11 Mar 2021 11:15:08,064 INFO : Copying experiment "MRM for validation of Brain tumor biomarkers" from folder /IIT Bombay - Proteomics/Brain_Tumor_marker_MRM to /Panorama Public/2021/IIT Bombay Proteomics - Brain_Tumor_marker_MRM

11 Mar 2021 11:15:08,064 INFO : =======================================

11 Mar 2021 11:15:08,270 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

11 Mar 2021 11:15:08,270 INFO : 

11 Mar 2021 11:15:08,271 INFO : Exporting experiment.

11 Mar 2021 11:26:53,980 INFO : 

11 Mar 2021 11:26:53,980 INFO : Experiment export completed successfully.

11 Mar 2021 11:26:53,980 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

11 Mar 2021 11:26:54,095 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

11 Mar 2021 11:26:54,095 INFO : 

11 Mar 2021 11:26:54,095 INFO : Importing experiment.

11 Mar 2021 11:26:54,104 INFO : Loading folder properties (folder type, settings and active modules)

11 Mar 2021 11:26:54,297 INFO : Done importing folder properties (folder type, settings and active modules)

11 Mar 2021 11:26:54,302 INFO : Loading etl definitions

11 Mar 2021 11:26:54,306 INFO : Loading wikis

11 Mar 2021 11:26:54,308 INFO : 0 wikis imported

11 Mar 2021 11:26:54,308 INFO : Done importing wikis

11 Mar 2021 11:26:54,308 INFO : Starting to copy files

11 Mar 2021 11:28:54,918 INFO : 45 files copied, now copying Glioma_tissue_MRM.sky

11 Mar 2021 11:28:55,204 INFO : 47 files copied, now copying Glioma_tissue_MRM.skyl

11 Mar 2021 11:29:17,454 INFO : 53 files copied, now copying human_hcd_tryp_best.msp

11 Mar 2021 11:29:23,467 INFO : 55 files copied, now copying Glioma_tissue_MRM.skyl

11 Mar 2021 11:29:48,759 INFO : 61 files copied, now copying Medulloblastoma_MRM.skyd

11 Mar 2021 11:30:11,559 INFO : 68 files copied, now copying Meningioma_tissue_MRM.skyl

11 Mar 2021 11:30:34,531 INFO : 75 files copied, now copying Glioma_tissue_MRM.skyl

11 Mar 2021 11:30:56,354 INFO : 81 files copied, now copying MCF-7_QC_Analysed.skyl

11 Mar 2021 11:30:56,535 INFO : 85 files copied, now copying Meningioma_CSF_MRM.sky.view

11 Mar 2021 11:31:14,625 INFO : 90 files copied, now copying Glioma_CSF_MRM.sky

11 Mar 2021 11:31:34,103 INFO : 95 files copied, now copying 03022021_MB_MG_finallist_MB_C3.raw

11 Mar 2021 11:31:48,887 INFO : Copied 154 files

11 Mar 2021 11:31:48,887 INFO : Ensuring exp.data rows exist for imported files

11 Mar 2021 11:31:51,638 INFO : Loading xar

11 Mar 2021 11:32:28,054 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,059 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,095 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,096 DEBUG: Protocol import complete

11 Mar 2021 11:32:28,195 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8326:MRM+for+validation+of+Brain+tumor+biomarkers'

11 Mar 2021 11:32:28,195 DEBUG: Experiment/Run group import complete

11 Mar 2021 11:32:28,309 DEBUG: Protocol action set import complete

11 Mar 2021 11:32:28,345 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,366 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8326:0b267189-649f-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,393 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8326:0b266f73-649f-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,394 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,403 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,405 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8326:0b2671eb-649f-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,428 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,442 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8326:de00cde6-6494-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,454 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8326:9c9dde46-6491-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,454 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,527 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,529 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8326:de00ce39-6494-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,551 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,569 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8326:f96cf03f-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,581 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8326:f96cf023-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,581 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,588 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,589 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8326:f96cf059-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,624 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,638 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8326:f96ced2f-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,649 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8326:f96cecfa-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,650 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,657 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,658 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8326:f96ced52-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,681 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,710 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8326:f96ce8a2-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,722 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8326:f96ce872-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,722 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,728 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,730 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8326:f96ce8b5-532e-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,751 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,765 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8326:1ab16572-532b-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,776 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8326:1ab163cb-532b-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,776 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,782 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,784 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8326:7afc0328-532c-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,805 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,819 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8326:b802542d-5329-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,831 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8326:b80252dd-5329-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,831 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,837 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,839 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8326:b802546c-5329-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,860 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip'

11 Mar 2021 11:32:28,900 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8326:18025727-5326-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,911 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8326:180255fb-5326-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,912 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Core'

