Copying experiment: Plasma proteomic analysis to identify potential biomarkers of histologic chorioamnionitis in women with preterm premature rupture of membranes: /Panorama Public/2021/Seoul National University Proteomics Core

Copying experiment: Plasma proteomic analysis to identify potential biomarkers of histologic chorioamnionitis in women with preterm premature rupture of membranes

Seoul National University Proteomics Core - PPROM

Job Status

Created:

2021-08-13 16:41:43

Modified:

2021-08-13 16:42:08

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: Plasma proteomic analysis to identify potential biomarkers of histologic chorioamnionitis in women with preterm premature rupture of membranes

File Path:

/data/labkey/files/Panorama Public/2021/Seoul National University Proteomics Core - PPROM/@files/Experiment_1323.log

Files:

Experiment_1323.log

Join job:

Status	Description

Split jobs:

Status	Description

Completed Runs:

MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip
Response_curve_0520_2021-08-13_19-12-34.sky.zip

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Log File

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13 Aug 2021 16:41:43,626 INFO : Copying experiment "Plasma proteomic analysis to identify potential biomarkers of histologic chorioamnionitis in women with preterm premature rupture of membranes" from folder /Seoul National University - Proteomics Core/PPROM_Seoul National University Bundang Hospital_2021 to /Panorama Public/2021/Seoul National University Proteomics Core - PPROM

13 Aug 2021 16:41:43,627 INFO : =======================================

13 Aug 2021 16:41:43,744 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

13 Aug 2021 16:41:43,744 INFO :

13 Aug 2021 16:41:43,745 INFO : Exporting experiment.

13 Aug 2021 16:41:49,900 INFO :

13 Aug 2021 16:41:49,900 INFO : Experiment export completed successfully.

13 Aug 2021 16:41:49,900 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

13 Aug 2021 16:41:49,956 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

13 Aug 2021 16:41:49,956 INFO :

13 Aug 2021 16:41:49,956 INFO : Importing experiment.

13 Aug 2021 16:41:49,961 INFO : Loading folder properties (folder type, settings and active modules)

13 Aug 2021 16:41:50,053 INFO : Done importing folder properties (folder type, settings and active modules)

13 Aug 2021 16:41:50,057 INFO : Loading etl definitions

13 Aug 2021 16:41:50,060 INFO : Loading wikis

13 Aug 2021 16:41:50,061 INFO : 0 wikis imported

13 Aug 2021 16:41:50,061 INFO : Done importing wikis

13 Aug 2021 16:41:50,061 INFO : Starting to copy files

13 Aug 2021 16:41:51,975 INFO : Copied 20 files

13 Aug 2021 16:41:51,975 INFO : Ensuring exp.data rows exist for imported files

13 Aug 2021 16:41:52,304 INFO : Starting Sample Type and Data Class import

13 Aug 2021 16:41:52,304 INFO : No types XAR file to process.

13 Aug 2021 16:41:52,304 INFO : Finished importing Sample Types and Data Classes

13 Aug 2021 16:41:52,306 INFO : Loading xar

13 Aug 2021 16:41:52,740 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip'

13 Aug 2021 16:41:52,742 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip.Core'

13 Aug 2021 16:41:52,744 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip.Output'

13 Aug 2021 16:41:52,744 DEBUG: Protocol import complete

13 Aug 2021 16:41:52,745 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8983:PPROM'

13 Aug 2021 16:41:52,745 DEBUG: Experiment/Run group import complete

13 Aug 2021 16:41:52,754 DEBUG: Protocol action set import complete

13 Aug 2021 16:41:52,764 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip'

13 Aug 2021 16:41:52,782 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8983:66b9f10a-de4c-1039-a2b1-fea6ddf522ee'

13 Aug 2021 16:41:52,786 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8983:66b9f0e9-de4c-1039-a2b1-fea6ddf522ee'

13 Aug 2021 16:41:52,786 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip.Core'

13 Aug 2021 16:41:52,790 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip.Output'

13 Aug 2021 16:41:52,792 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8983:66b9f261-de4c-1039-a2b1-fea6ddf522ee'

13 Aug 2021 16:41:52,799 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip'

13 Aug 2021 16:41:52,803 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8983:66ba0327-de4c-1039-a2b1-fea6ddf522ee'

13 Aug 2021 16:41:52,807 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8983:66ba030a-de4c-1039-a2b1-fea6ddf522ee'

13 Aug 2021 16:41:52,807 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip.Core'

13 Aug 2021 16:41:52,809 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8983:TargetedMS.ImportSkyZip.Output'

13 Aug 2021 16:41:52,810 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8983:66ba03f0-de4c-1039-a2b1-fea6ddf522ee'

13 Aug 2021 16:41:52,812 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115566/MRM_final_verification_0530_2021-08-13_19-08-32/MRM_final_verification_0530.skyd into the system

