Copying experiment: Targeted MS based multi-omic analysis of blood plasma from COVID-19 patients to predict survival

MRM Proteomics - COVID 270 panel

Job Status

Created: 2021-08-16 20:06:18
Modified: 2021-08-16 20:08:08
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Targeted MS based multi-omic analysis of blood plasma from COVID-19 patients to predict survival
File Path: /data/labkey/files/Panorama Public/2021/MRM Proteomics - COVID 270 panel/@files/Experiment_1328.log
Files: Experiment_1328.log
Completed Runs: COVID patients_Human Plasma 270 panel upl_2021-08-09_21-50-57.sky.zip

Log File


16 Aug 2021 20:06:18,767 INFO : Copying experiment "Targeted MS based multi-omic analysis of blood plasma from COVID-19 patients to predict survival" from folder /MRM Proteomics/COVID 270 panel to /Panorama Public/2021/MRM Proteomics - COVID 270 panel
16 Aug 2021 20:06:18,767 INFO : =======================================
16 Aug 2021 20:06:18,905 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
16 Aug 2021 20:06:18,905 INFO :
16 Aug 2021 20:06:18,905 INFO : Exporting experiment.
16 Aug 2021 20:06:41,396 INFO :
16 Aug 2021 20:06:41,396 INFO : Experiment export completed successfully.
16 Aug 2021 20:06:41,397 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
16 Aug 2021 20:06:41,452 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
16 Aug 2021 20:06:41,452 INFO :
16 Aug 2021 20:06:41,452 INFO : Importing experiment.
16 Aug 2021 20:06:41,457 INFO : Loading folder properties (folder type, settings and active modules)
16 Aug 2021 20:06:41,541 INFO : Done importing folder properties (folder type, settings and active modules)
16 Aug 2021 20:06:41,545 INFO : Loading etl definitions
16 Aug 2021 20:06:41,548 INFO : Loading wikis
16 Aug 2021 20:06:41,550 INFO : 0 wikis imported
16 Aug 2021 20:06:41,550 INFO : Done importing wikis
16 Aug 2021 20:06:41,550 INFO : Starting to copy files
16 Aug 2021 20:06:48,243 INFO : Copied 159 files
16 Aug 2021 20:06:48,243 INFO : Ensuring exp.data rows exist for imported files
16 Aug 2021 20:06:48,980 INFO : Starting Sample Type and Data Class import
16 Aug 2021 20:06:48,981 INFO : No types XAR file to process.
16 Aug 2021 20:06:48,981 INFO : Finished importing Sample Types and Data Classes
16 Aug 2021 20:06:48,984 INFO : Loading xar
16 Aug 2021 20:06:50,002 INFO : Starting import from COVID patients_Human Plasma 270 panel upl_2021-08-09_21-50-57.sky.zip
16 Aug 2021 20:06:50,007 INFO : Starting to import Skyline document from COVID patients_Human Plasma 270 panel upl_2021-08-09_21-50-57.sky.zip
