04 Mar 2021 20:12:37,109 INFO : Copying experiment "Targeted plasma proteome analysis using vacuum-dried protein standards" from folder /KTH - Uhlen Lab/SIS-PrESTs Stability to /Panorama Public/2021/KTH Uhlen Lab - SIS-PrESTs Stability

04 Mar 2021 20:12:37,111 INFO : =======================================

04 Mar 2021 20:12:37,502 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

04 Mar 2021 20:12:37,503 INFO : 

04 Mar 2021 20:12:37,503 INFO : Exporting experiment.

04 Mar 2021 20:41:58,502 INFO : 

04 Mar 2021 20:41:58,515 INFO : Experiment export completed successfully.

04 Mar 2021 20:41:58,515 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

04 Mar 2021 20:44:28,754 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

04 Mar 2021 20:44:28,754 INFO : 

04 Mar 2021 20:44:28,754 INFO : Importing experiment.

04 Mar 2021 20:44:28,776 INFO : Loading folder properties (folder type, settings and active modules)

04 Mar 2021 20:44:28,993 INFO : Done importing folder properties (folder type, settings and active modules)

04 Mar 2021 20:44:29,001 INFO : Loading etl definitions

04 Mar 2021 20:44:29,008 INFO : Loading wikis

04 Mar 2021 20:44:29,038 INFO : 0 wikis imported

04 Mar 2021 20:44:29,039 INFO : Done importing wikis

04 Mar 2021 20:44:29,039 INFO : Starting to copy files

04 Mar 2021 20:46:29,255 INFO : 225 files copied, now copying HPRR1510044_47_rep2.raw

04 Mar 2021 20:48:35,520 INFO : 361 files copied, now copying HF_20190301_QTag_PRM_3m_NON_Sved_p3_A3.raw

04 Mar 2021 20:50:36,392 INFO : 476 files copied, now copying HPRR3230031_69_rep3.raw

04 Mar 2021 20:52:36,454 INFO : 617 files copied, now copying HF_20190214_QTag_PRM_3m_Sved_p3_C6.raw

04 Mar 2021 20:54:37,416 INFO : 761 files copied, now copying HF_20190214_QTag_PRM_3m_Sved_p3_D4.raw

04 Mar 2021 20:56:38,450 INFO : 902 files copied, now copying HF_20190214_QTag_PRM_3m_Sved_p3_D9.raw

04 Mar 2021 20:58:39,423 INFO : 1035 files copied, now copying HF_20190214_QTag_PRM_3m_Sved_p3_B11.raw

04 Mar 2021 21:00:40,266 INFO : 1168 files copied, now copying HF_20190214_QTag_PRM_3m_Sved_p1_H8.raw

04 Mar 2021 21:02:40,490 INFO : 1309 files copied, now copying HPRR2640163_80_rep1_1.raw

04 Mar 2021 21:04:41,094 INFO : 1453 files copied, now copying HPRR3790341_81_rep2.raw

04 Mar 2021 21:05:06,230 INFO : Copied 1481 files

04 Mar 2021 21:05:06,230 INFO : Ensuring exp.data rows exist for imported files

04 Mar 2021 21:05:29,577 INFO : Loading xar

04 Mar 2021 21:05:41,372 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:41,381 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:41,389 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:41,389 DEBUG: Protocol import complete

04 Mar 2021 21:05:41,455 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8308:Targeted+plasma+proteome+analysis+using+vacuum-dried+protein+standards'

04 Mar 2021 21:05:41,455 DEBUG: Experiment/Run group import complete

04 Mar 2021 21:05:41,530 DEBUG: Protocol action set import complete

04 Mar 2021 21:05:41,617 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:41,687 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:2ddddef0-5a69-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,700 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:2ddddea6-5a69-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,700 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:41,710 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:41,711 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:2ddddfe5-5a69-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,734 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:41,756 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:21e24ffc-58e9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,768 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:21e24f9a-58e9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,768 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:41,774 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:41,776 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:77341fc6-58ea-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,796 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:41,810 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:ef213b9c-58e2-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,825 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:ef213b6f-58e2-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,825 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:41,831 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:41,833 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:ef213c45-58e2-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,853 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:41,867 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:1f97e510-58e0-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,880 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:1f97e4f7-58e0-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,880 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:41,887 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:41,889 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:1f97e59b-58e0-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,915 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:41,930 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:fa31601e-58db-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,942 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:fa315ff1-58db-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,942 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:41,949 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:41,951 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:fa316088-58db-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:41,977 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:41,992 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:04ae3d83-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,017 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:04ae3d73-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,017 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:42,022 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:42,024 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:04ae3e03-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,047 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:42,065 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:04ae3b77-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,080 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:04ae3b5f-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,080 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:42,088 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:42,090 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:04ae3bdb-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,116 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:42,128 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:04ae38c1-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,137 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:04ae3890-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,137 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:42,142 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:42,143 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:04ae391a-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,156 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:42,167 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:04ae3550-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,175 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:04ae3502-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,175 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:42,179 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:42,180 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:04ae36bf-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,194 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:42,219 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:2bf5c490-58d6-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,227 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:2bf5c453-58d6-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,227 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:42,232 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:42,233 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:04ae32f1-58d9-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,248 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:42,258 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:2bf5c1d4-58d6-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,266 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:2bf5c1ba-58d6-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,266 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:42,270 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:42,271 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:2bf5c248-58d6-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,333 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip'