13 Aug 2021 16:41:52,813 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115566/MRM_final_verification_0530_2021-08-13_19-08-32/MRM_final_verification_0530.skyd into the system

13 Aug 2021 16:41:52,813 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115566/MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip into the system

13 Aug 2021 16:41:52,814 INFO : Starting import from MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip

13 Aug 2021 16:41:52,818 INFO : Starting to import Skyline document from MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip

13 Aug 2021 16:41:52,825 INFO : Expanding MRM_final_verification_0530.skyd

13 Aug 2021 16:41:52,974 INFO : Expanding MRM_final_verification_0530.sky.view

13 Aug 2021 16:41:52,975 INFO : Expanding MRM_final_verification_0530.sky

13 Aug 2021 16:41:53,023 INFO : 1% Done

13 Aug 2021 16:41:53,252 DEBUG: Starting to load chromatogram headers

13 Aug 2021 16:41:53,264 DEBUG: Done loading chromatogram headers

13 Aug 2021 16:41:53,370 INFO : Inserting sp|P02741|CRP_HUMAN

13 Aug 2021 16:41:53,391 INFO : 2% Done

13 Aug 2021 16:41:53,559 INFO : 4% Done

13 Aug 2021 16:41:53,709 INFO : 6% Done

13 Aug 2021 16:41:53,854 INFO : 8% Done

13 Aug 2021 16:41:53,990 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:41:53,993 INFO : Inserting sp|Q9NQ79|CRAC1_HUMAN

13 Aug 2021 16:41:54,004 INFO : 10% Done

13 Aug 2021 16:41:54,125 INFO : 11% Done

13 Aug 2021 16:41:54,266 INFO : 13% Done

13 Aug 2021 16:41:54,407 INFO : 15% Done

13 Aug 2021 16:41:54,535 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:41:54,538 INFO : Inserting sp|O14907|TX1B3_HUMAN

13 Aug 2021 16:41:54,548 INFO : 17% Done

13 Aug 2021 16:41:54,697 INFO : 19% Done

13 Aug 2021 16:41:54,836 INFO : 21% Done

13 Aug 2021 16:41:54,990 DEBUG: Total peptides inserted: 3

13 Aug 2021 16:41:54,993 INFO : Inserting sp|P35542|SAA4_HUMAN

13 Aug 2021 16:41:55,003 INFO : 23% Done

13 Aug 2021 16:41:55,148 INFO : 25% Done

13 Aug 2021 16:41:55,301 INFO : 26% Done

13 Aug 2021 16:41:55,453 INFO : 28% Done

13 Aug 2021 16:41:55,637 INFO : 32% Done

13 Aug 2021 16:41:55,907 DEBUG: Total peptides inserted: 5

13 Aug 2021 16:41:55,910 INFO : Inserting sp|Q6UWP8|SBSN_HUMAN

13 Aug 2021 16:41:55,921 INFO : 34% Done

13 Aug 2021 16:41:56,074 INFO : 36% Done

13 Aug 2021 16:41:56,241 INFO : 38% Done

13 Aug 2021 16:41:56,369 DEBUG: Total peptides inserted: 3

13 Aug 2021 16:41:56,372 INFO : Inserting sp|P0C0L4|CO4A_HUMAN

13 Aug 2021 16:41:56,388 INFO : 40% Done

13 Aug 2021 16:41:56,534 INFO : 42% Done

13 Aug 2021 16:41:56,704 INFO : 44% Done

13 Aug 2021 16:41:56,847 INFO : 46% Done

13 Aug 2021 16:41:57,008 INFO : 48% Done

13 Aug 2021 16:41:57,144 DEBUG: Total peptides inserted: 5

13 Aug 2021 16:41:57,148 INFO : Inserting sp|P04275|VWF_HUMAN

13 Aug 2021 16:41:57,157 INFO : 50% Done

13 Aug 2021 16:41:57,299 INFO : 52% Done

13 Aug 2021 16:41:57,434 INFO : 54% Done

13 Aug 2021 16:41:57,573 INFO : 56% Done

13 Aug 2021 16:41:57,711 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:41:57,713 INFO : Inserting sp|P02753|RET4_HUMAN

