : 20% Done
08 Oct 2021 17:15:27,898 INFO : 21% Done
08 Oct 2021 17:15:27,961 INFO : 22% Done
08 Oct 2021 17:15:28,051 INFO : 23% Done
08 Oct 2021 17:15:28,153 INFO : 24% Done
08 Oct 2021 17:15:28,282 INFO : 25% Done
08 Oct 2021 17:15:28,458 INFO : 26% Done
08 Oct 2021 17:15:28,546 INFO : 27% Done
08 Oct 2021 17:15:28,637 INFO : 28% Done
08 Oct 2021 17:15:28,729 INFO : 29% Done
08 Oct 2021 17:15:28,804 DEBUG: Total molecules inserted: 13
08 Oct 2021 17:15:28,804 INFO : Inserting PA (Phosphatidic acid)
08 Oct 2021 17:15:28,838 DEBUG: Total molecules inserted: 1
08 Oct 2021 17:15:28,838 INFO : Inserting PE (Phosphatidylethanolamine)
08 Oct 2021 17:15:28,895 INFO : 30% Done
08 Oct 2021 17:15:29,008 INFO : 31% Done
08 Oct 2021 17:15:29,119 INFO : 32% Done
08 Oct 2021 17:15:29,211 INFO : 33% Done
08 Oct 2021 17:15:29,316 INFO : 34% Done
08 Oct 2021 17:15:29,389 INFO : 35% Done
08 Oct 2021 17:15:29,509 INFO : 36% Done
08 Oct 2021 17:15:29,595 INFO : 37% Done
08 Oct 2021 17:15:29,704 INFO : 38% Done
08 Oct 2021 17:15:29,864 INFO : 39% Done
08 Oct 2021 17:15:29,961 INFO : 40% Done
08 Oct 2021 17:15:30,083 INFO : 41% Done
08 Oct 2021 17:15:30,208 INFO : 42% Done
08 Oct 2021 17:15:30,286 INFO : 43% Done
08 Oct 2021 17:15:30,318 DEBUG: Total molecules inserted: 41
08 Oct 2021 17:15:30,318 INFO : Inserting PE(O/P-) (Alkyl/alkenyl ether phosphatidylethanolamine)
08 Oct 2021 17:15:30,386 INFO : 44% Done
08 Oct 2021 17:15:30,516 INFO : 45% Done
08 Oct 2021 17:15:30,608 INFO : 46% Done
08 Oct 2021 17:15:30,702 INFO : 47% Done
08 Oct 2021 17:15:30,795 INFO : 48% Done
08 Oct 2021 17:15:30,887 INFO : 49% Done
08 Oct 2021 17:15:30,985 INFO : 50% Done
08 Oct 2021 17:15:31,085 INFO : 51% Done
08 Oct 2021 17:15:31,217 INFO : 52% Done
08 Oct 2021 17:15:31,262 DEBUG: Total molecules inserted: 30
08 Oct 2021 17:15:31,262 INFO : Inserting SM (Sphingomyelin)
08 Oct 2021 17:15:31,289 INFO : 53% Done
08 Oct 2021 17:15:31,368 INFO : 54% Done
08 Oct 2021 17:15:31,483 INFO : 55% Done
08 Oct 2021 17:15:31,557 INFO : 56% Done
08 Oct 2021 17:15:31,657 INFO : 57% Done
08 Oct 2021 17:15:31,692 DEBUG: Total molecules inserted: 12
08 Oct 2021 17:15:31,692 INFO : Inserting HexCer (Glc/Glu Glycosphingolipid)
08 Oct 2021 17:15:31,707 INFO : 58% Done
08 Oct 2021 17:15:31,809 INFO : 59% Done
08 Oct 2021 17:15:31,916 INFO : 60% Done
08 Oct 2021 17:15:32,021 INFO : 61% Done
08 Oct 2021 17:15:32,125 INFO : 62% Done
08 Oct 2021 17:15:32,227 INFO : 63% Done
08 Oct 2021 17:15:32,330 INFO : 64% Done
08 Oct 2021 17:15:32,432 INFO : 65% Done
08 Oct 2021 17:15:32,522 DEBUG: Total molecules inserted: 8
08 Oct 2021 17:15:32,522 INFO : Inserting PC (Phosphatidylcholine)
08 Oct 2021 17:15:32,570 INFO : 66% Done