16 Aug 2021 20:06:50,033 INFO : Expanding COVID patients_Human Plasma 270 panel upl.skyd
16 Aug 2021 20:06:50,540 INFO : Expanding COVID patients_Human Plasma 270 panel upl.sky.view
16 Aug 2021 20:06:50,541 INFO : Expanding COVID patients_Human Plasma 270 panel upl.sky
16 Aug 2021 20:06:50,718 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
16 Aug 2021 20:06:51,399 INFO : Inserting 60 kDa heat shock protein mitochondrial
16 Aug 2021 20:06:51,413 INFO : 1% Done
16 Aug 2021 20:06:51,588 INFO : Inserting 72 KDa type IV collagenase
16 Aug 2021 20:06:51,763 INFO : Inserting 78 kDa glucose-regulated protein
16 Aug 2021 20:06:51,935 INFO : Inserting A disintegrin and metalloproteinase with thrombospondin motifs 2
16 Aug 2021 20:06:51,946 INFO : 2% Done
16 Aug 2021 20:06:52,113 INFO : Inserting A disintegrin and metalloproteinase with thrombospondin motifs 20
16 Aug 2021 20:06:52,297 INFO : Inserting A disintegrin and metalloproteinase with thrombospondin motifs 9
16 Aug 2021 20:06:52,500 INFO : Inserting Actin, aortic smooth muscle
16 Aug 2021 20:06:52,671 INFO : Inserting Adhesion G protein-coupled receptor F5
16 Aug 2021 20:06:52,841 INFO : Inserting Adipocyte plasma membrane-associated protein
16 Aug 2021 20:06:52,850 INFO : 3% Done
16 Aug 2021 20:06:53,005 INFO : Inserting Adiponectin
16 Aug 2021 20:06:53,168 INFO : Inserting ADM
16 Aug 2021 20:06:53,355 INFO : Inserting Afamin
16 Aug 2021 20:06:53,366 INFO : 4% Done
16 Aug 2021 20:06:53,527 INFO : Inserting Alpha-1-acid glycoprotein 1
16 Aug 2021 20:06:53,691 INFO : Inserting Alpha-1-antichymotrypsin
16 Aug 2021 20:06:53,862 INFO : Inserting Alpha-1-antitrypsin
16 Aug 2021 20:06:53,872 INFO : 5% Done
16 Aug 2021 20:06:54,045 INFO : Inserting Alpha-1B-glycoprotein_VAR_018369
16 Aug 2021 20:06:54,211 INFO : Inserting Alpha-2-antiplasmin
16 Aug 2021 20:06:54,381 INFO : Inserting Alpha-2-HS-glycoprotein
16 Aug 2021 20:06:54,390 INFO : 6% Done
16 Aug 2021 20:06:54,554 INFO : Inserting Alpha-2-macroglobulin
16 Aug 2021 20:06:54,746 INFO : Inserting Angiogenin
16 Aug 2021 20:06:54,935 INFO : Inserting Angiopoietin-related protein 3
16 Aug 2021 20:06:55,127 INFO : Inserting Angiotensinogen
16 Aug 2021 20:06:55,302 INFO : Inserting Antithrombin-III
16 Aug 2021 20:06:55,312 INFO : 7% Done
16 Aug 2021 20:06:55,478 INFO : Inserting Apolipoprotein A-I
16 Aug 2021 20:06:55,651 INFO : Inserting Apolipoprotein A-II
16 Aug 2021 20:06:55,816 INFO : Inserting Apolipoprotein A-IV
16 Aug 2021 20:06:55,825 INFO : 8% Done
16 Aug 2021 20:06:55,982 INFO : Inserting Apolipoprotein B-100
16 Aug 2021 20:06:56,149 INFO : Inserting Apolipoprotein C-I
16 Aug 2021 20:06:56,315 INFO : Inserting Apolipoprotein C-II
16 Aug 2021 20:06:56,327 INFO : 9% Done
16 Aug 2021 20:06:56,489 INFO : Inserting Apolipoprotein C-III
16 Aug 2021 20:06:56,655 INFO : Inserting Apolipoprotein C-IV
16 Aug 2021 20:06:56,666 INFO : 10% Done
16 Aug 2021 20:06:56,825 INFO : Inserting Apolipoprotein D
16 Aug 2021 20:06:56,986 INFO : Inserting Apolipoprotein E
16 Aug 2021 20:06:57,158 INFO : Inserting Apolipoprotein F
16 Aug 2021 20:06:57,353 INFO : Inserting Apolipoprotein L1
16 Aug 2021 20:06:57,541 INFO : Inserting Apolipoprotein M
16 Aug 2021 20:06:57,703 INFO : Inserting Apolipoprotein(a)
16 Aug 2021 20:06:57,713 INFO : 11% Done
16 Aug 2021 20:06:57,869 INFO : Inserting Aromatase
16 Aug 2021 20:06:58,035 INFO : Inserting Atrial natriuretic peptide receptor 1
16 Aug 2021 20:06:58,204 INFO : Inserting Attractin
16 Aug 2021 20:06:58,216 INFO : 12% Done
16 Aug 2021 20:06:58,386 INFO : Inserting Autism susceptibility gene 2 protein
16 Aug 2021 20:06:58,568 INFO : Inserting B-cell scaffold protein with ankyrin repeats
16 Aug 2021 20:06:58,578 INFO : 13% Done
16 Aug 2021 20:06:58,738 INFO : Inserting Beta-2-glycoprotein 1