13 Aug 2021 16:41:57,726 INFO : 58% Done

13 Aug 2021 16:41:57,888 INFO : 60% Done

13 Aug 2021 16:41:58,026 INFO : 62% Done

13 Aug 2021 16:41:58,164 INFO : 64% Done

13 Aug 2021 16:41:58,292 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:41:58,295 INFO : Inserting sp|P06276|CHLE_HUMAN

13 Aug 2021 16:41:58,306 INFO : 66% Done

13 Aug 2021 16:41:58,449 INFO : 68% Done

13 Aug 2021 16:41:58,585 INFO : 69% Done

13 Aug 2021 16:41:58,728 INFO : 71% Done

13 Aug 2021 16:41:58,862 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:41:58,864 INFO : Inserting sp|P43251|BTD_HUMAN

13 Aug 2021 16:41:58,874 INFO : 73% Done

13 Aug 2021 16:41:59,019 INFO : 75% Done

13 Aug 2021 16:41:59,180 INFO : 78% Done

13 Aug 2021 16:41:59,420 INFO : 80% Done

13 Aug 2021 16:41:59,557 INFO : 82% Done

13 Aug 2021 16:41:59,691 DEBUG: Total peptides inserted: 5

13 Aug 2021 16:41:59,693 INFO : Inserting sp|P26927|HGFL_HUMAN

13 Aug 2021 16:41:59,704 INFO : 84% Done

13 Aug 2021 16:41:59,864 INFO : 86% Done

13 Aug 2021 16:41:59,979 INFO : 88% Done

13 Aug 2021 16:42:00,120 INFO : 90% Done

13 Aug 2021 16:42:00,248 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:00,250 INFO : Inserting sp|P22352|GPX3_HUMAN

13 Aug 2021 16:42:00,260 INFO : 91% Done

13 Aug 2021 16:42:00,407 INFO : 94% Done

13 Aug 2021 16:42:00,580 INFO : 96% Done

13 Aug 2021 16:42:00,723 INFO : 98% Done

13 Aug 2021 16:42:00,877 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:00,878 INFO : Done parsing Skyline document.

13 Aug 2021 16:42:00,879 INFO : Creating and populating temp tables for Proportion values

13 Aug 2021 16:42:00,940 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Aug 2021 16:42:01,463 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Aug 2021 16:42:01,576 INFO : Cleaning up temp tables

13 Aug 2021 16:42:01,811 INFO : Completed import of Skyline document from MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip

13 Aug 2021 16:42:01,814 INFO : 100% Done

13 Aug 2021 16:42:01,821 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115566/MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip into the system

13 Aug 2021 16:42:01,821 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115567/Response_curve_0520_2021-08-13_19-12-34/Response_curve_0520.skyd into the system

13 Aug 2021 16:42:01,822 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115567/Response_curve_0520_2021-08-13_19-12-34/Response_curve_0520.skyd into the system

13 Aug 2021 16:42:01,822 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115567/Response_curve_0520_2021-08-13_19-12-34.sky.zip into the system

13 Aug 2021 16:42:01,823 INFO : Starting import from Response_curve_0520_2021-08-13_19-12-34.sky.zip

13 Aug 2021 16:42:01,825 INFO : Starting to import Skyline document from Response_curve_0520_2021-08-13_19-12-34.sky.zip

13 Aug 2021 16:42:01,829 INFO : Expanding Response_curve_0520.skyd

13 Aug 2021 16:42:01,926 INFO : Expanding Response_curve_0520.sky.view

13 Aug 2021 16:42:01,926 INFO : Expanding Response_curve_0520.sky

13 Aug 2021 16:42:01,948 INFO : 1% Done

13 Aug 2021 16:42:02,086 DEBUG: Starting to load chromatogram headers

13 Aug 2021 16:42:02,092 DEBUG: Done loading chromatogram headers

13 Aug 2021 16:42:02,165 INFO : Inserting sp|P02741|CRP_HUMAN

13 Aug 2021 16:42:02,171 INFO : 2% Done

13 Aug 2021 16:42:02,230 INFO : 4% Done

13 Aug 2021 16:42:02,288 INFO : 6% Done

13 Aug 2021 16:42:02,343 INFO : 7% Done

13 Aug 2021 16:42:02,396 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:02,398 INFO : Inserting sp|Q9NQ79|CRAC1_HUMAN