11 Mar 2021 11:32:28,918 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8326:TargetedMS.ImportSkyZip.Output'

11 Mar 2021 11:32:28,919 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8326:1802576c-5326-1039-9674-3013bb9b91fd'

11 Mar 2021 11:32:28,936 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run103478/Meningioma_tissue_MRM_2021-03-11_19-28-51/Meningioma_tissue_MRM.skyd into the system

11 Mar 2021 11:32:28,937 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run103478/Meningioma_tissue_MRM_2021-03-11_19-28-51/Meningioma_tissue_MRM.skyd into the system

11 Mar 2021 11:32:28,938 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run103478/Meningioma_tissue_MRM_2021-03-11_19-28-51.sky.zip into the system

11 Mar 2021 11:32:28,941 INFO : Starting import from Meningioma_tissue_MRM_2021-03-11_19-28-51.sky.zip

11 Mar 2021 11:32:28,961 INFO : Starting to import Skyline document from Meningioma_tissue_MRM_2021-03-11_19-28-51.sky.zip

11 Mar 2021 11:32:28,963 INFO : Expanding Human_proteome_new.protdb

11 Mar 2021 11:32:31,939 INFO : Expanding human_hcd_tryp_best.msp

11 Mar 2021 11:32:51,896 INFO : Expanding Meningioma_shuvo_lib.blib

11 Mar 2021 11:32:52,265 INFO : Expanding Meningioma_tissue_MRM.skyd

11 Mar 2021 11:32:52,274 INFO : Expanding Meningioma_tissue_MRM.sky.view

11 Mar 2021 11:32:52,274 INFO : Expanding Meningioma_tissue_MRM.sky

11 Mar 2021 11:32:52,276 INFO : Expanding Meningioma_tissue_MRM.skyl

11 Mar 2021 11:32:52,282 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

11 Mar 2021 11:32:52,310 INFO : 4% Done

11 Mar 2021 11:32:52,379 DEBUG: Starting to load chromatogram headers

11 Mar 2021 11:32:52,381 DEBUG: Done loading chromatogram headers

11 Mar 2021 11:32:52,525 INFO : Inserting sp|P10909|CLUS_HUMAN

11 Mar 2021 11:32:52,592 INFO : 8% Done

11 Mar 2021 11:32:52,670 INFO : 14% Done

11 Mar 2021 11:32:52,743 INFO : 24% Done

11 Mar 2021 11:32:52,799 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:32:52,847 INFO : Inserting sp|P01034|CYTC_HUMAN

11 Mar 2021 11:32:52,870 INFO : 35% Done

11 Mar 2021 11:32:53,008 INFO : 42% Done

11 Mar 2021 11:32:53,145 INFO : 50% Done

11 Mar 2021 11:32:53,261 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:32:53,265 INFO : 51% Done

11 Mar 2021 11:32:53,273 INFO : Inserting sp|P08670|VIME_HUMAN

11 Mar 2021 11:32:53,283 INFO : 61% Done

11 Mar 2021 11:32:53,368 INFO : 68% Done

11 Mar 2021 11:32:53,453 INFO : 75% Done

11 Mar 2021 11:32:53,526 INFO : 80% Done

11 Mar 2021 11:32:53,590 DEBUG: Total peptides inserted: 4

11 Mar 2021 11:32:53,592 INFO : Done parsing Skyline document.

11 Mar 2021 11:32:53,597 INFO : Calculating fold changes

11 Mar 2021 11:32:53,597 DEBUG: Calculating fold change for group comparison Tumor vs Healthy, 1 of 1

11 Mar 2021 11:32:53,885 INFO : 98% Done

11 Mar 2021 11:32:53,885 INFO : Done calculating fold changes.

11 Mar 2021 11:32:54,857 INFO : Creating and populating temp tables for Proportion values

11 Mar 2021 11:32:54,997 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 Mar 2021 11:32:55,024 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 Mar 2021 11:32:55,052 INFO : Cleaning up temp tables

11 Mar 2021 11:32:55,495 INFO : Completed import of Skyline document from Meningioma_tissue_MRM_2021-03-11_19-28-51.sky.zip

11 Mar 2021 11:32:55,502 INFO : 100% Done

11 Mar 2021 11:32:55,511 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run103478/Meningioma_tissue_MRM_2021-03-11_19-28-51.sky.zip into the system

11 Mar 2021 11:32:55,511 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run103472/Glioma_tissue_MRM_2021-03-11_17-52-52/Glioma_tissue_MRM.skyd into the system

11 Mar 2021 11:32:55,512 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run103472/Glioma_tissue_MRM_2021-03-11_17-52-52/Glioma_tissue_MRM.skyd into the system

