Copying experiment: Selected reaction monitoring based analysis of proteins in liver tissue of Labeo rohita: /Panorama Public/2021/IIT Bombay Proteomics

Copying experiment: Selected reaction monitoring based analysis of proteins in liver tissue of Labeo rohita

IIT Bombay Proteomics - SRM_ROHU_Liver_Proteomics

Job Status

Created:

2021-10-07 20:02:50

Modified:

2021-10-07 20:03:49

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: Selected reaction monitoring based analysis of proteins in liver tissue of Labeo rohita

File Path:

/data/labkey/files/Panorama Public/2021/IIT Bombay Proteomics - SRM_ROHU_Liver_Proteomics/@files/Experiment_1372.log

Files:

Experiment_1372.log

Join job:

Status	Description

Split jobs:

Status	Description

Completed Runs:

19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip
Experimental_QC_run_2021-10-06_14-17-15.sky.zip

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Log File

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07 Oct 2021 20:02:50,169 INFO : Copying experiment "Selected reaction monitoring based analysis of proteins in liver tissue of Labeo rohita" from folder /IIT Bombay - Proteomics/SRM_ROHU_Liver_Proteomics to /Panorama Public/2021/IIT Bombay Proteomics - SRM_ROHU_Liver_Proteomics

07 Oct 2021 20:02:50,169 INFO : =======================================

07 Oct 2021 20:02:50,419 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

07 Oct 2021 20:02:50,419 INFO :

07 Oct 2021 20:02:50,420 INFO : Exporting experiment.

07 Oct 2021 20:03:11,883 INFO :

07 Oct 2021 20:03:11,884 INFO : Experiment export completed successfully.

07 Oct 2021 20:03:11,884 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

07 Oct 2021 20:03:11,954 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

07 Oct 2021 20:03:11,954 INFO :

07 Oct 2021 20:03:11,954 INFO : Importing experiment.

07 Oct 2021 20:03:11,960 INFO : Loading folder properties (folder type, settings and active modules)

07 Oct 2021 20:03:12,059 INFO : Done importing folder properties (folder type, settings and active modules)

07 Oct 2021 20:03:12,065 INFO : Loading etl definitions

07 Oct 2021 20:03:12,071 INFO : Loading wikis

07 Oct 2021 20:03:12,100 INFO : 2 wikis imported

07 Oct 2021 20:03:12,100 INFO : Done importing wikis

07 Oct 2021 20:03:12,100 INFO : Starting to copy files

07 Oct 2021 20:03:20,668 INFO : Copied 45 files

07 Oct 2021 20:03:20,668 INFO : Ensuring exp.data rows exist for imported files

07 Oct 2021 20:03:20,944 INFO : Starting Sample Type and Data Class import

07 Oct 2021 20:03:20,945 INFO : No types XAR file to process.

07 Oct 2021 20:03:20,945 INFO : Finished importing Sample Types and Data Classes

07 Oct 2021 20:03:20,947 INFO : Loading xar

07 Oct 2021 20:03:22,018 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip'

07 Oct 2021 20:03:22,021 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip.Core'

07 Oct 2021 20:03:22,023 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip.Output'

07 Oct 2021 20:03:22,023 DEBUG: Protocol import complete

07 Oct 2021 20:03:22,025 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9181:Selected+reaction+monitoring+based+analysis+of+proteins+in+liver+tissue+of+Labeo+rohita'

07 Oct 2021 20:03:22,025 DEBUG: Experiment/Run group import complete

07 Oct 2021 20:03:22,035 DEBUG: Protocol action set import complete

07 Oct 2021 20:03:22,050 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip'

07 Oct 2021 20:03:22,062 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9181:b561d7fa-089d-103a-b54f-fea6ddf5779e'

07 Oct 2021 20:03:22,066 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9181:b561d7a4-089d-103a-b54f-fea6ddf5779e'

07 Oct 2021 20:03:22,067 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip.Core'

07 Oct 2021 20:03:22,071 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip.Output'

07 Oct 2021 20:03:22,071 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9181:b561d8a8-089d-103a-b54f-fea6ddf5779e'

07 Oct 2021 20:03:22,079 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip'

07 Oct 2021 20:03:22,084 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9181:074f6fa0-08b0-103a-b54f-fea6ddf5779e'

07 Oct 2021 20:03:22,090 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9181:074f6f8f-08b0-103a-b54f-fea6ddf5779e'

07 Oct 2021 20:03:22,090 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip.Core'

07 Oct 2021 20:03:22,092 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9181:TargetedMS.ImportSkyZip.Output'

07 Oct 2021 20:03:22,093 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9181:074f6fba-08b0-103a-b54f-fea6ddf5779e'

07 Oct 2021 20:03:22,096 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118730/19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24/19082021_SRM_Rohu_Liver_Method_optimisation.skyd into the system