08 Oct 2021 17:15:32,659 INFO : 67% Done
08 Oct 2021 17:15:32,778 INFO : 68% Done
08 Oct 2021 17:15:32,903 INFO : 69% Done
08 Oct 2021 17:15:33,004 INFO : 70% Done
08 Oct 2021 17:15:33,146 INFO : 71% Done
08 Oct 2021 17:15:33,263 INFO : 72% Done
08 Oct 2021 17:15:33,340 INFO : 73% Done
08 Oct 2021 17:15:33,463 INFO : 74% Done
08 Oct 2021 17:15:33,694 INFO : 75% Done
08 Oct 2021 17:15:33,797 INFO : 76% Done
08 Oct 2021 17:15:33,909 INFO : 77% Done
08 Oct 2021 17:15:33,987 INFO : 78% Done
08 Oct 2021 17:15:34,141 INFO : 79% Done
08 Oct 2021 17:15:34,250 INFO : 80% Done
08 Oct 2021 17:15:34,374 INFO : 81% Done
08 Oct 2021 17:15:34,488 INFO : 82% Done
08 Oct 2021 17:15:34,524 DEBUG: Inserted 50 molecules
08 Oct 2021 17:15:34,556 DEBUG: Total molecules inserted: 50
08 Oct 2021 17:15:34,556 INFO : Inserting PG (Phosphatidylglycerol)
08 Oct 2021 17:15:34,610 INFO : 83% Done
08 Oct 2021 17:15:34,631 DEBUG: Total molecules inserted: 2
08 Oct 2021 17:15:34,631 INFO : Inserting PC O/P (Akyl/alkenyl ether phosphatidylcholine)
08 Oct 2021 17:15:34,676 INFO : 84% Done
08 Oct 2021 17:15:34,789 INFO : 85% Done
08 Oct 2021 17:15:34,896 INFO : 86% Done
08 Oct 2021 17:15:35,010 INFO : 87% Done
08 Oct 2021 17:15:35,126 INFO : 88% Done
08 Oct 2021 17:15:35,225 INFO : 89% Done
08 Oct 2021 17:15:35,320 INFO : 90% Done
08 Oct 2021 17:15:35,337 DEBUG: Total molecules inserted: 20
08 Oct 2021 17:15:35,338 INFO : Inserting PI (Phosphatidylinositol)
08 Oct 2021 17:15:35,426 INFO : 91% Done
08 Oct 2021 17:15:35,500 INFO : 92% Done
08 Oct 2021 17:15:35,612 INFO : 93% Done
08 Oct 2021 17:15:35,718 INFO : 94% Done
08 Oct 2021 17:15:35,801 INFO : 95% Done
08 Oct 2021 17:15:35,946 INFO : 96% Done
08 Oct 2021 17:15:36,062 INFO : 97% Done
08 Oct 2021 17:15:36,095 DEBUG: Total molecules inserted: 19
08 Oct 2021 17:15:36,095 INFO : Inserting GM3 (Ganglioside)
08 Oct 2021 17:15:36,165 INFO : 98% Done
08 Oct 2021 17:15:36,224 DEBUG: Total molecules inserted: 4
08 Oct 2021 17:15:36,225 INFO : Done parsing Skyline document.
08 Oct 2021 17:16:04,044 INFO : Creating and populating temp tables for Proportion values
08 Oct 2021 17:16:04,106 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2021 17:16:04,384 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2021 17:16:04,540 INFO : Cleaning up temp tables
08 Oct 2021 17:16:04,734 INFO : Completed import of Skyline document from Smoke_Inhalation_Plasma_(-)_2021-10-08_12-42-24.sky.zip
08 Oct 2021 17:16:04,737 INFO : 100% Done
08 Oct 2021 17:16:04,741 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119178/Smoke_Inhalation_Plasma_(-)_2021-10-08_12-42-24.sky.zip into the system