11 Mar 2021 11:32:55,512 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run103472/Glioma_tissue_MRM_2021-03-11_17-52-52.sky.zip into the system

11 Mar 2021 11:32:55,516 INFO : Starting import from Glioma_tissue_MRM_2021-03-11_17-52-52.sky.zip

11 Mar 2021 11:32:55,522 INFO : Starting to import Skyline document from Glioma_tissue_MRM_2021-03-11_17-52-52.sky.zip

11 Mar 2021 11:32:55,523 INFO : Expanding Human_proteome_new.protdb

11 Mar 2021 11:32:59,568 INFO : Expanding human_hcd_tryp_best.msp

11 Mar 2021 11:33:17,787 INFO : Expanding Glioma_tissue_MRM.skyd

11 Mar 2021 11:33:17,800 INFO : Expanding Glioma_tissue_MRM.sky.view

11 Mar 2021 11:33:17,800 INFO : Expanding Glioma_tissue_MRM.sky

11 Mar 2021 11:33:17,802 INFO : Expanding Glioma_tissue_MRM.skyl

11 Mar 2021 11:33:17,815 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

11 Mar 2021 11:33:17,887 INFO : 2% Done

11 Mar 2021 11:33:17,924 DEBUG: Starting to load chromatogram headers

11 Mar 2021 11:33:17,925 DEBUG: Done loading chromatogram headers

11 Mar 2021 11:33:18,054 INFO : Inserting sp|P04179|SODM_HUMAN

11 Mar 2021 11:33:18,130 INFO : 10% Done

11 Mar 2021 11:33:18,283 INFO : 13% Done

11 Mar 2021 11:33:18,358 INFO : 20% Done

11 Mar 2021 11:33:18,449 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:33:18,508 INFO : Inserting sp|P04083|ANXA1_HUMAN

11 Mar 2021 11:33:18,534 INFO : 25% Done

11 Mar 2021 11:33:18,596 INFO : 30% Done

11 Mar 2021 11:33:18,722 INFO : 34% Done

11 Mar 2021 11:33:18,785 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:33:18,790 INFO : 35% Done

11 Mar 2021 11:33:18,795 INFO : Inserting sp|P08670|VIME_HUMAN

11 Mar 2021 11:33:18,800 INFO : 45% Done

11 Mar 2021 11:33:18,852 INFO : 50% Done

11 Mar 2021 11:33:18,882 INFO : 56% Done

11 Mar 2021 11:33:18,915 INFO : 60% Done

11 Mar 2021 11:33:18,943 INFO : 69% Done

11 Mar 2021 11:33:19,003 INFO : 80% Done

11 Mar 2021 11:33:19,095 DEBUG: Total peptides inserted: 6

11 Mar 2021 11:33:19,096 INFO : Done parsing Skyline document.

11 Mar 2021 11:33:19,099 INFO : Calculating fold changes

11 Mar 2021 11:33:19,099 DEBUG: Calculating fold change for group comparison Tumor vs Healthy, 1 of 1

11 Mar 2021 11:33:19,324 INFO : 98% Done

11 Mar 2021 11:33:19,324 INFO : Done calculating fold changes.

11 Mar 2021 11:33:21,373 INFO : Creating and populating temp tables for Proportion values

11 Mar 2021 11:33:21,428 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 Mar 2021 11:33:21,539 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 Mar 2021 11:33:21,549 INFO : Cleaning up temp tables

11 Mar 2021 11:33:21,558 INFO : Completed import of Skyline document from Glioma_tissue_MRM_2021-03-11_17-52-52.sky.zip

11 Mar 2021 11:33:21,562 INFO : 100% Done

11 Mar 2021 11:33:21,583 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run103472/Glioma_tissue_MRM_2021-03-11_17-52-52.sky.zip into the system

11 Mar 2021 11:33:21,583 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101787/BSA_QC_standard%20curve_2021-02-17_14-57-03/BSA_QC_standard%20curve.skyd into the system

11 Mar 2021 11:33:21,584 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101787/BSA_QC_standard%20curve_2021-02-17_14-57-03/BSA_QC_standard%20curve.skyd into the system

11 Mar 2021 11:33:21,584 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101787/BSA_QC_standard%20curve_2021-02-17_14-57-03.sky.zip into the system

11 Mar 2021 11:33:21,586 INFO : Starting import from BSA_QC_standard curve_2021-02-17_14-57-03.sky.zip

11 Mar 2021 11:33:21,589 INFO : Starting to import Skyline document from BSA_QC_standard curve_2021-02-17_14-57-03.sky.zip