07 Oct 2021 20:03:22,098 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118730/19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24/19082021_SRM_Rohu_Liver_Method_optimisation.skyd into the system

07 Oct 2021 20:03:22,098 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118730/19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip into the system

07 Oct 2021 20:03:22,100 INFO : Starting import from 19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip

07 Oct 2021 20:03:22,105 INFO : Starting to import Skyline document from 19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip

07 Oct 2021 20:03:22,106 INFO : Expanding Liver_SF.blib

07 Oct 2021 20:03:22,912 INFO : Expanding Liver_SS.blib

07 Oct 2021 20:03:23,829 INFO : Expanding Liver_UF.blib

07 Oct 2021 20:03:24,100 INFO : Expanding Liver_UIS.blib

07 Oct 2021 20:03:24,592 INFO : Expanding 19082021_SRM_Rohu_Liver_Method_optimisation.skyd

07 Oct 2021 20:03:24,610 INFO : Expanding 19082021_SRM_Rohu_Liver_Method_optimisation.sky.view

07 Oct 2021 20:03:24,610 INFO : Expanding 19082021_SRM_Rohu_Liver_Method_optimisation.sky

07 Oct 2021 20:03:24,620 INFO : Expanding 19082021_SRM_Rohu_Liver_Method_optimisation.skyl

07 Oct 2021 20:03:24,634 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

07 Oct 2021 20:03:24,648 INFO : 1% Done

07 Oct 2021 20:03:24,718 DEBUG: Starting to load chromatogram headers

07 Oct 2021 20:03:24,722 DEBUG: Done loading chromatogram headers

07 Oct 2021 20:03:24,802 INFO : Inserting sp|P01009|A1AT_HUMAN

07 Oct 2021 20:03:24,815 INFO : 2% Done

07 Oct 2021 20:03:24,849 DEBUG: Total peptides inserted: 1

07 Oct 2021 20:03:24,854 INFO : Inserting tr|A0A498MEV5|A0A498MEV5_LABRO

07 Oct 2021 20:03:24,895 INFO : 3% Done

07 Oct 2021 20:03:24,923 INFO : 4% Done

07 Oct 2021 20:03:24,950 INFO : 5% Done

07 Oct 2021 20:03:24,979 INFO : 6% Done

07 Oct 2021 20:03:25,037 INFO : 7% Done

07 Oct 2021 20:03:25,074 INFO : 8% Done

07 Oct 2021 20:03:25,102 INFO : 9% Done

07 Oct 2021 20:03:25,128 INFO : 10% Done

07 Oct 2021 20:03:25,182 INFO : 11% Done

07 Oct 2021 20:03:25,208 INFO : 12% Done

07 Oct 2021 20:03:25,228 INFO : 13% Done

07 Oct 2021 20:03:25,266 INFO : 14% Done

07 Oct 2021 20:03:25,287 DEBUG: Total peptides inserted: 15

07 Oct 2021 20:03:25,291 INFO : Inserting tr|A0A498LUC6|A0A498LUC6_LABRO

07 Oct 2021 20:03:25,299 INFO : 15% Done

07 Oct 2021 20:03:25,338 INFO : 16% Done

07 Oct 2021 20:03:25,365 INFO : 17% Done

07 Oct 2021 20:03:25,381 INFO : 18% Done

07 Oct 2021 20:03:25,418 INFO : 19% Done

07 Oct 2021 20:03:25,445 INFO : 20% Done

07 Oct 2021 20:03:25,464 INFO : 21% Done

07 Oct 2021 20:03:25,484 INFO : 22% Done

07 Oct 2021 20:03:25,521 INFO : 23% Done

07 Oct 2021 20:03:25,545 INFO : 24% Done

07 Oct 2021 20:03:25,572 INFO : 25% Done

07 Oct 2021 20:03:25,596 INFO : 26% Done

07 Oct 2021 20:03:25,631 INFO : 27% Done

07 Oct 2021 20:03:25,646 INFO : 28% Done

07 Oct 2021 20:03:25,662 INFO : 29% Done

07 Oct 2021 20:03:25,679 INFO : 30% Done

07 Oct 2021 20:03:25,716 INFO : 31% Done

07 Oct 2021 20:03:25,740 DEBUG: Total peptides inserted: 23

07 Oct 2021 20:03:25,744 INFO : Inserting tr|A0A498L7I0|A0A498L7I0_LABRO

07 Oct 2021 20:03:25,754 INFO : 33% Done

07 Oct 2021 20:03:25,782 INFO : 34% Done