08 Oct 2021 17:16:04,741 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119181/Smoke_Inhalation_BALF_(+)_2021-10-08_12-49-38/Smoke_Inhalation_BALF_(+).skyd into the system
08 Oct 2021 17:16:04,742 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119181/Smoke_Inhalation_BALF_(+)_2021-10-08_12-49-38/Smoke_Inhalation_BALF_(+).skyd into the system
08 Oct 2021 17:16:04,742 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119181/Smoke_Inhalation_BALF_(+)_2021-10-08_12-49-38.sky.zip into the system
08 Oct 2021 17:16:04,743 INFO : Starting import from Smoke_Inhalation_BALF_(+)_2021-10-08_12-49-38.sky.zip
08 Oct 2021 17:16:04,746 INFO : Starting to import Skyline document from Smoke_Inhalation_BALF_(+)_2021-10-08_12-49-38.sky.zip
08 Oct 2021 17:16:04,763 INFO : Expanding Smoke_Inhalation_BALF_(+).skyd
08 Oct 2021 17:16:05,168 INFO : Expanding Smoke_Inhalation_BALF_(+).sky.view
08 Oct 2021 17:16:05,168 INFO : Expanding Smoke_Inhalation_BALF_(+).sky
08 Oct 2021 17:16:05,193 INFO : Expanding Smoke_Inhalation_BALF_(+).skyl
08 Oct 2021 17:16:05,200 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
08 Oct 2021 17:16:05,354 DEBUG: Starting to load chromatogram headers
08 Oct 2021 17:16:05,360 DEBUG: Done loading chromatogram headers
08 Oct 2021 17:16:05,468 INFO : Inserting ANA (Anandamide)
08 Oct 2021 17:16:05,473 INFO : 1% Done
08 Oct 2021 17:16:05,492 DEBUG: Total molecules inserted: 1
08 Oct 2021 17:16:05,492 INFO : Inserting AC (Acyl carnitine)
08 Oct 2021 17:16:05,515 INFO : 2% Done
08 Oct 2021 17:16:05,575 INFO : 3% Done
08 Oct 2021 17:16:05,614 INFO : 4% Done
08 Oct 2021 17:16:05,648 DEBUG: Total molecules inserted: 8
08 Oct 2021 17:16:05,648 INFO : Inserting LPC (Lyso phosphatidylcholine)
08 Oct 2021 17:16:05,653 INFO : 5% Done
08 Oct 2021 17:16:05,690 INFO : 6% Done
08 Oct 2021 17:16:05,727 INFO : 7% Done
08 Oct 2021 17:16:05,763 INFO : 8% Done
08 Oct 2021 17:16:05,836 INFO : 9% Done
08 Oct 2021 17:16:05,872 INFO : 10% Done
08 Oct 2021 17:16:05,910 INFO : 11% Done
08 Oct 2021 17:16:05,942 DEBUG: Total molecules inserted: 8
08 Oct 2021 17:16:05,942 INFO : Inserting LPE (Lyso phosphatidylethanolamine)
08 Oct 2021 17:16:05,948 INFO : 12% Done
08 Oct 2021 17:16:05,985 INFO : 13% Done
08 Oct 2021 17:16:06,022 INFO : 14% Done
08 Oct 2021 17:16:06,059 INFO : 15% Done
08 Oct 2021 17:16:06,091 DEBUG: Total molecules inserted: 4
08 Oct 2021 17:16:06,091 INFO : Inserting DG (Diacylglycerol)
08 Oct 2021 17:16:06,136 INFO : 16% Done
08 Oct 2021 17:16:06,174 DEBUG: Total molecules inserted: 4
08 Oct 2021 17:16:06,174 INFO : Inserting SM (Sphingomyelin)
08 Oct 2021 17:16:06,178 INFO : 17% Done
08 Oct 2021 17:16:06,216 INFO : 18% Done
08 Oct 2021 17:16:06,271 INFO : 19% Done