04 Mar 2021 21:05:42,344 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8308:2bf5be56-58d6-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,352 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8308:2bf5be40-58d6-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,352 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Core'

04 Mar 2021 21:05:42,378 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8308:TargetedMS.ImportSkyZip.Output'

04 Mar 2021 21:05:42,379 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8308:2bf5bed0-58d6-1039-9674-3013bb9b91fd'

04 Mar 2021 21:05:42,382 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102532/20210219_Deamidation_Prosit_lib_2021-02-26_16-16-58/20210219_Deamidation_Prosit_lib.skyd into the system

04 Mar 2021 21:05:42,382 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102532/20210219_Deamidation_Prosit_lib_2021-02-26_16-16-58/20210219_Deamidation_Prosit_lib.skyd into the system

04 Mar 2021 21:05:42,383 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102532/20210219_Deamidation_Prosit_lib_2021-02-26_16-16-58.sky.zip into the system

04 Mar 2021 21:05:42,384 INFO : Starting import from 20210219_Deamidation_Prosit_lib_2021-02-26_16-16-58.sky.zip

04 Mar 2021 21:05:42,390 INFO : Starting to import Skyline document from 20210219_Deamidation_Prosit_lib_2021-02-26_16-16-58.sky.zip

04 Mar 2021 21:05:42,397 INFO : Expanding QPrESTs_all_w_biog_pep_20190820.protdb

04 Mar 2021 21:05:42,470 INFO : Expanding myPrositLib_All_lists_20190625_20190709.fasta.z3_nce26_1MC.blib

04 Mar 2021 21:05:43,604 INFO : Expanding 20210219_Deamidation_Prosit_lib.skyd

04 Mar 2021 21:05:43,777 INFO : Expanding 20210219_Deamidation_Prosit_lib.sky.view

04 Mar 2021 21:05:43,778 INFO : Expanding 20210219_Deamidation_Prosit_lib.sky

04 Mar 2021 21:05:43,859 INFO : 2% Done

04 Mar 2021 21:05:44,069 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:05:44,071 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:05:44,590 INFO : Inserting AHSG_HPRR350074

04 Mar 2021 21:05:44,676 INFO : 3% Done

04 Mar 2021 21:05:45,007 INFO : 4% Done

04 Mar 2021 21:05:45,219 INFO : 5% Done

04 Mar 2021 21:05:45,330 INFO : 7% Done

04 Mar 2021 21:05:45,452 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:05:45,520 INFO : Inserting PLG_HPRR2320064

04 Mar 2021 21:05:45,566 INFO : 8% Done

04 Mar 2021 21:05:45,669 INFO : 10% Done

04 Mar 2021 21:05:45,925 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:05:46,014 INFO : Inserting TTR_HPRR5000010

04 Mar 2021 21:05:46,055 INFO : 11% Done

04 Mar 2021 21:05:46,242 INFO : 12% Done

04 Mar 2021 21:05:46,394 INFO : 13% Done

04 Mar 2021 21:05:46,650 INFO : 15% Done

04 Mar 2021 21:05:46,896 INFO : 16% Done

04 Mar 2021 21:05:47,082 INFO : 18% Done

04 Mar 2021 21:05:47,234 INFO : 20% Done

04 Mar 2021 21:05:47,553 INFO : 22% Done

04 Mar 2021 21:05:47,844 DEBUG: Total peptides inserted: 8

04 Mar 2021 21:05:47,902 INFO : Inserting A2M_HPRR5000096

04 Mar 2021 21:05:47,918 INFO : 23% Done

04 Mar 2021 21:05:48,071 INFO : 24% Done

04 Mar 2021 21:05:48,250 INFO : 25% Done

04 Mar 2021 21:05:48,412 INFO : 26% Done

04 Mar 2021 21:05:48,727 INFO : 27% Done

04 Mar 2021 21:05:48,925 INFO : 29% Done

04 Mar 2021 21:05:49,128 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:05:49,192 INFO : Inserting SERPINA3_HPRR320015