07 Oct 2021 20:03:25,816 INFO : 35% Done

07 Oct 2021 20:03:25,841 INFO : 36% Done

07 Oct 2021 20:03:25,871 INFO : 38% Done

07 Oct 2021 20:03:25,909 INFO : 39% Done

07 Oct 2021 20:03:25,943 INFO : 40% Done

07 Oct 2021 20:03:25,956 INFO : 41% Done

07 Oct 2021 20:03:25,974 INFO : 42% Done

07 Oct 2021 20:03:26,007 INFO : 43% Done

07 Oct 2021 20:03:26,035 INFO : 45% Done

07 Oct 2021 20:03:26,066 INFO : 46% Done

07 Oct 2021 20:03:26,101 INFO : 48% Done

07 Oct 2021 20:03:26,138 INFO : 49% Done

07 Oct 2021 20:03:26,153 INFO : 50% Done

07 Oct 2021 20:03:26,185 DEBUG: Total peptides inserted: 24

07 Oct 2021 20:03:26,188 INFO : Inserting tr|A0A498NRR8|A0A498NRR8_LABRO

07 Oct 2021 20:03:26,193 INFO : 51% Done

07 Oct 2021 20:03:26,214 INFO : 53% Done

07 Oct 2021 20:03:26,240 INFO : 54% Done

07 Oct 2021 20:03:26,265 INFO : 55% Done

07 Oct 2021 20:03:26,285 INFO : 56% Done

07 Oct 2021 20:03:26,308 INFO : 57% Done

07 Oct 2021 20:03:26,327 INFO : 58% Done

07 Oct 2021 20:03:26,367 INFO : 59% Done

07 Oct 2021 20:03:26,391 INFO : 61% Done

07 Oct 2021 20:03:26,412 INFO : 62% Done

07 Oct 2021 20:03:26,443 INFO : 63% Done

07 Oct 2021 20:03:26,468 INFO : 64% Done

07 Oct 2021 20:03:26,491 INFO : 65% Done

07 Oct 2021 20:03:26,508 INFO : 66% Done

07 Oct 2021 20:03:26,544 INFO : 67% Done

07 Oct 2021 20:03:26,559 DEBUG: Total peptides inserted: 18

07 Oct 2021 20:03:26,563 INFO : Inserting tr|A0A498M8E6|A0A498M8E6_LABRO

07 Oct 2021 20:03:26,567 INFO : 68% Done

07 Oct 2021 20:03:26,583 INFO : 69% Done

07 Oct 2021 20:03:26,604 INFO : 70% Done

07 Oct 2021 20:03:26,643 INFO : 71% Done

07 Oct 2021 20:03:26,663 INFO : 72% Done

07 Oct 2021 20:03:26,677 INFO : 73% Done

07 Oct 2021 20:03:26,696 INFO : 74% Done

07 Oct 2021 20:03:26,733 INFO : 75% Done

07 Oct 2021 20:03:26,750 INFO : 76% Done

07 Oct 2021 20:03:26,764 INFO : 77% Done

07 Oct 2021 20:03:26,782 INFO : 78% Done

07 Oct 2021 20:03:26,819 INFO : 79% Done

07 Oct 2021 20:03:26,844 INFO : 80% Done

07 Oct 2021 20:03:26,856 DEBUG: Total peptides inserted: 17

07 Oct 2021 20:03:26,858 INFO : Done parsing Skyline document.

07 Oct 2021 20:03:26,861 INFO : Calculating fold changes

07 Oct 2021 20:03:26,862 DEBUG: Calculating fold change for group comparison UIS vs SF, 1 of 6

07 Oct 2021 20:03:27,932 INFO : 83% Done

07 Oct 2021 20:03:27,933 DEBUG: Calculating fold change for group comparison UIS vs SS, 2 of 6

07 Oct 2021 20:03:28,948 INFO : 86% Done

07 Oct 2021 20:03:28,948 DEBUG: Calculating fold change for group comparison UIS vs UF, 3 of 6

07 Oct 2021 20:03:29,972 INFO : 89% Done

07 Oct 2021 20:03:29,972 DEBUG: Calculating fold change for group comparison UIS_vs_SF, 4 of 6

07 Oct 2021 20:03:30,981 INFO : 92% Done

07 Oct 2021 20:03:30,981 DEBUG: Calculating fold change for group comparison UIS_vs_SS, 5 of 6

07 Oct 2021 20:03:31,985 INFO : 95% Done

07 Oct 2021 20:03:31,986 DEBUG: Calculating fold change for group comparison UIS_vs_UF, 6 of 6

07 Oct 2021 20:03:33,121 INFO : 98% Done

07 Oct 2021 20:03:33,121 INFO : Done calculating fold changes.

07 Oct 2021 20:03:44,594 INFO : Creating and populating temp tables for Proportion values

07 Oct 2021 20:03:44,615 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