08 Oct 2021 17:16:06,306 INFO : 20% Done
08 Oct 2021 17:16:06,344 INFO : 21% Done
08 Oct 2021 17:16:06,401 INFO : 22% Done
08 Oct 2021 17:16:06,441 INFO : 23% Done
08 Oct 2021 17:16:06,479 INFO : 24% Done
08 Oct 2021 17:16:06,519 INFO : 25% Done
08 Oct 2021 17:16:06,603 INFO : 26% Done
08 Oct 2021 17:16:06,651 INFO : 27% Done
08 Oct 2021 17:16:06,696 DEBUG: Total molecules inserted: 29
08 Oct 2021 17:16:06,696 INFO : Inserting CE (Cholesterol ester)
08 Oct 2021 17:16:06,700 INFO : 28% Done
08 Oct 2021 17:16:06,738 INFO : 29% Done
08 Oct 2021 17:16:06,755 DEBUG: Total molecules inserted: 3
08 Oct 2021 17:16:06,755 INFO : Inserting PC (Phosphatidylcholine)
08 Oct 2021 17:16:06,761 INFO : 30% Done
08 Oct 2021 17:16:06,805 INFO : 31% Done
08 Oct 2021 17:16:06,894 INFO : 32% Done
08 Oct 2021 17:16:06,951 INFO : 34% Done
08 Oct 2021 17:16:07,016 INFO : 35% Done
08 Oct 2021 17:16:07,090 INFO : 37% Done
08 Oct 2021 17:16:07,177 INFO : 38% Done
08 Oct 2021 17:16:07,226 INFO : 39% Done
08 Oct 2021 17:16:07,265 INFO : 40% Done
08 Oct 2021 17:16:07,345 INFO : 42% Done
08 Oct 2021 17:16:07,410 INFO : 43% Done
08 Oct 2021 17:16:07,485 INFO : 45% Done
08 Oct 2021 17:16:07,572 INFO : 46% Done
08 Oct 2021 17:16:07,637 INFO : 48% Done
08 Oct 2021 17:16:07,703 INFO : 49% Done
08 Oct 2021 17:16:07,769 INFO : 50% Done
08 Oct 2021 17:16:07,834 INFO : 52% Done
08 Oct 2021 17:16:07,888 DEBUG: Total molecules inserted: 20
08 Oct 2021 17:16:07,888 INFO : Inserting PE (Phosphatidylethanolamine)
08 Oct 2021 17:16:07,896 INFO : 53% Done
08 Oct 2021 17:16:07,945 INFO : 54% Done
08 Oct 2021 17:16:07,987 DEBUG: Total molecules inserted: 2
08 Oct 2021 17:16:07,987 INFO : Inserting PC(O/P-) (Akyl/alkenyl ether phosphatidylcholine)
08 Oct 2021 17:16:07,993 INFO : 55% Done
08 Oct 2021 17:16:08,037 INFO : 56% Done
08 Oct 2021 17:16:08,079 INFO : 57% Done
08 Oct 2021 17:16:08,121 INFO : 58% Done
08 Oct 2021 17:16:08,157 INFO : 59% Done
08 Oct 2021 17:16:08,188 DEBUG: Total molecules inserted: 5
08 Oct 2021 17:16:08,189 INFO : Inserting TG (Triacylglycerol)
08 Oct 2021 17:16:08,235 INFO : 60% Done
08 Oct 2021 17:16:08,277 INFO : 61% Done
08 Oct 2021 17:16:08,327 INFO : 62% Done
08 Oct 2021 17:16:08,372 INFO : 63% Done
08 Oct 2021 17:16:08,440 INFO : 64% Done
08 Oct 2021 17:16:08,473 INFO : 65% Done
08 Oct 2021 17:16:08,542 INFO : 66% Done
08 Oct 2021 17:16:08,585 INFO : 67% Done
08 Oct 2021 17:16:08,642 INFO : 68% Done
08 Oct 2021 17:16:08,690 INFO : 69% Done
08 Oct 2021 17:16:08,732 INFO : 70% Done
08 Oct 2021 17:16:08,798 INFO : 71% Done
08 Oct 2021 17:16:08,826 INFO : 72% Done
08 Oct 2021 17:16:08,887 INFO : 73% Done
08 Oct 2021 17:16:08,919 INFO : 74% Done