04 Mar 2021 21:05:49,232 INFO : 30% Done

04 Mar 2021 21:05:49,385 INFO : 31% Done

04 Mar 2021 21:05:49,534 INFO : 32% Done

04 Mar 2021 21:05:49,698 INFO : 34% Done

04 Mar 2021 21:05:50,032 INFO : 35% Done

04 Mar 2021 21:05:50,237 INFO : 36% Done

04 Mar 2021 21:05:50,381 INFO : 38% Done

04 Mar 2021 21:05:50,687 INFO : 40% Done

04 Mar 2021 21:05:50,975 INFO : 41% Done

04 Mar 2021 21:05:51,199 INFO : 42% Done

04 Mar 2021 21:05:51,362 DEBUG: Total peptides inserted: 10

04 Mar 2021 21:05:51,404 INFO : Inserting SERPINA1_HPRR320021

04 Mar 2021 21:05:51,424 INFO : 43% Done

04 Mar 2021 21:05:51,614 INFO : 45% Done

04 Mar 2021 21:05:51,758 INFO : 46% Done

04 Mar 2021 21:05:51,875 INFO : 47% Done

04 Mar 2021 21:05:51,960 INFO : 48% Done

04 Mar 2021 21:05:52,051 INFO : 49% Done

04 Mar 2021 21:05:52,112 INFO : 50% Done

04 Mar 2021 21:05:52,283 INFO : 52% Done

04 Mar 2021 21:05:52,585 INFO : 53% Done

04 Mar 2021 21:05:52,742 INFO : 55% Done

04 Mar 2021 21:05:52,912 INFO : 56% Done

04 Mar 2021 21:05:53,154 INFO : 57% Done

04 Mar 2021 21:05:53,293 INFO : 59% Done

04 Mar 2021 21:05:53,660 INFO : 61% Done

04 Mar 2021 21:05:53,961 DEBUG: Total peptides inserted: 14

04 Mar 2021 21:05:54,017 INFO : Inserting HP_HPR_HPRR3530008

04 Mar 2021 21:05:54,050 INFO : 62% Done

04 Mar 2021 21:05:54,225 INFO : 64% Done

04 Mar 2021 21:05:54,406 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:05:54,449 INFO : Inserting APOA1_HPRR3450265

04 Mar 2021 21:05:54,476 INFO : 66% Done

04 Mar 2021 21:05:54,591 INFO : 67% Done

04 Mar 2021 21:05:54,738 INFO : 68% Done

04 Mar 2021 21:05:54,832 INFO : 70% Done

04 Mar 2021 21:05:54,918 INFO : 72% Done

04 Mar 2021 21:05:55,052 INFO : 73% Done

04 Mar 2021 21:05:55,239 INFO : 74% Done

04 Mar 2021 21:05:55,423 INFO : 75% Done

04 Mar 2021 21:05:55,584 INFO : 76% Done

04 Mar 2021 21:05:55,782 INFO : 77% Done

04 Mar 2021 21:05:55,970 INFO : 78% Done

04 Mar 2021 21:05:56,136 INFO : 80% Done

04 Mar 2021 21:05:56,247 INFO : 81% Done

04 Mar 2021 21:05:56,334 INFO : 82% Done

04 Mar 2021 21:05:56,414 INFO : 83% Done

04 Mar 2021 21:05:56,523 INFO : 84% Done

04 Mar 2021 21:05:56,585 DEBUG: Total peptides inserted: 16

04 Mar 2021 21:05:56,610 INFO : Inserting HP_HPRR5000013

04 Mar 2021 21:05:56,616 INFO : 85% Done

04 Mar 2021 21:05:56,705 INFO : 87% Done

04 Mar 2021 21:05:56,824 INFO : 88% Done

04 Mar 2021 21:05:56,910 INFO : 90% Done

04 Mar 2021 21:05:57,023 INFO : 91% Done

04 Mar 2021 21:05:57,095 INFO : 93% Done

04 Mar 2021 21:05:57,356 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:05:57,409 INFO : Inserting HPX_HPRR4200150

04 Mar 2021 21:05:57,430 INFO : 94% Done

04 Mar 2021 21:05:57,573 INFO : 96% Done

04 Mar 2021 21:05:57,781 INFO : 97% Done

04 Mar 2021 21:05:58,004 INFO : 98% Done

04 Mar 2021 21:05:58,188 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:05:58,190 INFO : Done parsing Skyline document.

04 Mar 2021 21:05:58,193 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:05:58,248 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:05:58,510 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:05:58,695 INFO : Cleaning up temp tables

04 Mar 2021 21:05:58,715 INFO : Completed import of Skyline document from 20210219_Deamidation_Prosit_lib_2021-02-26_16-16-58.sky.zip

04 Mar 2021 21:05:58,723 INFO : 100% Done

04 Mar 2021 21:05:58,735 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102532/20210219_Deamidation_Prosit_lib_2021-02-26_16-16-58.sky.zip into the system

04 Mar 2021 21:05:58,736 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102356/20191205_Digestion_course_exp_2021-02-24_18-20-26/20191205_Digestion_course_exp.skyd into the system

04 Mar 2021 21:05:58,737 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102356/20191205_Digestion_course_exp_2021-02-24_18-20-26/20191205_Digestion_course_exp.skyd into the system

04 Mar 2021 21:05:58,737 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102356/20191205_Digestion_course_exp_2021-02-24_18-20-26.sky.zip into the system