16 Aug 2021 20:06:58,897 INFO : Inserting Beta-2-microglobulin
16 Aug 2021 20:06:59,056 INFO : Inserting Beta-Ala-His dipeptidase
16 Aug 2021 20:06:59,067 INFO : 14% Done
16 Aug 2021 20:06:59,220 INFO : Inserting Beta-nerve growth factor
16 Aug 2021 20:06:59,392 INFO : Inserting Biotinidase
16 Aug 2021 20:06:59,569 INFO : Inserting C4b-binding protein alpha chain
16 Aug 2021 20:06:59,798 INFO : Inserting Cadherin-13
16 Aug 2021 20:06:59,980 INFO : Inserting Cadherin-5
16 Aug 2021 20:07:00,154 INFO : Inserting Calcitonin gene-related peptide 1
16 Aug 2021 20:07:00,163 INFO : 15% Done
16 Aug 2021 20:07:00,343 INFO : Inserting Calcitonin
16 Aug 2021 20:07:00,506 INFO : Inserting Calponin-1
16 Aug 2021 20:07:00,515 INFO : 16% Done
16 Aug 2021 20:07:00,679 INFO : Inserting Carbonic anhydrase 1
16 Aug 2021 20:07:00,839 INFO : Inserting Carboxypeptidase B2
16 Aug 2021 20:07:01,018 INFO : Inserting Carboxypeptidase N catalytic chain
16 Aug 2021 20:07:01,029 INFO : 17% Done
16 Aug 2021 20:07:01,204 INFO : Inserting Carboxypeptidase N subunit 2
16 Aug 2021 20:07:01,370 INFO : Inserting Cartilage acidic protein 1
16 Aug 2021 20:07:01,531 INFO : Inserting Cathelicidin antimicrobial peptide
16 Aug 2021 20:07:01,541 INFO : 18% Done
16 Aug 2021 20:07:01,699 INFO : Inserting Cation-independent mannose-6-phosphate receptor
16 Aug 2021 20:07:01,869 INFO : Inserting CD40 ligand
16 Aug 2021 20:07:02,029 INFO : Inserting CD44 antigen
16 Aug 2021 20:07:02,194 INFO : Inserting CD5 antigen-like
16 Aug 2021 20:07:02,353 INFO : Inserting cDNA FLJ53327, highly similar to Gelsolin (NOT REVIEWED)
16 Aug 2021 20:07:02,363 INFO : 19% Done
16 Aug 2021 20:07:02,519 INFO : Inserting Ceruloplasmin
16 Aug 2021 20:07:02,685 INFO : Inserting Cholesteryl ester transfer protein
16 Aug 2021 20:07:02,848 INFO : Inserting Cholinesterase
16 Aug 2021 20:07:02,858 INFO : 20% Done
16 Aug 2021 20:07:03,010 INFO : Inserting Chromogranin-A
16 Aug 2021 20:07:03,186 INFO : Inserting Claudin-5
16 Aug 2021 20:07:03,358 INFO : Inserting Clusterin
16 Aug 2021 20:07:03,367 INFO : 21% Done
16 Aug 2021 20:07:03,528 INFO : Inserting Coagulation factor IX
16 Aug 2021 20:07:03,697 INFO : Inserting Coagulation factor V
16 Aug 2021 20:07:03,861 INFO : Inserting Coagulation factor VII
16 Aug 2021 20:07:03,872 INFO : 22% Done
16 Aug 2021 20:07:04,032 INFO : Inserting Coagulation factor VIII
16 Aug 2021 20:07:04,199 INFO : Inserting Coagulation factor X
16 Aug 2021 20:07:04,359 INFO : Inserting Coagulation factor XI
16 Aug 2021 20:07:04,521 INFO : Inserting Coagulation factor XII
16 Aug 2021 20:07:04,685 INFO : Inserting Coagulation factor XIII A chain
16 Aug 2021 20:07:04,693 INFO : 23% Done
16 Aug 2021 20:07:04,846 INFO : Inserting Coagulation factor XIII B chain
16 Aug 2021 20:07:05,013 INFO : Inserting Collagen alpha-1(I) chain
16 Aug 2021 20:07:05,202 INFO : Inserting Collagen alpha-1(III) chain
16 Aug 2021 20:07:05,214 INFO : 24% Done
16 Aug 2021 20:07:05,384 INFO : Inserting Collagen alpha-1(XVIII) chain
16 Aug 2021 20:07:05,545 INFO : Inserting Collagen alpha-2(I) chain
16 Aug 2021 20:07:05,721 INFO : Inserting Complement C1q subcomponent subunit A
16 Aug 2021 20:07:05,730 INFO : 25% Done
16 Aug 2021 20:07:05,894 INFO : Inserting Complement C1q subcomponent subunit B
16 Aug 2021 20:07:06,079 INFO : Inserting Complement C1q subcomponent subunit C
16 Aug 2021 20:07:06,090 INFO : 26% Done
16 Aug 2021 20:07:06,274 INFO : Inserting Complement C1r subcomponent
16 Aug 2021 20:07:06,466 INFO : Inserting Complement C1r subcomponent-like protein
16 Aug 2021 20:07:06,651 INFO : Inserting Complement C1s subcomponent
16 Aug 2021 20:07:06,818 INFO : Inserting Complement C2
16 Aug 2021 20:07:06,977 INFO : Inserting Complement C3
16 Aug 2021 20:07:07,136 INFO : Inserting Complement C5