08 Oct 2021 17:16:09,026 INFO : 75% Done
08 Oct 2021 17:16:09,091 INFO : 76% Done
08 Oct 2021 17:16:09,115 INFO : 77% Done
08 Oct 2021 17:16:09,199 INFO : 78% Done
08 Oct 2021 17:16:09,236 INFO : 79% Done
08 Oct 2021 17:16:09,309 INFO : 80% Done
08 Oct 2021 17:16:09,353 INFO : 81% Done
08 Oct 2021 17:16:09,405 INFO : 82% Done
08 Oct 2021 17:16:09,427 INFO : 83% Done
08 Oct 2021 17:16:09,508 INFO : 84% Done
08 Oct 2021 17:16:09,538 INFO : 85% Done
08 Oct 2021 17:16:09,589 INFO : 86% Done
08 Oct 2021 17:16:09,644 INFO : 87% Done
08 Oct 2021 17:16:09,686 INFO : 88% Done
08 Oct 2021 17:16:09,745 INFO : 89% Done
08 Oct 2021 17:16:09,745 DEBUG: Inserted 50 molecules
08 Oct 2021 17:16:09,810 INFO : 90% Done
08 Oct 2021 17:16:09,845 INFO : 91% Done
08 Oct 2021 17:16:09,897 INFO : 92% Done
08 Oct 2021 17:16:09,932 INFO : 93% Done
08 Oct 2021 17:16:09,987 INFO : 94% Done
08 Oct 2021 17:16:10,041 INFO : 95% Done
08 Oct 2021 17:16:10,082 INFO : 96% Done
08 Oct 2021 17:16:10,116 INFO : 97% Done
08 Oct 2021 17:16:10,174 INFO : 98% Done
08 Oct 2021 17:16:10,204 DEBUG: Total molecules inserted: 68
08 Oct 2021 17:16:10,205 INFO : Done parsing Skyline document.
08 Oct 2021 17:16:13,688 INFO : Creating and populating temp tables for Proportion values
08 Oct 2021 17:16:13,730 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2021 17:16:13,889 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2021 17:16:13,982 INFO : Cleaning up temp tables
08 Oct 2021 17:16:14,231 INFO : Completed import of Skyline document from Smoke_Inhalation_BALF_(+)_2021-10-08_12-49-38.sky.zip
08 Oct 2021 17:16:14,234 INFO : 100% Done
08 Oct 2021 17:16:14,239 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119181/Smoke_Inhalation_BALF_(+)_2021-10-08_12-49-38.sky.zip into the system
08 Oct 2021 17:16:14,239 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119180/Smoke_Inhalation_BALF_(-)_2021-10-08_12-47-55/Smoke_Inhalation_BALF_(-).skyd into the system
08 Oct 2021 17:16:14,240 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119180/Smoke_Inhalation_BALF_(-)_2021-10-08_12-47-55/Smoke_Inhalation_BALF_(-).skyd into the system
08 Oct 2021 17:16:14,240 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119180/Smoke_Inhalation_BALF_(-)_2021-10-08_12-47-55.sky.zip into the system
08 Oct 2021 17:16:14,241 INFO : Starting import from Smoke_Inhalation_BALF_(-)_2021-10-08_12-47-55.sky.zip
08 Oct 2021 17:16:14,243 INFO : Starting to import Skyline document from Smoke_Inhalation_BALF_(-)_2021-10-08_12-47-55.sky.zip
08 Oct 2021 17:16:14,275 INFO : Expanding Smoke_Inhalation_BALF_(-).skyd
08 Oct 2021 17:16:14,992 INFO : Expanding Smoke_Inhalation_BALF_(-).sky.view