11 Mar 2021 11:33:21,590 INFO : Expanding BSA_QC_standard curve.skyd

11 Mar 2021 11:33:21,592 INFO : Expanding BSA_QC_standard curve.sky.view

11 Mar 2021 11:33:21,592 INFO : Expanding BSA_QC_standard curve.sky

11 Mar 2021 11:33:21,593 INFO : Expanding BSA_QC_standard curve.skyl

11 Mar 2021 11:33:21,598 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

11 Mar 2021 11:33:21,606 INFO : 5% Done

11 Mar 2021 11:33:21,609 DEBUG: Starting to load chromatogram headers

11 Mar 2021 11:33:21,609 DEBUG: Done loading chromatogram headers

11 Mar 2021 11:33:21,683 INFO : Inserting BSA

11 Mar 2021 11:33:21,696 INFO : 14% Done

11 Mar 2021 11:33:21,768 INFO : 27% Done

11 Mar 2021 11:33:21,849 INFO : 36% Done

11 Mar 2021 11:33:21,918 INFO : 46% Done

11 Mar 2021 11:33:21,989 INFO : 54% Done

11 Mar 2021 11:33:22,029 INFO : 70% Done

11 Mar 2021 11:33:22,080 INFO : 80% Done

11 Mar 2021 11:33:22,196 DEBUG: Total peptides inserted: 7

11 Mar 2021 11:33:22,198 INFO : Done parsing Skyline document.

11 Mar 2021 11:33:22,205 INFO : No group comparisons found.

11 Mar 2021 11:33:22,205 INFO : Calculating calibration curves

11 Mar 2021 11:33:22,206 DEBUG: Calculating calibration curve for BSA, 1 of 1

11 Mar 2021 11:33:22,466 INFO : 98% Done

11 Mar 2021 11:33:22,512 INFO : Done calculating calibration curves.

11 Mar 2021 11:33:23,176 INFO : Creating and populating temp tables for Proportion values

11 Mar 2021 11:33:23,205 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 Mar 2021 11:33:23,215 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 Mar 2021 11:33:23,222 INFO : Cleaning up temp tables

11 Mar 2021 11:33:23,777 INFO : Completed import of Skyline document from BSA_QC_standard curve_2021-02-17_14-57-03.sky.zip

11 Mar 2021 11:33:23,785 INFO : 100% Done

11 Mar 2021 11:33:23,797 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101787/BSA_QC_standard%20curve_2021-02-17_14-57-03.sky.zip into the system

11 Mar 2021 11:33:23,797 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101786/BSA_QC_Analysed_2021-02-17_14-56-13/BSA_QC_Analysed.skyd into the system

11 Mar 2021 11:33:23,799 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101786/BSA_QC_Analysed_2021-02-17_14-56-13/BSA_QC_Analysed.skyd into the system

11 Mar 2021 11:33:23,799 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101786/BSA_QC_Analysed_2021-02-17_14-56-13.sky.zip into the system

11 Mar 2021 11:33:23,804 INFO : Starting import from BSA_QC_Analysed_2021-02-17_14-56-13.sky.zip

11 Mar 2021 11:33:23,812 INFO : Starting to import Skyline document from BSA_QC_Analysed_2021-02-17_14-56-13.sky.zip

11 Mar 2021 11:33:23,812 INFO : Expanding BSA_QC_Analysed.skyd

11 Mar 2021 11:33:23,815 INFO : Expanding BSA_QC_Analysed.sky.view

11 Mar 2021 11:33:23,816 INFO : Expanding BSA_QC_Analysed.sky

11 Mar 2021 11:33:23,818 INFO : Expanding BSA_QC_Analysed.skyl

11 Mar 2021 11:33:23,831 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

11 Mar 2021 11:33:23,845 INFO : 5% Done

11 Mar 2021 11:33:23,855 DEBUG: Starting to load chromatogram headers

11 Mar 2021 11:33:23,856 DEBUG: Done loading chromatogram headers

11 Mar 2021 11:33:23,949 INFO : Inserting BSA

11 Mar 2021 11:33:23,962 INFO : 17% Done

11 Mar 2021 11:33:24,018 INFO : 32% Done

11 Mar 2021 11:33:24,094 INFO : 43% Done

11 Mar 2021 11:33:24,195 INFO : 54% Done

11 Mar 2021 11:33:24,244 INFO : 68% Done

11 Mar 2021 11:33:24,304 INFO : 87% Done

11 Mar 2021 11:33:24,380 INFO : 98% Done

11 Mar 2021 11:33:24,430 DEBUG: Total peptides inserted: 7

11 Mar 2021 11:33:24,432 INFO : Done parsing Skyline document.

11 Mar 2021 11:33:24,972 INFO : Creating and populating temp tables for Proportion values

11 Mar 2021 11:33:25,000 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 Mar 2021 11:33:25,010 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 Mar 2021 11:33:25,017 INFO : Cleaning up temp tables