04 Mar 2021 21:05:58,740 INFO : Starting import from 20191205_Digestion_course_exp_2021-02-24_18-20-26.sky.zip

04 Mar 2021 21:05:58,747 INFO : Starting to import Skyline document from 20191205_Digestion_course_exp_2021-02-24_18-20-26.sky.zip

04 Mar 2021 21:05:58,782 INFO : Expanding APOA1.irtdb

04 Mar 2021 21:05:58,794 INFO : Expanding 20191205_Digestion_course_exp.skyd

04 Mar 2021 21:05:59,726 INFO : Expanding 20191205_Digestion_course_exp.sky.view

04 Mar 2021 21:05:59,726 INFO : Expanding 20191205_Digestion_course_exp.sky

04 Mar 2021 21:06:01,480 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:06:01,501 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:06:07,140 INFO : Inserting APOA1_iRT

04 Mar 2021 21:06:07,496 INFO : 1% Done

04 Mar 2021 21:06:08,194 DEBUG: Total peptides inserted: 9

04 Mar 2021 21:06:08,257 INFO : Inserting APOH_HPRR5000011

04 Mar 2021 21:06:09,515 INFO : 2% Done

04 Mar 2021 21:06:10,950 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:06:10,984 INFO : Inserting C4BPB_HPRR4060158

04 Mar 2021 21:06:11,317 INFO : 3% Done

04 Mar 2021 21:06:12,348 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:06:12,426 INFO : Inserting FGB_HPRR350021

04 Mar 2021 21:06:12,987 INFO : 4% Done

04 Mar 2021 21:06:14,094 INFO : 5% Done

04 Mar 2021 21:06:15,280 INFO : 6% Done

04 Mar 2021 21:06:15,825 DEBUG: Total peptides inserted: 15

04 Mar 2021 21:06:15,868 INFO : Inserting ITIH3_HPRR252445

04 Mar 2021 21:06:16,554 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:06:16,603 INFO : Inserting LYZ_HPRR5000270

04 Mar 2021 21:06:16,805 INFO : 7% Done

04 Mar 2021 21:06:17,578 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:06:17,583 INFO : Inserting A2M_HPRR5000096

04 Mar 2021 21:06:18,382 INFO : 8% Done

04 Mar 2021 21:06:19,661 DEBUG: Total peptides inserted: 8

04 Mar 2021 21:06:19,714 INFO : Inserting APOA4_HPRR260124

04 Mar 2021 21:06:19,951 INFO : 9% Done

04 Mar 2021 21:06:21,646 INFO : 10% Done

04 Mar 2021 21:06:22,698 DEBUG: Total peptides inserted: 11

04 Mar 2021 21:06:22,739 INFO : Inserting APOM_HPRR3340379

04 Mar 2021 21:06:23,088 INFO : 11% Done

04 Mar 2021 21:06:24,421 DEBUG: Total peptides inserted: 7

04 Mar 2021 21:06:24,473 INFO : Inserting PZP_HPRR5000019

04 Mar 2021 21:06:24,735 INFO : 12% Done

04 Mar 2021 21:06:26,055 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:06:26,098 INFO : Inserting VTN_HPRR4030673

04 Mar 2021 21:06:26,429 INFO : 13% Done

04 Mar 2021 21:06:27,476 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:06:27,506 INFO : Inserting C5_HPRR5000066

04 Mar 2021 21:06:27,972 INFO : 14% Done

04 Mar 2021 21:06:28,947 DEBUG: Total peptides inserted: 7

04 Mar 2021 21:06:28,972 INFO : Inserting KNG1_HPRR350145

04 Mar 2021 21:06:29,333 INFO : 15% Done

04 Mar 2021 21:06:30,882 INFO : 16% Done

04 Mar 2021 21:06:31,210 DEBUG: Total peptides inserted: 8

04 Mar 2021 21:06:31,215 INFO : Inserting SERPINA1_HPRR320021

04 Mar 2021 21:06:32,340 INFO : 17% Done

04 Mar 2021 21:06:33,528 INFO : 18% Done

04 Mar 2021 21:06:34,796 DEBUG: Total peptides inserted: 15

04 Mar 2021 21:06:34,801 INFO : Inserting SERPINA3_HPRR320015

04 Mar 2021 21:06:35,336 INFO : 19% Done

04 Mar 2021 21:06:36,509 INFO : 20% Done

04 Mar 2021 21:06:36,912 DEBUG: Total peptides inserted: 9

04 Mar 2021 21:06:36,937 INFO : Inserting XXbac-BPG116M5.17_CFB_HPRR350011

04 Mar 2021 21:06:37,976 INFO : 21% Done

04 Mar 2021 21:06:38,521 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:06:38,684 INFO : Inserting CFHR4_HPRR5000138