08 Oct 2021 17:16:14,993 INFO : Expanding Smoke_Inhalation_BALF_(-).sky
08 Oct 2021 17:16:15,039 INFO : Expanding Smoke_Inhalation_BALF_(-).skyl
08 Oct 2021 17:16:15,083 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
08 Oct 2021 17:16:15,346 DEBUG: Starting to load chromatogram headers
08 Oct 2021 17:16:15,354 DEBUG: Done loading chromatogram headers
08 Oct 2021 17:16:15,451 INFO : Inserting FA (Fatty acyl)
08 Oct 2021 17:16:15,474 INFO : 1% Done
08 Oct 2021 17:16:15,556 INFO : 2% Done
08 Oct 2021 17:16:15,623 INFO : 3% Done
08 Oct 2021 17:16:15,707 INFO : 4% Done
08 Oct 2021 17:16:15,778 INFO : 5% Done
08 Oct 2021 17:16:15,863 INFO : 6% Done
08 Oct 2021 17:16:15,947 INFO : 7% Done
08 Oct 2021 17:16:16,021 INFO : 8% Done
08 Oct 2021 17:16:16,106 INFO : 9% Done
08 Oct 2021 17:16:16,181 INFO : 10% Done
08 Oct 2021 17:16:16,277 INFO : 11% Done
08 Oct 2021 17:16:16,315 DEBUG: Inserted 50 molecules
08 Oct 2021 17:16:16,333 DEBUG: Total molecules inserted: 50
08 Oct 2021 17:16:16,333 INFO : Inserting FAHFA (Fatty acid esters of hydroxy fatty acids)
08 Oct 2021 17:16:16,358 INFO : 12% Done
08 Oct 2021 17:16:16,437 DEBUG: Total molecules inserted: 5
08 Oct 2021 17:16:16,437 INFO : Inserting LPE (Lyso phosphatidylethanolamine)
08 Oct 2021 17:16:16,443 INFO : 13% Done
08 Oct 2021 17:16:16,532 INFO : 14% Done
08 Oct 2021 17:16:16,623 INFO : 15% Done
08 Oct 2021 17:16:16,712 INFO : 16% Done
08 Oct 2021 17:16:16,738 DEBUG: Total molecules inserted: 10
08 Oct 2021 17:16:16,738 INFO : Inserting LPC (Lyso phosphatidylcholine)
08 Oct 2021 17:16:16,823 INFO : 17% Done
08 Oct 2021 17:16:16,900 INFO : 18% Done
08 Oct 2021 17:16:17,005 INFO : 19% Done
08 Oct 2021 17:16:17,080 INFO : 20% Done
08 Oct 2021 17:16:17,153 DEBUG: Total molecules inserted: 16
08 Oct 2021 17:16:17,153 INFO : Inserting Cer (Ceramide)
08 Oct 2021 17:16:17,163 INFO : 21% Done
08 Oct 2021 17:16:17,234 INFO : 22% Done
08 Oct 2021 17:16:17,329 INFO : 23% Done
08 Oct 2021 17:16:17,401 INFO : 24% Done
08 Oct 2021 17:16:17,503 INFO : 25% Done
08 Oct 2021 17:16:17,711 INFO : 27% Done
08 Oct 2021 17:16:17,823 INFO : 28% Done
08 Oct 2021 17:16:17,970 INFO : 29% Done
08 Oct 2021 17:16:18,068 INFO : 30% Done
08 Oct 2021 17:16:18,179 INFO : 32% Done
08 Oct 2021 17:16:18,321 INFO : 33% Done
08 Oct 2021 17:16:18,417 INFO : 34% Done
08 Oct 2021 17:16:18,499 DEBUG: Total molecules inserted: 13
08 Oct 2021 17:16:18,499 INFO : Inserting PE (Phosphatidylethanolamine)
08 Oct 2021 17:16:18,506 INFO : 35% Done
08 Oct 2021 17:16:18,576 INFO : 36% Done
08 Oct 2021 17:16:18,656 INFO : 37% Done
08 Oct 2021 17:16:18,784 INFO : 38% Done
08 Oct 2021 17:16:18,882 INFO : 39% Done
08 Oct 2021 17:16:18,980 INFO : 40% Done