11 Mar 2021 11:33:25,021 INFO : Completed import of Skyline document from BSA_QC_Analysed_2021-02-17_14-56-13.sky.zip

11 Mar 2021 11:33:25,034 INFO : 100% Done

11 Mar 2021 11:33:25,070 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101786/BSA_QC_Analysed_2021-02-17_14-56-13.sky.zip into the system

11 Mar 2021 11:33:25,070 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101785/MCF-7_QC_Analysed_2021-02-17_14-54-14/MCF-7_QC_Analysed.skyd into the system

11 Mar 2021 11:33:25,071 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101785/MCF-7_QC_Analysed_2021-02-17_14-54-14/MCF-7_QC_Analysed.skyd into the system

11 Mar 2021 11:33:25,072 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101785/MCF-7_QC_Analysed_2021-02-17_14-54-14.sky.zip into the system

11 Mar 2021 11:33:25,077 INFO : Starting import from MCF-7_QC_Analysed_2021-02-17_14-54-14.sky.zip

11 Mar 2021 11:33:25,085 INFO : Starting to import Skyline document from MCF-7_QC_Analysed_2021-02-17_14-54-14.sky.zip

11 Mar 2021 11:33:25,087 INFO : Expanding MCF-7_QC_Analysed.skyd

11 Mar 2021 11:33:25,098 INFO : Expanding MCF-7_QC_Analysed.sky.view

11 Mar 2021 11:33:25,099 INFO : Expanding MCF-7_QC_Analysed.sky

11 Mar 2021 11:33:25,102 INFO : Expanding MCF-7_QC_Analysed.skyl

11 Mar 2021 11:33:25,115 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

11 Mar 2021 11:33:25,129 INFO : 5% Done

11 Mar 2021 11:33:25,146 DEBUG: Starting to load chromatogram headers

11 Mar 2021 11:33:25,147 DEBUG: Done loading chromatogram headers

11 Mar 2021 11:33:25,270 INFO : Inserting sp|P04075|ALDOA_HUMAN

11 Mar 2021 11:33:25,306 INFO : 25% Done

11 Mar 2021 11:33:25,443 INFO : 36% Done

11 Mar 2021 11:33:25,514 DEBUG: Total peptides inserted: 2

11 Mar 2021 11:33:25,520 INFO : 39% Done

11 Mar 2021 11:33:25,568 INFO : Inserting sp|P04406|G3P_HUMAN

11 Mar 2021 11:33:25,647 INFO : 54% Done

11 Mar 2021 11:33:25,723 INFO : 78% Done

11 Mar 2021 11:33:25,826 INFO : 84% Done

11 Mar 2021 11:33:25,867 INFO : 98% Done

11 Mar 2021 11:33:25,941 DEBUG: Total peptides inserted: 4

11 Mar 2021 11:33:25,943 INFO : Done parsing Skyline document.

11 Mar 2021 11:33:26,235 INFO : Creating and populating temp tables for Proportion values

11 Mar 2021 11:33:26,262 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 Mar 2021 11:33:26,270 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 Mar 2021 11:33:26,276 INFO : Cleaning up temp tables

11 Mar 2021 11:33:26,284 INFO : Completed import of Skyline document from MCF-7_QC_Analysed_2021-02-17_14-54-14.sky.zip

11 Mar 2021 11:33:26,291 INFO : 100% Done

11 Mar 2021 11:33:26,301 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101785/MCF-7_QC_Analysed_2021-02-17_14-54-14.sky.zip into the system

11 Mar 2021 11:33:26,301 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101784/Medulloblastoma_MRM_2021-02-17_14-29-27/Medulloblastoma_MRM.skyd into the system

11 Mar 2021 11:33:26,304 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101784/Medulloblastoma_MRM_2021-02-17_14-29-27/Medulloblastoma_MRM.skyd into the system

11 Mar 2021 11:33:26,304 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101784/Medulloblastoma_MRM_2021-02-17_14-29-27.sky.zip into the system