16 Aug 2021 20:07:07,192 INFO : 27% Done
16 Aug 2021 20:07:07,362 INFO : Inserting Complement component C6
16 Aug 2021 20:07:07,535 INFO : Inserting Complement component C7
16 Aug 2021 20:07:07,729 INFO : Inserting Complement component C8 alpha chain
16 Aug 2021 20:07:07,741 INFO : 28% Done
16 Aug 2021 20:07:07,928 INFO : Inserting Complement component C8 beta chain
16 Aug 2021 20:07:08,090 INFO : Inserting Complement component C9
16 Aug 2021 20:07:08,101 INFO : 29% Done
16 Aug 2021 20:07:08,259 INFO : Inserting Complement factor B
16 Aug 2021 20:07:08,431 INFO : Inserting Complement factor D
16 Aug 2021 20:07:08,592 INFO : Inserting Complement factor H
16 Aug 2021 20:07:08,602 INFO : 30% Done
16 Aug 2021 20:07:08,762 INFO : Imported 100 peptide groups.
16 Aug 2021 20:07:08,762 INFO : Inserting Complement factor I
16 Aug 2021 20:07:08,927 INFO : Inserting Complement_C4
16 Aug 2021 20:07:09,324 INFO : Inserting Corticosteroid-binding globulin
16 Aug 2021 20:07:09,487 INFO : Inserting C-reactive protein
16 Aug 2021 20:07:09,654 INFO : Inserting Creatine kinase B-type
16 Aug 2021 20:07:09,664 INFO : 31% Done
16 Aug 2021 20:07:09,833 INFO : Inserting Creatine kinase M-type
16 Aug 2021 20:07:10,029 INFO : Inserting Cystatin-C
16 Aug 2021 20:07:10,037 INFO : 32% Done
16 Aug 2021 20:07:10,209 INFO : Inserting Desmoplakin
16 Aug 2021 20:07:10,405 INFO : Inserting Dickkopf-related protein 1 and 2
16 Aug 2021 20:07:10,588 INFO : Inserting Di-N-acetylchitobiase
16 Aug 2021 20:07:10,598 INFO : 33% Done
16 Aug 2021 20:07:10,793 INFO : Inserting Elastin
16 Aug 2021 20:07:10,981 INFO : Inserting Endothelial lipase
16 Aug 2021 20:07:11,189 INFO : Inserting Endothelial protein C receptor
16 Aug 2021 20:07:11,200 INFO : 34% Done
16 Aug 2021 20:07:11,388 INFO : Inserting Epidermal growth factor receptor
16 Aug 2021 20:07:11,589 INFO : Inserting E-selectin
16 Aug 2021 20:07:11,808 INFO : Inserting Extracellular matrix protein 1
16 Aug 2021 20:07:11,972 INFO : Inserting Fatty acid-binding protein heart
16 Aug 2021 20:07:12,168 INFO : Inserting Ferritin heavy chain
16 Aug 2021 20:07:12,177 INFO : 35% Done
16 Aug 2021 20:07:12,365 INFO : Inserting Ferritin light chain
16 Aug 2021 20:07:12,556 INFO : Inserting Fetuin-B
16 Aug 2021 20:07:12,750 INFO : Inserting Fibrinogen alpha chain
16 Aug 2021 20:07:12,760 INFO : 36% Done
16 Aug 2021 20:07:12,947 INFO : Inserting Fibrinogen beta chain
16 Aug 2021 20:07:13,134 INFO : Inserting Fibrinogen gamma chain
16 Aug 2021 20:07:13,337 INFO : Inserting Fibronectin
16 Aug 2021 20:07:13,348 INFO : 37% Done
16 Aug 2021 20:07:13,538 INFO : Inserting Fibulin-1
16 Aug 2021 20:07:13,702 INFO : Inserting Ficolin-2
16 Aug 2021 20:07:13,888 INFO : Inserting Ficolin-3
16 Aug 2021 20:07:13,900 INFO : 38% Done
16 Aug 2021 20:07:14,067 INFO : Inserting Follistatin-related protein 1
16 Aug 2021 20:07:14,259 INFO : Inserting Fructose-bisphosphate aldolase B
16 Aug 2021 20:07:14,456 INFO : Inserting Galectin-3
16 Aug 2021 20:07:14,651 INFO : Inserting Galectin-3-binding protein
16 Aug 2021 20:07:14,851 INFO : Inserting Gamma-enolase
16 Aug 2021 20:07:14,862 INFO : 39% Done
16 Aug 2021 20:07:15,083 INFO : Inserting Gelsolin
16 Aug 2021 20:07:15,271 INFO : Inserting Glial fibrillary acidic protein
16 Aug 2021 20:07:15,476 INFO : Inserting Glutamate receptor ionotropic NMDA 2A
16 Aug 2021 20:07:15,488 INFO : 40% Done
16 Aug 2021 20:07:15,682 INFO : Inserting Glutamate receptor ionotropic NMDA 2B
16 Aug 2021 20:07:15,873 INFO : Inserting Glutathione peroxidase 3
16 Aug 2021 20:07:16,091 INFO : Inserting Glutathione S-transferase P
16 Aug 2021 20:07:16,100 INFO : 41% Done
16 Aug 2021 20:07:16,265 INFO : Inserting Haptoglobin
16 Aug 2021 20:07:16,443 INFO : Inserting Heat shock protein beta-1
16 Aug 2021 20:07:16,452 INFO : 42% Done