04 Mar 2021 21:06:39,441 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:06:39,528 INFO : Inserting GC_HPRR350076

04 Mar 2021 21:06:39,576 INFO : 22% Done

04 Mar 2021 21:06:41,367 INFO : 23% Done

04 Mar 2021 21:06:41,957 DEBUG: Total peptides inserted: 8

04 Mar 2021 21:06:41,977 INFO : Inserting SERPINC1_HPRR330198

04 Mar 2021 21:06:42,868 INFO : 24% Done

04 Mar 2021 21:06:44,045 DEBUG: Total peptides inserted: 9

04 Mar 2021 21:06:44,099 INFO : Inserting FN1_HPRR2050095

04 Mar 2021 21:06:44,344 INFO : 25% Done

04 Mar 2021 21:06:45,955 DEBUG: Total peptides inserted: 9

04 Mar 2021 21:06:46,005 INFO : Inserting CD44_HPRR5000277

04 Mar 2021 21:06:46,488 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:06:46,528 INFO : Inserting AMBP_HPRR350094

04 Mar 2021 21:06:46,744 INFO : 26% Done

04 Mar 2021 21:06:47,539 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:06:47,577 INFO : Inserting SERPINA4_HPRR5000084

04 Mar 2021 21:06:47,584 INFO : 27% Done

04 Mar 2021 21:06:48,499 INFO : 28% Done

04 Mar 2021 21:06:49,315 DEBUG: Total peptides inserted: 11

04 Mar 2021 21:06:49,318 INFO : Inserting TTR_HPRR5000010

04 Mar 2021 21:06:49,483 INFO : 29% Done

04 Mar 2021 21:06:50,248 INFO : 30% Done

04 Mar 2021 21:06:50,867 DEBUG: Total peptides inserted: 11

04 Mar 2021 21:06:50,907 INFO : Inserting ADIPOQ_HPRR5000256

04 Mar 2021 21:06:50,931 INFO : 31% Done

04 Mar 2021 21:06:51,178 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:06:51,226 INFO : Inserting F10_HPRR3730416

04 Mar 2021 21:06:51,658 INFO : 32% Done

04 Mar 2021 21:06:51,829 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:06:51,831 INFO : Inserting APOA1_HPRR3450265

04 Mar 2021 21:06:52,219 INFO : 33% Done

04 Mar 2021 21:06:52,906 INFO : 34% Done

04 Mar 2021 21:06:53,334 DEBUG: Total peptides inserted: 15

04 Mar 2021 21:06:53,368 INFO : Inserting APOL1_HPRR350088

04 Mar 2021 21:06:53,532 INFO : 35% Done

04 Mar 2021 21:06:54,646 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:06:54,693 INFO : Inserting CLU_HPRR5000007

04 Mar 2021 21:06:54,963 INFO : 36% Done

04 Mar 2021 21:06:56,302 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:06:56,307 INFO : Inserting HP_HPR_HPRR3530008

04 Mar 2021 21:06:56,592 INFO : 37% Done

04 Mar 2021 21:06:56,949 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:06:57,047 INFO : Inserting RBP4_HPRR350140

04 Mar 2021 21:06:57,752 INFO : 38% Done

04 Mar 2021 21:06:58,425 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:06:58,502 INFO : Inserting C1QC_HPRR280083

04 Mar 2021 21:06:59,324 INFO : 39% Done

04 Mar 2021 21:07:00,161 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:07:00,276 INFO : Inserting A1BG_HPRR3140513

04 Mar 2021 21:07:00,912 INFO : 40% Done

04 Mar 2021 21:07:01,490 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:07:01,532 INFO : Inserting ITIH2_HPRR3760404

04 Mar 2021 21:07:02,778 INFO : 41% Done

04 Mar 2021 21:07:03,065 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:07:03,143 INFO : Inserting C8A_HPRR2551164

04 Mar 2021 21:07:03,698 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:07:03,722 INFO : Inserting LRG1_HPRR350016

04 Mar 2021 21:07:04,284 INFO : 42% Done

04 Mar 2021 21:07:04,512 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:07:04,595 INFO : Inserting F2_HPRR3790031

04 Mar 2021 21:07:05,827 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:07:06,210 INFO : Inserting HRG_HPRR3730089

04 Mar 2021 21:07:06,473 INFO : 43% Done

04 Mar 2021 21:07:06,785 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:07:06,815 INFO : Inserting CFH_HPRR3720003

04 Mar 2021 21:07:07,951 INFO : 44% Done

04 Mar 2021 21:07:08,727 DEBUG: Total peptides inserted: 7

04 Mar 2021 21:07:08,795 INFO : Inserting FGG_HPRR1951754

04 Mar 2021 21:07:09,450 INFO : 45% Done

04 Mar 2021 21:07:10,981 INFO : 46% Done

04 Mar 2021 21:07:12,537 INFO : 47% Done

04 Mar 2021 21:07:12,700 DEBUG: Total peptides inserted: 16

04 Mar 2021 21:07:12,873 INFO : Inserting KLKB1_HPRR350009

04 Mar 2021 21:07:14,222 INFO : 48% Done

04 Mar 2021 21:07:15,219 DEBUG: Total peptides inserted: 9

04 Mar 2021 21:07:15,280 INFO : Inserting IGF2_HPRR380014

04 Mar 2021 21:07:15,677 INFO : 49% Done

04 Mar 2021 21:07:15,972 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:07:16,013 INFO : Inserting FBLN1_HPRR350141