07 Oct 2021 20:03:44,665 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

07 Oct 2021 20:03:44,704 INFO : Cleaning up temp tables

07 Oct 2021 20:03:44,949 INFO : Completed import of Skyline document from 19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip

07 Oct 2021 20:03:44,952 INFO : 100% Done

07 Oct 2021 20:03:44,956 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118730/19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip into the system

07 Oct 2021 20:03:44,956 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118734/Experimental_QC_run_2021-10-06_14-17-15/Experimental_QC_run.skyd into the system

07 Oct 2021 20:03:44,957 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118734/Experimental_QC_run_2021-10-06_14-17-15/Experimental_QC_run.skyd into the system

07 Oct 2021 20:03:44,957 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118734/Experimental_QC_run_2021-10-06_14-17-15.sky.zip into the system

07 Oct 2021 20:03:44,958 INFO : Starting import from Experimental_QC_run_2021-10-06_14-17-15.sky.zip

07 Oct 2021 20:03:44,961 INFO : Starting to import Skyline document from Experimental_QC_run_2021-10-06_14-17-15.sky.zip

07 Oct 2021 20:03:44,962 INFO : Expanding Experimental_QC_run.skyd

07 Oct 2021 20:03:44,964 INFO : Expanding Experimental_QC_run.sky.view

07 Oct 2021 20:03:44,965 INFO : Expanding Experimental_QC_run.sky

07 Oct 2021 20:03:44,966 INFO : Expanding Experimental_QC_run.skyl

07 Oct 2021 20:03:44,968 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

07 Oct 2021 20:03:44,974 INFO : 3% Done

07 Oct 2021 20:03:44,980 DEBUG: Starting to load chromatogram headers

07 Oct 2021 20:03:44,981 DEBUG: Done loading chromatogram headers

07 Oct 2021 20:03:45,019 INFO : Inserting sp|P04075|ALDOA_HUMAN

07 Oct 2021 20:03:45,041 INFO : 14% Done

07 Oct 2021 20:03:45,089 INFO : 22% Done

07 Oct 2021 20:03:45,111 INFO : 28% Done

07 Oct 2021 20:03:45,127 INFO : 38% Done

07 Oct 2021 20:03:45,143 DEBUG: Total peptides inserted: 4

07 Oct 2021 20:03:45,147 INFO : Inserting sp|P04406|G3P_HUMAN

07 Oct 2021 20:03:45,154 INFO : 45% Done

07 Oct 2021 20:03:45,176 INFO : 55% Done

07 Oct 2021 20:03:45,196 INFO : 67% Done

07 Oct 2021 20:03:45,217 INFO : 72% Done

07 Oct 2021 20:03:45,228 INFO : 80% Done

07 Oct 2021 20:03:45,242 DEBUG: Total peptides inserted: 5

07 Oct 2021 20:03:45,242 INFO : Done parsing Skyline document.

07 Oct 2021 20:03:45,245 INFO : No group comparisons found.

07 Oct 2021 20:03:45,245 INFO : Calculating calibration curves

07 Oct 2021 20:03:45,245 DEBUG: Calculating calibration curve for sp|P04075|ALDOA_HUMAN, 1 of 2

07 Oct 2021 20:03:45,295 INFO : 89% Done

07 Oct 2021 20:03:45,295 DEBUG: Calculating calibration curve for sp|P04406|G3P_HUMAN, 2 of 2

07 Oct 2021 20:03:45,354 INFO : 98% Done

07 Oct 2021 20:03:45,358 INFO : Done calculating calibration curves.

07 Oct 2021 20:03:45,698 INFO : Creating and populating temp tables for Proportion values

07 Oct 2021 20:03:45,709 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

07 Oct 2021 20:03:45,712 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

07 Oct 2021 20:03:45,715 INFO : Cleaning up temp tables

07 Oct 2021 20:03:45,921 INFO : Completed import of Skyline document from Experimental_QC_run_2021-10-06_14-17-15.sky.zip