16 Aug 2021 20:07:16,632 INFO : Inserting Hemoglobin subunit alpha
16 Aug 2021 20:07:16,828 INFO : Inserting Hemopexin
16 Aug 2021 20:07:17,046 INFO : Inserting Heparin cofactor 2
16 Aug 2021 20:07:17,281 INFO : Inserting Hepatocyte growth factor-like protein
16 Aug 2021 20:07:17,474 INFO : Inserting Histidine-rich glycoprotein
16 Aug 2021 20:07:17,693 INFO : Inserting Hornerin
16 Aug 2021 20:07:17,703 INFO : 43% Done
16 Aug 2021 20:07:17,921 INFO : Inserting Hyaluronan-binding protein 2
16 Aug 2021 20:07:18,121 INFO : Inserting Ig gamma-1 chain C region
16 Aug 2021 20:07:18,316 INFO : Inserting Ig mu chain C region
16 Aug 2021 20:07:18,326 INFO : 44% Done
16 Aug 2021 20:07:18,505 INFO : Inserting Ig mu heavy chain disease protein and Ig mu chain C
16 Aug 2021 20:07:18,690 INFO : Inserting IgGFc-binding protein
16 Aug 2021 20:07:18,700 INFO : 45% Done
16 Aug 2021 20:07:18,894 INFO : Inserting Immunoglobulin kappa variable 4-1
16 Aug 2021 20:07:19,096 INFO : Inserting Insulin-like growth factor I
16 Aug 2021 20:07:19,300 INFO : Inserting Insulin-like growth factor-binding protein 1
16 Aug 2021 20:07:19,311 INFO : 46% Done
16 Aug 2021 20:07:19,505 INFO : Inserting Insulin-like growth factor-binding protein 2
16 Aug 2021 20:07:19,689 INFO : Inserting Insulin-like growth factor-binding protein 3
16 Aug 2021 20:07:19,887 INFO : Inserting Insulin-like growth factor-binding protein complex acid labile subunit
16 Aug 2021 20:07:20,272 INFO : Inserting Inter-alpha-trypsin inhibitor heavy chain H1
16 Aug 2021 20:07:20,484 INFO : Inserting Inter-alpha-trypsin inhibitor heavy chain H2
16 Aug 2021 20:07:20,496 INFO : 47% Done
16 Aug 2021 20:07:20,673 INFO : Inserting Inter-alpha-trypsin inhibitor heavy chain H4
16 Aug 2021 20:07:20,858 INFO : Inserting Intercellular adhesion molecule 1
16 Aug 2021 20:07:20,870 INFO : 48% Done
16 Aug 2021 20:07:21,037 INFO : Inserting Interleukin-10
16 Aug 2021 20:07:21,215 INFO : Inserting Interleukin-6
16 Aug 2021 20:07:21,393 INFO : Inserting Interstitial collagenase
16 Aug 2021 20:07:21,402 INFO : 49% Done
16 Aug 2021 20:07:21,564 INFO : Inserting Kallistatin
16 Aug 2021 20:07:21,731 INFO : Inserting Keratin type I cytoskeletal 10
16 Aug 2021 20:07:21,904 INFO : Inserting Keratin type I cytoskeletal 9
16 Aug 2021 20:07:21,915 INFO : 50% Done
16 Aug 2021 20:07:22,081 INFO : Inserting Keratin-type II cytoskeletal 2 epidermal
16 Aug 2021 20:07:22,255 INFO : Inserting Kininogen-1
16 Aug 2021 20:07:22,419 INFO : Inserting Lactotransferrin
16 Aug 2021 20:07:22,591 INFO : Inserting Leucine-rich alpha-2-glycoprotein
16 Aug 2021 20:07:22,759 INFO : Inserting Lipopolysaccharide-binding protein
16 Aug 2021 20:07:22,771 INFO : 51% Done
16 Aug 2021 20:07:22,934 INFO : Inserting L-selectin
16 Aug 2021 20:07:23,103 INFO : Inserting Lumican
16 Aug 2021 20:07:23,304 INFO : Inserting Lysozyme C
16 Aug 2021 20:07:23,314 INFO : 52% Done
16 Aug 2021 20:07:23,482 INFO : Inserting Mannan-binding lectin serine protease 1
16 Aug 2021 20:07:23,649 INFO : Inserting Mannan-binding lectin serine protease 2A
16 Aug 2021 20:07:23,849 INFO : Inserting Mannose-binding protein C
16 Aug 2021 20:07:23,858 INFO : 53% Done
16 Aug 2021 20:07:24,043 INFO : Inserting Matrix Gla protein
16 Aug 2021 20:07:24,248 INFO : Inserting Matrix metalloproteinase-9
16 Aug 2021 20:07:24,416 INFO : Inserting Melanotransferrin
16 Aug 2021 20:07:24,426 INFO : 54% Done
16 Aug 2021 20:07:24,591 INFO : Inserting Metalloproteinase inhibitor 1
16 Aug 2021 20:07:24,774 INFO : Inserting Metalloproteinase inhibitor 2
16 Aug 2021 20:07:24,958 INFO : Inserting Metalloproteinase inhibitor 4
16 Aug 2021 20:07:25,148 INFO : Inserting Microtubule-associated protein tau
16 Aug 2021 20:07:25,353 INFO : Inserting Mucin-16
16 Aug 2021 20:07:25,363 INFO : 55% Done