04 Mar 2021 21:07:17,092 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:07:17,120 INFO : Inserting ITIH4_HPRR350047

04 Mar 2021 21:07:17,430 INFO : 50% Done

04 Mar 2021 21:07:18,387 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:07:18,398 INFO : Inserting SAA4_SAA2-SAA4_HPRR3640066

04 Mar 2021 21:07:18,537 INFO : 51% Done

04 Mar 2021 21:07:18,875 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:07:18,907 INFO : Inserting IGJ_HPRR350060

04 Mar 2021 21:07:19,804 INFO : 52% Done

04 Mar 2021 21:07:20,331 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:07:20,357 INFO : Inserting C9_HPRR5000059

04 Mar 2021 21:07:21,477 INFO : 53% Done

04 Mar 2021 21:07:22,431 DEBUG: Total peptides inserted: 8

04 Mar 2021 21:07:22,552 INFO : Inserting ECM1_HPRR1420079

04 Mar 2021 21:07:22,844 INFO : 54% Done

04 Mar 2021 21:07:23,421 DEBUG: Total peptides inserted: 7

04 Mar 2021 21:07:23,460 INFO : Inserting APOC4-APOC2_APOC2_HPRR3920348

04 Mar 2021 21:07:23,934 INFO : 55% Done

04 Mar 2021 21:07:24,215 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:07:24,219 INFO : Inserting PLG_HPRR2320064

04 Mar 2021 21:07:25,005 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:07:25,048 INFO : Inserting ATRN_HPRR1950215

04 Mar 2021 21:07:25,346 INFO : 56% Done

04 Mar 2021 21:07:26,423 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:07:26,427 INFO : Inserting HP_HPRR5000013

04 Mar 2021 21:07:26,869 INFO : 57% Done

04 Mar 2021 21:07:28,334 INFO : 58% Done

04 Mar 2021 21:07:28,811 DEBUG: Total peptides inserted: 12

04 Mar 2021 21:07:28,839 INFO : Inserting B2M_HPRR1520004

04 Mar 2021 21:07:29,152 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:07:29,159 INFO : 59% Done

04 Mar 2021 21:07:29,187 INFO : Inserting C1RL_HPRR5000342

04 Mar 2021 21:07:29,512 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:07:29,516 INFO : Inserting AHSG_HPRR350074

04 Mar 2021 21:07:30,587 INFO : 60% Done

04 Mar 2021 21:07:31,239 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:07:31,272 INFO : Inserting SERPINF2_HPRR350052

04 Mar 2021 21:07:32,252 INFO : 61% Done

04 Mar 2021 21:07:32,677 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:07:32,767 INFO : Inserting CST3_HPRR5000001

04 Mar 2021 21:07:33,025 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:07:33,053 INFO : Inserting AFM_HPRR670085

04 Mar 2021 21:07:33,499 INFO : 62% Done

04 Mar 2021 21:07:34,804 INFO : 63% Done

04 Mar 2021 21:07:36,209 DEBUG: Total peptides inserted: 14

04 Mar 2021 21:07:36,228 INFO : Inserting PGLYRP2_HPRR3280117

04 Mar 2021 21:07:36,549 INFO : 64% Done

04 Mar 2021 21:07:37,036 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:07:37,080 INFO : Inserting C1S_HPRR280086

04 Mar 2021 21:07:38,112 INFO : 65% Done

04 Mar 2021 21:07:39,705 INFO : 66% Done

04 Mar 2021 21:07:39,972 DEBUG: Total peptides inserted: 12

04 Mar 2021 21:07:40,027 INFO : Inserting SAA2-SAA4_SAA2_SAA1_HPRR4040317

04 Mar 2021 21:07:40,626 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:07:40,668 INFO : Inserting GPLD1_HPRR670137

04 Mar 2021 21:07:41,331 INFO : 67% Done

04 Mar 2021 21:07:42,569 DEBUG: Total peptides inserted: 7

04 Mar 2021 21:07:42,591 INFO : Inserting CD5L_HPRR3720238

04 Mar 2021 21:07:42,952 INFO : 68% Done

04 Mar 2021 21:07:43,831 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:07:43,882 INFO : Inserting AGT_HPRR350062

04 Mar 2021 21:07:44,654 INFO : 69% Done

04 Mar 2021 21:07:45,358 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:07:45,385 INFO : Inserting APOD_HPRR2760373

04 Mar 2021 21:07:45,994 INFO : 70% Done

04 Mar 2021 21:07:46,895 DEBUG: Total peptides inserted: 7

04 Mar 2021 21:07:46,919 INFO : Inserting C8G_HPRR3420319

04 Mar 2021 21:07:47,489 INFO : 71% Done

04 Mar 2021 21:07:48,080 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:07:48,085 INFO : Inserting HPX_HPRR4200150