07 Oct 2021 20:03:45,925 INFO : 100% Done

07 Oct 2021 20:03:45,929 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118734/Experimental_QC_run_2021-10-06_14-17-15.sky.zip into the system

07 Oct 2021 20:03:45,944 INFO : Done importing xar

07 Oct 2021 20:03:45,948 INFO : Loading pages and webpart properties

07 Oct 2021 20:03:46,041 INFO : Done importing pages and webpart properties

07 Oct 2021 20:03:46,041 INFO :

07 Oct 2021 20:03:46,041 INFO : Experiment import completed successfully.

07 Oct 2021 20:03:46,042 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

07 Oct 2021 20:03:46,095 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

07 Oct 2021 20:03:46,095 INFO :

07 Oct 2021 20:03:46,095 INFO : Finishing up experiment copy.

07 Oct 2021 20:03:46,097 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

07 Oct 2021 20:03:46,099 INFO : Assigning a ProteomeXchange ID.

07 Oct 2021 20:03:46,491 INFO : Assigning a DOI.

07 Oct 2021 20:03:48,633 INFO : Assigned DOI: 10.6069/5jcm-n822

07 Oct 2021 20:03:48,636 INFO : Updating access URL to point to the new copy of the data.

07 Oct 2021 20:03:48,642 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

07 Oct 2021 20:03:48,643 INFO : Removing copy permissions given to journal.

07 Oct 2021 20:03:48,660 INFO : Adding read permissions to all users that are folder admins in the source container.

07 Oct 2021 20:03:48,668 INFO : Setting the TargetedMS folder type to 'Experimental Data'

07 Oct 2021 20:03:48,672 INFO : Updating the 'Raw Data' tab configuration

07 Oct 2021 20:03:48,675 INFO : Updating dataFileUrls for run 19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip; targetedms run ID 121982

07 Oct 2021 20:03:48,675 INFO : Updating dataFileUrl...

07 Oct 2021 20:03:48,675 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118730/19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip

07 Oct 2021 20:03:48,675 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics/@files/19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24.sky.zip

07 Oct 2021 20:03:48,678 INFO : Updating dataFileUrl...

07 Oct 2021 20:03:48,679 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118730/19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24/19082021_SRM_Rohu_Liver_Method_optimisation.skyd

07 Oct 2021 20:03:48,679 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics/@files/19082021_SRM_Rohu_Liver_Method_optimisation_2021-10-06_11-48-24/19082021_SRM_Rohu_Liver_Method_optimisation.skyd

07 Oct 2021 20:03:48,683 INFO : Updating dataFileUrls for run Experimental_QC_run_2021-10-06_14-17-15.sky.zip; targetedms run ID 121983

07 Oct 2021 20:03:48,683 INFO : Updating dataFileUrl...

07 Oct 2021 20:03:48,683 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118734/Experimental_QC_run_2021-10-06_14-17-15/Experimental_QC_run.skyd

07 Oct 2021 20:03:48,683 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics/@files/Experimental_QC_run_2021-10-06_14-17-15/Experimental_QC_run.skyd

07 Oct 2021 20:03:48,685 INFO : Updating dataFileUrl...

07 Oct 2021 20:03:48,685 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics_75b73e8f-0a11-103a-b54f-fea6ddf5779e/_temp__2021-10-07_20-02-49/export/xar/experiments_and_runs.xar.exploded/Run118734/Experimental_QC_run_2021-10-06_14-17-15.sky.zip

07 Oct 2021 20:03:48,685 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20SRM_ROHU_Liver_Proteomics/@files/Experimental_QC_run_2021-10-06_14-17-15.sky.zip

07 Oct 2021 20:03:48,687 INFO : Creating a reviewer account.

07 Oct 2021 20:03:48,940 INFO : Created reviewer with email: User panorama+reviewer72@proteinms.net

07 Oct 2021 20:03:48,949 INFO : Hiding the Data Pipeline tab.

07 Oct 2021 20:03:49,055 INFO : Emailing submitter.

07 Oct 2021 20:03:49,187 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'