08 Oct 2021 17:16:19,072 INFO : 41% Done
08 Oct 2021 17:16:19,170 INFO : 42% Done
08 Oct 2021 17:16:19,301 INFO : 43% Done
08 Oct 2021 17:16:19,425 INFO : 44% Done
08 Oct 2021 17:16:19,480 INFO : 45% Done
08 Oct 2021 17:16:19,609 INFO : 46% Done
08 Oct 2021 17:16:19,697 DEBUG: Total molecules inserted: 28
08 Oct 2021 17:16:19,697 INFO : Inserting PE(O/P-) (Alkyl/alkenyl ether phosphatidylethanolamine)
08 Oct 2021 17:16:19,703 INFO : 47% Done
08 Oct 2021 17:16:19,807 INFO : 48% Done
08 Oct 2021 17:16:19,909 INFO : 49% Done
08 Oct 2021 17:16:19,977 INFO : 50% Done
08 Oct 2021 17:16:20,082 INFO : 51% Done
08 Oct 2021 17:16:20,154 INFO : 52% Done
08 Oct 2021 17:16:20,262 INFO : 53% Done
08 Oct 2021 17:16:20,334 INFO : 54% Done
08 Oct 2021 17:16:20,454 INFO : 55% Done
08 Oct 2021 17:16:20,517 DEBUG: Total molecules inserted: 23
08 Oct 2021 17:16:20,517 INFO : Inserting SM (Sphingomyelin)
08 Oct 2021 17:16:20,548 INFO : 56% Done
08 Oct 2021 17:16:20,653 INFO : 57% Done
08 Oct 2021 17:16:20,742 INFO : 58% Done
08 Oct 2021 17:16:20,818 DEBUG: Total molecules inserted: 11
08 Oct 2021 17:16:20,818 INFO : Inserting HexCer (Glc/Glu Glycosphingolipid)
08 Oct 2021 17:16:20,830 INFO : 59% Done
08 Oct 2021 17:16:20,906 INFO : 60% Done
08 Oct 2021 17:16:20,999 INFO : 61% Done
08 Oct 2021 17:16:21,093 INFO : 62% Done
08 Oct 2021 17:16:21,183 INFO : 63% Done
08 Oct 2021 17:16:21,362 DEBUG: Total molecules inserted: 6
08 Oct 2021 17:16:21,362 INFO : Inserting PC (Phosphatidylcholine)
08 Oct 2021 17:16:21,370 INFO : 64% Done
08 Oct 2021 17:16:21,455 INFO : 65% Done
08 Oct 2021 17:16:21,539 INFO : 66% Done
08 Oct 2021 17:16:21,652 INFO : 67% Done
08 Oct 2021 17:16:21,737 INFO : 68% Done
08 Oct 2021 17:16:21,819 INFO : 69% Done
08 Oct 2021 17:16:21,904 INFO : 70% Done
08 Oct 2021 17:16:22,017 INFO : 71% Done
08 Oct 2021 17:16:22,104 INFO : 72% Done
08 Oct 2021 17:16:22,225 INFO : 73% Done
08 Oct 2021 17:16:22,315 INFO : 74% Done
08 Oct 2021 17:16:22,497 INFO : 75% Done
08 Oct 2021 17:16:22,582 INFO : 76% Done
08 Oct 2021 17:16:22,665 INFO : 77% Done
08 Oct 2021 17:16:22,701 DEBUG: Total molecules inserted: 31
08 Oct 2021 17:16:22,701 INFO : Inserting PG (Phosphatidylglycerol)
08 Oct 2021 17:16:22,756 INFO : 78% Done
08 Oct 2021 17:16:22,845 INFO : 79% Done
08 Oct 2021 17:16:22,987 INFO : 80% Done
08 Oct 2021 17:16:23,068 INFO : 81% Done
08 Oct 2021 17:16:23,152 DEBUG: Total molecules inserted: 10
08 Oct 2021 17:16:23,152 INFO : Inserting PC O/P (Akyl/alkenyl ether phosphatidylcholine)
08 Oct 2021 17:16:23,157 INFO : 82% Done
08 Oct 2021 17:16:23,267 INFO : 83% Done
08 Oct 2021 17:16:23,346 INFO : 84% Done
08 Oct 2021 17:16:23,431 INFO : 85% Done