16 Aug 2021 20:07:25,531 INFO : Inserting Myelin basic protein
16 Aug 2021 20:07:25,708 INFO : Inserting Myeloblastin
16 Aug 2021 20:07:25,871 INFO : Inserting Myeloperoxidase
16 Aug 2021 20:07:25,880 INFO : 56% Done
16 Aug 2021 20:07:26,040 INFO : Inserting N(G),N(G)-dimethylarginine dimethylaminohydrolase 1
16 Aug 2021 20:07:26,231 INFO : Inserting N-acetylmuramoyl-L-alanine amidase
16 Aug 2021 20:07:26,415 INFO : Inserting Natriuretic peptides B
16 Aug 2021 20:07:26,423 INFO : 57% Done
16 Aug 2021 20:07:26,629 INFO : Inserting Neuropilin-2
16 Aug 2021 20:07:26,900 INFO : Inserting Neutrophil gelatinase-associated lipocalin
16 Aug 2021 20:07:26,909 INFO : 58% Done
16 Aug 2021 20:07:27,127 INFO : Inserting Nucleoside diphosphate kinase A, B
16 Aug 2021 20:07:27,352 INFO : Inserting Occludin
16 Aug 2021 20:07:27,559 INFO : Inserting Osteopontin
16 Aug 2021 20:07:27,793 INFO : Inserting Oxidized low-density lipoprotein receptor 1
16 Aug 2021 20:07:28,016 INFO : Inserting Pappalysin-1
16 Aug 2021 20:07:28,229 INFO : Inserting Peroxiredoxin-1
16 Aug 2021 20:07:28,241 INFO : 59% Done
16 Aug 2021 20:07:28,415 INFO : Imported 200 peptide groups.
16 Aug 2021 20:07:28,415 INFO : Inserting Peroxiredoxin-2
16 Aug 2021 20:07:28,590 INFO : Inserting Phosphatidylcholine-sterol acyltransferase
16 Aug 2021 20:07:28,797 INFO : Inserting Phosphatidylinositol-glycan-specific phospholipase D
16 Aug 2021 20:07:28,806 INFO : 60% Done
16 Aug 2021 20:07:28,962 INFO : Inserting Phospholipid transfer protein
16 Aug 2021 20:07:29,133 INFO : Inserting Pigment epithelium-derived factor
16 Aug 2021 20:07:29,141 INFO : 61% Done
16 Aug 2021 20:07:29,300 INFO : Inserting Plasma protease C1 inhibitor
16 Aug 2021 20:07:29,469 INFO : Inserting Plasma serine protease inhibitor
16 Aug 2021 20:07:29,662 INFO : Inserting Plasminogen activator inhibitor 1
16 Aug 2021 20:07:29,673 INFO : 62% Done
16 Aug 2021 20:07:29,841 INFO : Inserting Plasminogen
16 Aug 2021 20:07:30,030 INFO : Inserting Plastin-2
16 Aug 2021 20:07:30,232 INFO : Inserting Platelet endothelial cell adhesion molecule
16 Aug 2021 20:07:30,433 INFO : Inserting Platelet glycoprotein VI
16 Aug 2021 20:07:30,643 INFO : Inserting Platelet-activating factor acetylhydrolase
16 Aug 2021 20:07:30,848 INFO : Inserting Pregnancy zone protein
16 Aug 2021 20:07:30,856 INFO : 63% Done
16 Aug 2021 20:07:31,053 INFO : Inserting Proenkephalin-A
16 Aug 2021 20:07:31,273 INFO : Inserting Prolactin
16 Aug 2021 20:07:31,281 INFO : 64% Done
16 Aug 2021 20:07:31,473 INFO : Inserting Protein AMBP
16 Aug 2021 20:07:31,680 INFO : Inserting Protein S100-A12
16 Aug 2021 20:07:31,902 INFO : Inserting Protein S100-A9
16 Aug 2021 20:07:31,914 INFO : 65% Done
16 Aug 2021 20:07:32,123 INFO : Inserting Protein S100-B
16 Aug 2021 20:07:32,339 INFO : Inserting Protein Z-dependent protease inhibitor
16 Aug 2021 20:07:32,546 INFO : Inserting Protein_deglycase_DJ-1
16 Aug 2021 20:07:32,557 INFO : 66% Done
16 Aug 2021 20:07:32,770 INFO : Inserting Proteoglycan 4
16 Aug 2021 20:07:32,992 INFO : Inserting Prothrombin
16 Aug 2021 20:07:33,199 INFO : Inserting P-selectin
16 Aug 2021 20:07:33,401 INFO : Inserting Ras GTPase-activating protein nGAP
16 Aug 2021 20:07:33,586 INFO : Inserting Resistin
16 Aug 2021 20:07:33,595 INFO : 67% Done
16 Aug 2021 20:07:33,793 INFO : Inserting Retinol-binding protein 4
16 Aug 2021 20:07:33,992 INFO : Inserting Serotransferrin
16 Aug 2021 20:07:34,168 INFO : Inserting Serum albumin
16 Aug 2021 20:07:34,177 INFO : 68% Done
16 Aug 2021 20:07:34,361 INFO : Inserting Serum amyloid A-1 and A-2 proteins
16 Aug 2021 20:07:34,529 INFO : Inserting Serum amyloid A-4 protein
16 Aug 2021 20:07:34,698 INFO : Inserting Serum amyloid P-component
16 Aug 2021 20:07:34,708 INFO : 69% Done