11 Mar 2021 11:33:26,308 INFO : Starting import from Medulloblastoma_MRM_2021-02-17_14-29-27.sky.zip

11 Mar 2021 11:33:26,314 INFO : Starting to import Skyline document from Medulloblastoma_MRM_2021-02-17_14-29-27.sky.zip

11 Mar 2021 11:33:26,316 INFO : Expanding Human_proteome_new.protdb

11 Mar 2021 11:33:29,489 INFO : Expanding Medulloblastoma_LFQ.blib

11 Mar 2021 11:33:29,927 INFO : Expanding human_hcd_tryp_best.msp

11 Mar 2021 11:33:46,538 INFO : Expanding Medulloblastoma_MRM.skyd

11 Mar 2021 11:33:46,547 INFO : Expanding Medulloblastoma_MRM.sky.view

11 Mar 2021 11:33:46,548 INFO : Expanding Medulloblastoma_MRM.sky

11 Mar 2021 11:33:46,549 INFO : Expanding Medulloblastoma_MRM.skyl

11 Mar 2021 11:33:46,561 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

11 Mar 2021 11:33:46,573 INFO : 6% Done

11 Mar 2021 11:33:46,592 DEBUG: Starting to load chromatogram headers

11 Mar 2021 11:33:46,592 DEBUG: Done loading chromatogram headers

11 Mar 2021 11:33:46,805 INFO : Inserting sp|P11137|MTAP2_HUMAN

11 Mar 2021 11:33:46,870 INFO : 15% Done

11 Mar 2021 11:33:46,982 INFO : 22% Done

11 Mar 2021 11:33:47,113 INFO : 29% Done

11 Mar 2021 11:33:47,160 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:33:47,190 INFO : Inserting sp|Q13435|SF3B2_HUMAN

11 Mar 2021 11:33:47,228 INFO : 39% Done

11 Mar 2021 11:33:47,306 INFO : 43% Done

11 Mar 2021 11:33:47,377 INFO : 51% Done

11 Mar 2021 11:33:47,424 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:33:47,432 INFO : Inserting sp|P08670|VIME_HUMAN

11 Mar 2021 11:33:47,439 INFO : 62% Done

11 Mar 2021 11:33:47,489 INFO : 69% Done

11 Mar 2021 11:33:47,515 INFO : 75% Done

11 Mar 2021 11:33:47,537 INFO : 80% Done

11 Mar 2021 11:33:47,556 DEBUG: Total peptides inserted: 4

11 Mar 2021 11:33:47,557 INFO : Done parsing Skyline document.

11 Mar 2021 11:33:47,560 INFO : Calculating fold changes

11 Mar 2021 11:33:47,561 DEBUG: Calculating fold change for group comparison Tumor vs Healthy, 1 of 1

11 Mar 2021 11:33:47,703 INFO : 98% Done

11 Mar 2021 11:33:47,703 INFO : Done calculating fold changes.

11 Mar 2021 11:33:49,211 INFO : Creating and populating temp tables for Proportion values

11 Mar 2021 11:33:49,251 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 Mar 2021 11:33:49,274 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 Mar 2021 11:33:49,293 INFO : Cleaning up temp tables

11 Mar 2021 11:33:49,798 INFO : Completed import of Skyline document from Medulloblastoma_MRM_2021-02-17_14-29-27.sky.zip

11 Mar 2021 11:33:49,806 INFO : 100% Done

11 Mar 2021 11:33:49,817 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101784/Medulloblastoma_MRM_2021-02-17_14-29-27.sky.zip into the system

11 Mar 2021 11:33:49,818 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101781/Glioma_CSF_MRM_2021-02-17_13-57-43/Glioma_CSF_MRM.skyd into the system

11 Mar 2021 11:33:49,819 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101781/Glioma_CSF_MRM_2021-02-17_13-57-43/Glioma_CSF_MRM.skyd into the system

11 Mar 2021 11:33:49,819 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101781/Glioma_CSF_MRM_2021-02-17_13-57-43.sky.zip into the system

11 Mar 2021 11:33:49,824 INFO : Starting import from Glioma_CSF_MRM_2021-02-17_13-57-43.sky.zip

11 Mar 2021 11:33:49,832 INFO : Starting to import Skyline document from Glioma_CSF_MRM_2021-02-17_13-57-43.sky.zip

11 Mar 2021 11:33:49,835 INFO : Expanding human_hcd_tryp_best.msp

11 Mar 2021 11:34:07,631 INFO : Expanding Glioma_CSF_MRM.skyd

11 Mar 2021 11:34:07,660 INFO : Expanding Glioma_CSF_MRM.sky.view

11 Mar 2021 11:34:07,661 INFO : Expanding Glioma_CSF_MRM.sky

11 Mar 2021 11:34:07,662 INFO : Expanding Glioma_CSF_MRM.skyl

11 Mar 2021 11:34:07,666 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

11 Mar 2021 11:34:07,700 INFO : 4% Done

11 Mar 2021 11:34:07,740 DEBUG: Starting to load chromatogram headers

11 Mar 2021 11:34:07,741 DEBUG: Done loading chromatogram headers

11 Mar 2021 11:34:07,915 INFO : Inserting sp|P41222|PTGDS_HUMAN

11 Mar 2021 11:34:07,962 INFO : 7% Done

11 Mar 2021 11:34:08,029 INFO : 12% Done

11 Mar 2021 11:34:08,080 INFO : 18% Done

11 Mar 2021 11:34:08,132 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:08,198 INFO : Inserting sp|P04004|VTNC_HUMAN