13 Aug 2021 16:42:02,403 INFO : 9% Done

13 Aug 2021 16:42:02,463 INFO : 11% Done

13 Aug 2021 16:42:02,531 INFO : 14% Done

13 Aug 2021 16:42:02,638 INFO : 16% Done

13 Aug 2021 16:42:02,701 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:02,703 INFO : Inserting sp|O14907|TX1B3_HUMAN

13 Aug 2021 16:42:02,709 INFO : 18% Done

13 Aug 2021 16:42:02,768 INFO : 20% Done

13 Aug 2021 16:42:02,825 INFO : 22% Done

13 Aug 2021 16:42:02,886 DEBUG: Total peptides inserted: 3

13 Aug 2021 16:42:02,889 INFO : Inserting sp|P35542|SAA4_HUMAN

13 Aug 2021 16:42:02,893 INFO : 23% Done

13 Aug 2021 16:42:02,951 INFO : 25% Done

13 Aug 2021 16:42:03,022 INFO : 26% Done

13 Aug 2021 16:42:03,082 INFO : 28% Done

13 Aug 2021 16:42:03,150 INFO : 31% Done

13 Aug 2021 16:42:03,239 DEBUG: Total peptides inserted: 5

13 Aug 2021 16:42:03,241 INFO : Inserting sp|Q6UWP8|SBSN_HUMAN

13 Aug 2021 16:42:03,246 INFO : 32% Done

13 Aug 2021 16:42:03,299 INFO : 34% Done

13 Aug 2021 16:42:03,352 INFO : 36% Done

13 Aug 2021 16:42:03,401 DEBUG: Total peptides inserted: 3

13 Aug 2021 16:42:03,403 INFO : Inserting sp|P0C0L4|CO4A_HUMAN

13 Aug 2021 16:42:03,408 INFO : 37% Done

13 Aug 2021 16:42:03,461 INFO : 39% Done

13 Aug 2021 16:42:03,523 INFO : 41% Done

13 Aug 2021 16:42:03,576 INFO : 43% Done

13 Aug 2021 16:42:03,634 INFO : 44% Done

13 Aug 2021 16:42:03,682 DEBUG: Total peptides inserted: 5

13 Aug 2021 16:42:03,684 INFO : Inserting sp|P04275|VWF_HUMAN

13 Aug 2021 16:42:03,689 INFO : 46% Done

13 Aug 2021 16:42:03,744 INFO : 48% Done

13 Aug 2021 16:42:03,803 INFO : 51% Done

13 Aug 2021 16:42:03,905 INFO : 54% Done

13 Aug 2021 16:42:03,998 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:04,001 INFO : Inserting sp|P02753|RET4_HUMAN

13 Aug 2021 16:42:04,007 INFO : 56% Done

13 Aug 2021 16:42:04,068 INFO : 58% Done

13 Aug 2021 16:42:04,122 INFO : 59% Done

13 Aug 2021 16:42:04,181 INFO : 61% Done

13 Aug 2021 16:42:04,233 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:04,235 INFO : Inserting sp|P06276|CHLE_HUMAN

13 Aug 2021 16:42:04,240 INFO : 63% Done

13 Aug 2021 16:42:04,299 INFO : 64% Done

13 Aug 2021 16:42:04,366 INFO : 66% Done

13 Aug 2021 16:42:04,427 INFO : 67% Done

13 Aug 2021 16:42:04,485 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:04,487 INFO : Inserting sp|P43251|BTD_HUMAN

13 Aug 2021 16:42:04,492 INFO : 69% Done

13 Aug 2021 16:42:04,559 INFO : 73% Done

13 Aug 2021 16:42:04,680 INFO : 75% Done

13 Aug 2021 16:42:04,783 INFO : 79% Done

13 Aug 2021 16:42:04,899 INFO : 82% Done

13 Aug 2021 16:42:05,002 DEBUG: Total peptides inserted: 5

13 Aug 2021 16:42:05,004 INFO : Inserting sp|P26927|HGFL_HUMAN

13 Aug 2021 16:42:05,015 INFO : 86% Done

13 Aug 2021 16:42:05,146 INFO : 89% Done

13 Aug 2021 16:42:05,248 INFO : 91% Done

13 Aug 2021 16:42:05,300 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:05,303 INFO : Inserting sp|P22352|GPX3_HUMAN