16 Aug 2021 20:07:34,915 INFO : Inserting Serum paraoxonase/arylesterase 1
16 Aug 2021 20:07:35,088 INFO : Inserting Serum paraoxonase/lactonase 3
16 Aug 2021 20:07:35,099 INFO : 70% Done
16 Aug 2021 20:07:35,262 INFO : Inserting Sex hormone-binding globulin
16 Aug 2021 20:07:35,442 INFO : Inserting SPARC
16 Aug 2021 20:07:35,611 INFO : Inserting Spermine oxidase
16 Aug 2021 20:07:35,787 INFO : Inserting Sterile alpha motif domain-containing protein 9-like
16 Aug 2021 20:07:35,966 INFO : Inserting Stromelysin-1
16 Aug 2021 20:07:36,146 INFO : Inserting Target of Nesh-SH3
16 Aug 2021 20:07:36,155 INFO : 71% Done
16 Aug 2021 20:07:36,323 INFO : Inserting TBC1 domain family member 10A
16 Aug 2021 20:07:36,502 INFO : Inserting Tenascin
16 Aug 2021 20:07:36,675 INFO : Inserting Tenascin-X
16 Aug 2021 20:07:36,684 INFO : 72% Done
16 Aug 2021 20:07:36,850 INFO : Inserting Tetranectin
16 Aug 2021 20:07:37,029 INFO : Inserting Thrombomodulin
16 Aug 2021 20:07:37,042 INFO : 73% Done
16 Aug 2021 20:07:37,218 INFO : Inserting Thrombospondin-1
16 Aug 2021 20:07:37,392 INFO : Inserting Thrombospondin-4
16 Aug 2021 20:07:37,561 INFO : Inserting Thyroglobulin
16 Aug 2021 20:07:37,572 INFO : 74% Done
16 Aug 2021 20:07:37,742 INFO : Inserting Thyroxine-binding globulin
16 Aug 2021 20:07:37,919 INFO : Inserting Tissue_factor_pathway_inhibitor
16 Aug 2021 20:07:38,099 INFO : Inserting Tissue-type plasminogen activator
16 Aug 2021 20:07:38,283 INFO : Inserting Transcription factor SOX-1
16 Aug 2021 20:07:38,473 INFO : Inserting Transferrin receptor protein 1
16 Aug 2021 20:07:38,645 INFO : Inserting Transthyretin
16 Aug 2021 20:07:38,653 INFO : 75% Done
16 Aug 2021 20:07:38,817 INFO : Inserting Tumor necrosis factor receptor superfamily member 1A
16 Aug 2021 20:07:39,023 INFO : 76% Done
16 Aug 2021 20:07:39,219 INFO : Inserting Tumor necrosis factor receptor superfamily member 1B
16 Aug 2021 20:07:39,429 INFO : Inserting Vascular cell adhesion protein 1
16 Aug 2021 20:07:39,627 INFO : Inserting Vascular endothelial growth factor B
16 Aug 2021 20:07:39,638 INFO : 77% Done
16 Aug 2021 20:07:39,839 INFO : Inserting Vascular endothelial growth factor D
16 Aug 2021 20:07:40,027 INFO : Inserting Vascular non-inflammatory molecule 3
16 Aug 2021 20:07:40,209 INFO : Inserting Vasorin
16 Aug 2021 20:07:40,217 INFO : 78% Done
16 Aug 2021 20:07:40,384 INFO : Inserting Vitamin D-binding protein
16 Aug 2021 20:07:40,559 INFO : Inserting Vitamin K-dependent protein C
16 Aug 2021 20:07:40,737 INFO : Inserting Vitamin K-dependent protein S
16 Aug 2021 20:07:40,913 INFO : Inserting Vitamin K-dependent protein Z
16 Aug 2021 20:07:41,093 INFO : 79% Done
16 Aug 2021 20:07:41,260 INFO : Inserting Vitronectin
16 Aug 2021 20:07:41,430 INFO : Inserting von Willebrand factor
16 Aug 2021 20:07:41,592 INFO : Inserting Xaa-Pro dipeptidase
16 Aug 2021 20:07:41,600 INFO : 80% Done
16 Aug 2021 20:07:41,758 INFO : Inserting Zinc-alpha-2-glycoprotein
16 Aug 2021 20:07:41,920 INFO : Done parsing Skyline document.
16 Aug 2021 20:07:41,929 INFO : No group comparisons found.
16 Aug 2021 20:07:41,929 INFO : Calculating calibration curves
16 Aug 2021 20:07:42,125 INFO : 81% Done
16 Aug 2021 20:07:42,523 INFO : 82% Done
16 Aug 2021 20:07:42,827 INFO : 83% Done
16 Aug 2021 20:07:43,220 INFO : 84% Done
16 Aug 2021 20:07:43,537 INFO : 85% Done
16 Aug 2021 20:07:43,832 INFO : 86% Done
16 Aug 2021 20:07:44,187 INFO : 87% Done
16 Aug 2021 20:07:44,526 INFO : 88% Done
16 Aug 2021 20:07:44,955 INFO : 89% Done
16 Aug 2021 20:07:45,243 INFO : 90% Done
16 Aug 2021 20:07:45,614 INFO : 91% Done
16 Aug 2021 20:07:45,919 INFO : 92% Done
16 Aug 2021 20:07:46,346 INFO : 93% Done
16 Aug 2021 20:07:46,630 INFO : 94% Done
16 Aug 2021 20:07:46,932 INFO : 95% Done
16 Aug 2021 20:07:47,240 INFO : 96% Done