04 Mar 2021 21:07:48,800 INFO : 72% Done

04 Mar 2021 21:07:48,912 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:07:48,964 INFO : Inserting C6_HPRR3500259

04 Mar 2021 21:07:49,931 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:07:49,987 INFO : Inserting CPN2_HPRR5000083

04 Mar 2021 21:07:50,398 INFO : 73% Done

04 Mar 2021 21:07:51,795 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:07:51,817 INFO : Inserting SERPING1_HPRR5000009

04 Mar 2021 21:07:51,827 INFO : 74% Done

04 Mar 2021 21:07:54,314 DEBUG: Total peptides inserted: 8

04 Mar 2021 21:07:54,338 INFO : Inserting SERPINA7_HPRR5000095

04 Mar 2021 21:07:55,263 INFO : 75% Done

04 Mar 2021 21:07:56,207 DEBUG: Total peptides inserted: 6

04 Mar 2021 21:07:56,253 INFO : Inserting PLTP_HPRR4160795

04 Mar 2021 21:07:56,578 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:07:56,610 INFO : Inserting PON1_HPRR5000060

04 Mar 2021 21:07:56,996 INFO : 76% Done

04 Mar 2021 21:07:57,868 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:07:57,894 INFO : Inserting C1QB_HPRR280081

04 Mar 2021 21:07:58,773 INFO : 77% Done

04 Mar 2021 21:07:59,686 DEBUG: Total peptides inserted: 8

04 Mar 2021 21:07:59,734 INFO : Inserting C4BPA_HPRR280110

04 Mar 2021 21:08:00,329 INFO : 78% Done

04 Mar 2021 21:08:01,958 INFO : 79% Done

04 Mar 2021 21:08:02,409 DEBUG: Total peptides inserted: 11

04 Mar 2021 21:08:02,459 INFO : Inserting MST1_HPRR2210179

04 Mar 2021 21:08:03,018 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:03,056 INFO : Inserting TGFBI_HPRR1770044

04 Mar 2021 21:08:03,106 INFO : 80% Done

04 Mar 2021 21:08:03,583 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:08:03,617 INFO : Inserting SERPIND1_HPRR3920037

04 Mar 2021 21:08:04,090 INFO : 81% Done

04 Mar 2021 21:08:04,673 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:08:04,737 INFO : Inserting APOE_HPRR4340126

04 Mar 2021 21:08:05,430 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:05,447 INFO : Inserting EFEMP1_HPRR3700121

04 Mar 2021 21:08:05,607 INFO : 82% Done

04 Mar 2021 21:08:06,068 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:06,105 INFO : Inserting FGA_HPRR3761208

04 Mar 2021 21:08:06,390 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:08:06,435 INFO : Inserting ITIH1_HPRR3140087

04 Mar 2021 21:08:07,020 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:08:07,075 INFO : Inserting C1R_HPRR280166

04 Mar 2021 21:08:07,084 INFO : 83% Done

04 Mar 2021 21:08:08,552 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:08:08,568 INFO : Inserting C8B_HPRR280100

04 Mar 2021 21:08:08,759 INFO : 84% Done

04 Mar 2021 21:08:10,114 INFO : 85% Done

04 Mar 2021 21:08:10,359 DEBUG: Total peptides inserted: 7

04 Mar 2021 21:08:10,391 INFO : Inserting F5_HPRR350051

04 Mar 2021 21:08:10,887 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:08:10,922 INFO : Inserting AC126283.2_HPRR5000063

04 Mar 2021 21:08:11,588 INFO : 86% Done

04 Mar 2021 21:08:11,916 DEBUG: Total peptides inserted: 8

04 Mar 2021 21:08:11,951 INFO : Inserting F13B_HPRR350069

04 Mar 2021 21:08:12,180 INFO : 87% Done

04 Mar 2021 21:08:12,325 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:08:12,359 INFO : Inserting CFD_HPRR5000033

04 Mar 2021 21:08:12,605 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:12,649 INFO : Inserting PROC_HPRR330194

04 Mar 2021 21:08:12,723 INFO : 88% Done

04 Mar 2021 21:08:12,879 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:12,923 INFO : Inserting SERPINA10_HPRR140864

04 Mar 2021 21:08:13,243 INFO : 89% Done

04 Mar 2021 21:08:13,329 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:08:13,375 INFO : Inserting APMAP_HPRR1820017

04 Mar 2021 21:08:13,765 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:08:13,785 INFO : Inserting CLEC3B_HPRR2760280

04 Mar 2021 21:08:13,903 INFO : 90% Done

04 Mar 2021 21:08:14,203 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:08:14,223 INFO : Inserting F12_HPRR4180801

04 Mar 2021 21:08:14,352 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:08:14,365 INFO : Inserting SELL_HPRR5000092