08 Oct 2021 17:16:23,535 INFO : 86% Done
08 Oct 2021 17:16:23,712 INFO : 87% Done
08 Oct 2021 17:16:23,809 INFO : 88% Done
08 Oct 2021 17:16:23,912 INFO : 89% Done
08 Oct 2021 17:16:23,992 INFO : 90% Done
08 Oct 2021 17:16:24,099 INFO : 91% Done
08 Oct 2021 17:16:24,199 INFO : 92% Done
08 Oct 2021 17:16:24,256 DEBUG: Total molecules inserted: 26
08 Oct 2021 17:16:24,256 INFO : Inserting PI (Phosphatidylinositol)
08 Oct 2021 17:16:24,265 INFO : 93% Done
08 Oct 2021 17:16:24,406 INFO : 94% Done
08 Oct 2021 17:16:24,505 INFO : 95% Done
08 Oct 2021 17:16:24,587 INFO : 96% Done
08 Oct 2021 17:16:24,690 INFO : 97% Done
08 Oct 2021 17:16:24,772 INFO : 98% Done
08 Oct 2021 17:16:24,847 DEBUG: Total molecules inserted: 13
08 Oct 2021 17:16:24,848 INFO : Done parsing Skyline document.
08 Oct 2021 17:17:18,702 INFO : Creating and populating temp tables for Proportion values
08 Oct 2021 17:17:18,758 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2021 17:17:19,010 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2021 17:17:19,170 INFO : Cleaning up temp tables
08 Oct 2021 17:17:19,390 INFO : Completed import of Skyline document from Smoke_Inhalation_BALF_(-)_2021-10-08_12-47-55.sky.zip
08 Oct 2021 17:17:19,393 INFO : 100% Done
08 Oct 2021 17:17:19,397 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Smoke%20Inhalation%20and%20SRM%201950_24c14013-0ac1-103a-b54f-fea6ddf5779e/_temp__2021-10-08_17-07-31/export/xar/experiments_and_runs.xar.exploded/Run119180/Smoke_Inhalation_BALF_(-)_2021-10-08_12-47-55.sky.zip into the system
08 Oct 2021 17:17:19,416 INFO : Done importing xar
08 Oct 2021 17:17:19,418 INFO : Loading pages and webpart properties
08 Oct 2021 17:17:19,473 INFO : Done importing pages and webpart properties
08 Oct 2021 17:17:19,473 INFO :
08 Oct 2021 17:17:19,473 INFO : Experiment import completed successfully.
08 Oct 2021 17:17:19,473 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
08 Oct 2021 17:17:19,509 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
08 Oct 2021 17:17:19,509 INFO :
08 Oct 2021 17:17:19,509 INFO : Finishing up experiment copy.
08 Oct 2021 17:17:19,511 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
08 Oct 2021 17:17:19,513 INFO : Assigning a DOI.
08 Oct 2021 17:17:20,620 INFO : Assigned DOI: 10.6069/f66r-1203
08 Oct 2021 17:17:20,624 INFO : Updating access URL to point to the new copy of the data.
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08 Oct 2021 17:17:20,710 INFO : Making folder public.
08 Oct 2021 17:17:20,717 INFO : Hiding the Data Pipeline tab.
08 Oct 2021 17:17:20,811 INFO : Emailing submitter.
08 Oct 2021 17:17:20,921 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'