16 Aug 2021 20:07:47,497 INFO : 97% Done
16 Aug 2021 20:07:47,814 INFO : 98% Done
16 Aug 2021 20:07:54,054 INFO : Done calculating calibration curves.
16 Aug 2021 20:07:54,055 INFO : Creating and populating temp tables for Proportion values
16 Aug 2021 20:07:54,736 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Aug 2021 20:08:04,545 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Aug 2021 20:08:05,830 INFO : Cleaning up temp tables
16 Aug 2021 20:08:06,049 INFO : Completed import of Skyline document from COVID patients_Human Plasma 270 panel upl_2021-08-09_21-50-57.sky.zip
16 Aug 2021 20:08:06,053 INFO : 100% Done
16 Aug 2021 20:08:06,067 INFO : Done importing xar
16 Aug 2021 20:08:06,069 INFO : Loading pages and webpart properties
16 Aug 2021 20:08:06,145 INFO : Done importing pages and webpart properties
16 Aug 2021 20:08:06,146 INFO :
16 Aug 2021 20:08:06,146 INFO : Experiment import completed successfully.
16 Aug 2021 20:08:06,146 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
16 Aug 2021 20:08:06,206 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
16 Aug 2021 20:08:06,206 INFO :
16 Aug 2021 20:08:06,207 INFO : Finishing up experiment copy.
16 Aug 2021 20:08:06,210 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
16 Aug 2021 20:08:06,212 INFO : Assigning a ProteomeXchange ID.
16 Aug 2021 20:08:06,331 INFO : Assigning a DOI.
16 Aug 2021 20:08:08,084 INFO : Assigned DOI: 10.6069/y3pc-xa49
16 Aug 2021 20:08:08,088 INFO : Updating access URL to point to the new copy of the data.
16 Aug 2021 20:08:08,094 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
16 Aug 2021 20:08:08,095 INFO : Removing copy permissions given to journal.
16 Aug 2021 20:08:08,107 INFO : Adding read permissions to all users that are folder admins in the source container.
16 Aug 2021 20:08:08,115 INFO : Setting the TargetedMS folder type to 'Experimental Data'
16 Aug 2021 20:08:08,127 INFO : Updating the 'Raw Data' tab configuration
16 Aug 2021 20:08:08,130 INFO : Updating dataFileUrls for run COVID patients_Human Plasma 270 panel upl_2021-08-09_21-50-57.sky.zip; targetedms run ID 118217
16 Aug 2021 20:08:08,130 INFO : Updating dataFileUrl...
16 Aug 2021 20:08:08,130 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/MRM%20Proteomics%20-%20COVID%20270%20panel_9944e228-e135-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_20-06-17/export/xar/experiments_and_runs.xar.exploded/Run115362/COVID%20patients_Human%20Plasma%20270%20panel%20upl_2021-08-09_21-50-57/COVID%20patients_Human%20Plasma%20270%20panel%20upl.skyd
16 Aug 2021 20:08:08,130 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/MRM%20Proteomics%20-%20COVID%20270%20panel/@files/COVID%20patients_Human%20Plasma%20270%20panel%20upl_2021-08-09_21-50-57/COVID%20patients_Human%20Plasma%20270%20panel%20upl.skyd
16 Aug 2021 20:08:08,132 INFO : Updating dataFileUrl...
16 Aug 2021 20:08:08,132 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/MRM%20Proteomics%20-%20COVID%20270%20panel_9944e228-e135-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_20-06-17/export/xar/experiments_and_runs.xar.exploded/Run115362/COVID%20patients_Human%20Plasma%20270%20panel%20upl_2021-08-09_21-50-57.sky.zip
16 Aug 2021 20:08:08,132 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/MRM%20Proteomics%20-%20COVID%20270%20panel/@files/COVID%20patients_Human%20Plasma%20270%20panel%20upl_2021-08-09_21-50-57.sky.zip
16 Aug 2021 20:08:08,134 INFO : Creating a reviewer account.
16 Aug 2021 20:08:08,345 INFO : Created reviewer with email: User panorama+reviewer56@proteinms.net
16 Aug 2021 20:08:08,353 INFO : Hiding the Data Pipeline tab.
16 Aug 2021 20:08:08,421 INFO : Emailing submitter.
16 Aug 2021 20:08:08,542 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'