11 Mar 2021 11:34:08,229 INFO : 22% Done

11 Mar 2021 11:34:08,279 INFO : 27% Done

11 Mar 2021 11:34:08,334 INFO : 36% Done

11 Mar 2021 11:34:08,408 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:08,450 INFO : Inserting sp|P01024|CO3_HUMAN

11 Mar 2021 11:34:08,469 INFO : 41% Done

11 Mar 2021 11:34:08,527 INFO : 44% Done

11 Mar 2021 11:34:08,580 INFO : 50% Done

11 Mar 2021 11:34:08,638 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:08,643 INFO : 51% Done

11 Mar 2021 11:34:08,703 INFO : Inserting sp|P02647|APOA1_HUMAN

11 Mar 2021 11:34:08,738 INFO : 55% Done

11 Mar 2021 11:34:08,817 INFO : 61% Done

11 Mar 2021 11:34:08,895 INFO : 66% Done

11 Mar 2021 11:34:08,951 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:08,979 INFO : Inserting sp|P02649|APOE_HUMAN

11 Mar 2021 11:34:08,992 INFO : 71% Done

11 Mar 2021 11:34:09,089 INFO : 74% Done

11 Mar 2021 11:34:09,167 INFO : 80% Done

11 Mar 2021 11:34:09,217 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:09,218 INFO : Done parsing Skyline document.

11 Mar 2021 11:34:09,221 INFO : Calculating fold changes

11 Mar 2021 11:34:09,222 DEBUG: Calculating fold change for group comparison Glioma LGG vs GBM, 1 of 1

11 Mar 2021 11:34:09,417 INFO : 98% Done

11 Mar 2021 11:34:09,417 INFO : Done calculating fold changes.

11 Mar 2021 11:34:09,696 INFO : Creating and populating temp tables for Proportion values

11 Mar 2021 11:34:09,743 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 Mar 2021 11:34:09,774 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 Mar 2021 11:34:09,797 INFO : Cleaning up temp tables

11 Mar 2021 11:34:10,281 INFO : Completed import of Skyline document from Glioma_CSF_MRM_2021-02-17_13-57-43.sky.zip

11 Mar 2021 11:34:10,289 INFO : 100% Done

11 Mar 2021 11:34:10,300 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101781/Glioma_CSF_MRM_2021-02-17_13-57-43.sky.zip into the system

11 Mar 2021 11:34:10,300 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101780/Meningioma_CSF_MRM_2021-02-17_13-51-29/Meningioma_CSF_MRM.skyd into the system

11 Mar 2021 11:34:10,301 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101780/Meningioma_CSF_MRM_2021-02-17_13-51-29/Meningioma_CSF_MRM.skyd into the system

11 Mar 2021 11:34:10,302 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101780/Meningioma_CSF_MRM_2021-02-17_13-51-29.sky.zip into the system

11 Mar 2021 11:34:10,307 INFO : Starting import from Meningioma_CSF_MRM_2021-02-17_13-51-29.sky.zip

11 Mar 2021 11:34:10,315 INFO : Starting to import Skyline document from Meningioma_CSF_MRM_2021-02-17_13-51-29.sky.zip

11 Mar 2021 11:34:10,317 INFO : Expanding human_hcd_tryp_best.msp

11 Mar 2021 11:34:33,654 INFO : Expanding Meningioma_CSF_MRM.skyd

11 Mar 2021 11:34:33,676 INFO : Expanding Meningioma_CSF_MRM.sky.view

11 Mar 2021 11:34:33,677 INFO : Expanding Meningioma_CSF_MRM.sky

11 Mar 2021 11:34:33,678 INFO : Expanding Meningioma_CSF_MRM.skyl

11 Mar 2021 11:34:33,682 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

11 Mar 2021 11:34:33,689 INFO : 5% Done

11 Mar 2021 11:34:33,702 DEBUG: Starting to load chromatogram headers

11 Mar 2021 11:34:33,702 DEBUG: Done loading chromatogram headers

11 Mar 2021 11:34:33,733 INFO : Inserting sp|P41222|PTGDS_HUMAN

11 Mar 2021 11:34:33,738 INFO : 9% Done

11 Mar 2021 11:34:33,756 INFO : 12% Done

11 Mar 2021 11:34:33,772 INFO : 18% Done

11 Mar 2021 11:34:33,788 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:33,791 INFO : 19% Done

11 Mar 2021 11:34:33,794 INFO : Inserting sp|P04004|VTNC_HUMAN

11 Mar 2021 11:34:33,798 INFO : 23% Done

11 Mar 2021 11:34:33,815 INFO : 28% Done

11 Mar 2021 11:34:33,833 INFO : 35% Done

11 Mar 2021 11:34:33,851 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:33,855 INFO : Inserting sp|P01024|CO3_HUMAN