13 Aug 2021 16:42:05,308 INFO : 93% Done

13 Aug 2021 16:42:05,365 INFO : 95% Done

13 Aug 2021 16:42:05,430 INFO : 96% Done

13 Aug 2021 16:42:05,485 INFO : 98% Done

13 Aug 2021 16:42:05,544 DEBUG: Total peptides inserted: 4

13 Aug 2021 16:42:05,544 INFO : Done parsing Skyline document.

13 Aug 2021 16:42:05,545 INFO : Creating and populating temp tables for Proportion values

13 Aug 2021 16:42:05,577 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Aug 2021 16:42:05,763 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Aug 2021 16:42:05,812 INFO : Cleaning up temp tables

13 Aug 2021 16:42:06,031 INFO : Completed import of Skyline document from Response_curve_0520_2021-08-13_19-12-34.sky.zip

13 Aug 2021 16:42:06,040 INFO : 100% Done

13 Aug 2021 16:42:06,044 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115567/Response_curve_0520_2021-08-13_19-12-34.sky.zip into the system

13 Aug 2021 16:42:06,053 INFO : Done importing xar

13 Aug 2021 16:42:06,056 INFO : Loading pages and webpart properties

13 Aug 2021 16:42:06,124 INFO : Done importing pages and webpart properties

13 Aug 2021 16:42:06,124 INFO :

13 Aug 2021 16:42:06,124 INFO : Experiment import completed successfully.

13 Aug 2021 16:42:06,124 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

13 Aug 2021 16:42:06,172 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

13 Aug 2021 16:42:06,172 INFO :

13 Aug 2021 16:42:06,172 INFO : Finishing up experiment copy.

13 Aug 2021 16:42:06,174 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

13 Aug 2021 16:42:06,176 INFO : Assigning a DOI.

13 Aug 2021 16:42:07,920 INFO : Assigned DOI: 10.6069/rje1-xf11

13 Aug 2021 16:42:07,924 INFO : Updating access URL to point to the new copy of the data.

13 Aug 2021 16:42:07,929 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

13 Aug 2021 16:42:07,930 INFO : Removing copy permissions given to journal.

13 Aug 2021 16:42:07,941 INFO : Adding read permissions to all users that are folder admins in the source container.

13 Aug 2021 16:42:07,949 INFO : Setting the TargetedMS folder type to 'Experimental Data'

13 Aug 2021 16:42:07,952 INFO : Updating the 'Raw Data' tab configuration

13 Aug 2021 16:42:07,960 INFO : Updating dataFileUrls for run MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip; targetedms run ID 118116

13 Aug 2021 16:42:07,960 INFO : Updating dataFileUrl...

13 Aug 2021 16:42:07,961 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115566/MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip

13 Aug 2021 16:42:07,961 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM/@files/MRM_final_verification_0530_2021-08-13_19-08-32.sky.zip

13 Aug 2021 16:42:07,963 INFO : Updating dataFileUrl...

13 Aug 2021 16:42:07,963 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115566/MRM_final_verification_0530_2021-08-13_19-08-32/MRM_final_verification_0530.skyd

13 Aug 2021 16:42:07,963 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM/@files/MRM_final_verification_0530_2021-08-13_19-08-32/MRM_final_verification_0530.skyd

13 Aug 2021 16:42:07,967 INFO : Updating dataFileUrls for run Response_curve_0520_2021-08-13_19-12-34.sky.zip; targetedms run ID 118117

13 Aug 2021 16:42:07,967 INFO : Updating dataFileUrl...

13 Aug 2021 16:42:07,967 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115567/Response_curve_0520_2021-08-13_19-12-34.sky.zip

13 Aug 2021 16:42:07,967 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM/@files/Response_curve_0520_2021-08-13_19-12-34.sky.zip

13 Aug 2021 16:42:07,969 INFO : Updating dataFileUrl...

13 Aug 2021 16:42:07,969 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM_6cd7cab8-debd-1039-a2b1-fea6ddf522ee/_temp__2021-08-13_16-41-43/export/xar/experiments_and_runs.xar.exploded/Run115567/Response_curve_0520_2021-08-13_19-12-34/Response_curve_0520.skyd

13 Aug 2021 16:42:07,969 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Seoul%20National%20University%20Proteomics%20Core%20-%20PPROM/@files/Response_curve_0520_2021-08-13_19-12-34/Response_curve_0520.skyd

13 Aug 2021 16:42:07,978 INFO : Creating a reviewer account.

13 Aug 2021 16:42:08,192 INFO : Created reviewer with email: User panorama+reviewer54@proteinms.net

13 Aug 2021 16:42:08,199 INFO : Hiding the Data Pipeline tab.

13 Aug 2021 16:42:08,336 INFO : Emailing submitter.

13 Aug 2021 16:42:08,460 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'