11 Mar 2021 11:34:33,858 INFO : 42% Done

11 Mar 2021 11:34:33,875 INFO : 44% Done

11 Mar 2021 11:34:33,891 INFO : 50% Done

11 Mar 2021 11:34:33,905 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:33,909 INFO : Inserting sp|P02647|APOA1_HUMAN

11 Mar 2021 11:34:33,912 INFO : 54% Done

11 Mar 2021 11:34:33,928 INFO : 60% Done

11 Mar 2021 11:34:33,947 INFO : 66% Done

11 Mar 2021 11:34:33,961 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:33,965 INFO : Inserting sp|P02649|APOE_HUMAN

11 Mar 2021 11:34:33,968 INFO : 70% Done

11 Mar 2021 11:34:33,985 INFO : 75% Done

11 Mar 2021 11:34:34,001 INFO : 80% Done

11 Mar 2021 11:34:34,019 DEBUG: Total peptides inserted: 3

11 Mar 2021 11:34:34,020 INFO : Done parsing Skyline document.

11 Mar 2021 11:34:34,022 INFO : Calculating fold changes

11 Mar 2021 11:34:34,022 DEBUG: Calculating fold change for group comparison MG G1 vs G2, 1 of 1

11 Mar 2021 11:34:34,209 INFO : 98% Done

11 Mar 2021 11:34:34,210 INFO : Done calculating fold changes.

11 Mar 2021 11:34:34,372 INFO : Creating and populating temp tables for Proportion values

11 Mar 2021 11:34:34,403 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 Mar 2021 11:34:34,437 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 Mar 2021 11:34:34,464 INFO : Cleaning up temp tables

11 Mar 2021 11:34:34,865 INFO : Completed import of Skyline document from Meningioma_CSF_MRM_2021-02-17_13-51-29.sky.zip

11 Mar 2021 11:34:34,873 INFO : 100% Done

11 Mar 2021 11:34:34,885 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Brain_Tumor_marker_MRM_d479955a-64ca-1039-9674-3013bb9b91fd/_temp__2021-03-11_11-15-07/export/xar/experiments_and_runs.xar.exploded/Run101780/Meningioma_CSF_MRM_2021-02-17_13-51-29.sky.zip into the system

11 Mar 2021 11:34:34,974 INFO : Done importing xar

11 Mar 2021 11:34:34,980 INFO : Loading pages and webpart properties

11 Mar 2021 11:34:35,262 INFO : Done importing pages and webpart properties

11 Mar 2021 11:34:35,262 INFO : 

11 Mar 2021 11:34:35,263 INFO : Experiment import completed successfully.

11 Mar 2021 11:34:35,263 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

11 Mar 2021 11:34:35,344 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

11 Mar 2021 11:34:35,345 INFO : 

11 Mar 2021 11:34:35,345 INFO : Finishing up experiment copy.

11 Mar 2021 11:34:35,348 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

11 Mar 2021 11:34:35,355 INFO : Copying ProteomeXchange ID from the previous copy of the data.

11 Mar 2021 11:34:35,373 INFO : Updating access URL to point to the new copy of the data.

11 Mar 2021 11:34:35,405 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

11 Mar 2021 11:34:35,445 INFO : Removing copy permissions given to journal.

11 Mar 2021 11:34:35,493 INFO : Adding read permissions to all users that are folder admins in the source container.

11 Mar 2021 11:34:35,498 INFO : Adding read permissions to all users that had read access to previous copy.

11 Mar 2021 11:34:35,522 INFO : Setting the TargetedMS folder type to 'Experimental Data'

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11 Mar 2021 11:34:35,549 INFO : Updating dataFileUrls for run Meningioma_CSF_MRM_2021-02-17_13-51-29.sky.zip; targetedms run ID 105737

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11 Mar 2021 11:34:35,616 INFO : Updating dataFileUrls for run Medulloblastoma_MRM_2021-02-17_14-29-27.sky.zip; targetedms run ID 105735

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11 Mar 2021 11:34:35,687 INFO : Updating dataFileUrls for run Meningioma_tissue_MRM_2021-03-11_19-28-51.sky.zip; targetedms run ID 105730

11 Mar 2021 11:34:35,688 INFO : Updating dataFileUrl...

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11 Mar 2021 11:34:35,691 INFO : Updating dataFileUrl...

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11 Mar 2021 11:34:35,694 INFO : Hiding the Data Pipeline tab.

11 Mar 2021 11:34:36,606 INFO : Emailing submitter.

11 Mar 2021 11:34:37,571 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'