04 Mar 2021 21:08:14,379 INFO : 91% Done

04 Mar 2021 21:08:14,761 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:08:14,776 INFO : Inserting PTGDS_HPRR1320007

04 Mar 2021 21:08:14,936 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:08:14,952 INFO : Inserting CNDP1_HPRR1920086

04 Mar 2021 21:08:15,003 INFO : 92% Done

04 Mar 2021 21:08:15,350 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:08:15,368 INFO : Inserting CFHR5_HPRR3730570

04 Mar 2021 21:08:15,517 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:08:15,533 INFO : Inserting LPA_HPRR2190035

04 Mar 2021 21:08:15,541 INFO : 93% Done

04 Mar 2021 21:08:15,599 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:08:15,632 INFO : Inserting LYVE1_HPRR300181

04 Mar 2021 21:08:15,692 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:08:15,720 INFO : Inserting VASN_HPRR1920099

04 Mar 2021 21:08:15,899 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:08:15,899 INFO : Imported 100 peptide groups.

04 Mar 2021 21:08:15,914 INFO : Inserting MASP1_HPRR350147

04 Mar 2021 21:08:16,120 INFO : 94% Done

04 Mar 2021 21:08:16,281 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:08:16,313 INFO : Inserting VWF_HPRR330186

04 Mar 2021 21:08:16,524 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:16,558 INFO : Inserting ICAM2_HPRR5000058

04 Mar 2021 21:08:16,683 INFO : 95% Done

04 Mar 2021 21:08:16,894 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:08:16,916 INFO : Inserting LBP_HPRR350128

04 Mar 2021 21:08:17,056 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:08:17,081 INFO : Inserting APOB_HPRR3720310

04 Mar 2021 21:08:17,236 INFO : 96% Done

04 Mar 2021 21:08:17,319 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:17,342 INFO : Inserting IL1RAP_HPRR1060029

04 Mar 2021 21:08:17,645 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:08:17,682 INFO : Inserting KRT1_HPRR2350028

04 Mar 2021 21:08:17,767 INFO : 97% Done

04 Mar 2021 21:08:17,886 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:17,918 INFO : Inserting CD14_HPRR350015

04 Mar 2021 21:08:18,145 DEBUG: Total peptides inserted: 3

04 Mar 2021 21:08:18,185 INFO : Inserting SHBG_HPRR5000264

04 Mar 2021 21:08:18,378 INFO : 98% Done

04 Mar 2021 21:08:18,685 DEBUG: Total peptides inserted: 5

04 Mar 2021 21:08:18,685 INFO : None of the 114792 TransitionChromInfos in the file were imported because they exceed the limit of 100000

04 Mar 2021 21:17:11,468 INFO : Updated 16410 PrecursorChromInfos with transition chromatogram index information

04 Mar 2021 21:17:11,469 INFO : Done parsing Skyline document.

04 Mar 2021 21:17:11,471 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:17:11,729 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:17:14,545 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:17:15,141 INFO : Cleaning up temp tables

04 Mar 2021 21:17:15,556 INFO : Completed import of Skyline document from 20191205_Digestion_course_exp_2021-02-24_18-20-26.sky.zip

04 Mar 2021 21:17:15,564 INFO : 100% Done

04 Mar 2021 21:17:15,578 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102356/20191205_Digestion_course_exp_2021-02-24_18-20-26.sky.zip into the system

04 Mar 2021 21:17:15,578 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102353/20190214_vacuum_dried_LC-PRM_2021-02-24_17-39-33/20190214_vacuum_dried_LC-PRM.skyd into the system

04 Mar 2021 21:17:15,590 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102353/20190214_vacuum_dried_LC-PRM_2021-02-24_17-39-33/20190214_vacuum_dried_LC-PRM.skyd into the system

04 Mar 2021 21:17:15,590 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102353/20190214_vacuum_dried_LC-PRM_2021-02-24_17-39-33.sky.zip into the system

04 Mar 2021 21:17:15,593 INFO : Starting import from 20190214_vacuum_dried_LC-PRM_2021-02-24_17-39-33.sky.zip

04 Mar 2021 21:17:15,601 INFO : Starting to import Skyline document from 20190214_vacuum_dried_LC-PRM_2021-02-24_17-39-33.sky.zip

04 Mar 2021 21:17:15,635 INFO : Expanding 20190214_vacuum_dried_LC-PRM.skyd

04 Mar 2021 21:17:16,450 INFO : Expanding 20190214_vacuum_dried_LC-PRM.sky.view

04 Mar 2021 21:17:16,451 INFO : Expanding 20190214_vacuum_dried_LC-PRM.sky

04 Mar 2021 21:17:16,568 INFO : 8% Done

04 Mar 2021 21:17:16,757 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:17:16,760 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:17:18,631 INFO : Inserting QTag

04 Mar 2021 21:17:18,871 INFO : 98% Done

04 Mar 2021 21:17:27,542 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:17:27,544 INFO : Done parsing Skyline document.

04 Mar 2021 21:17:27,547 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:17:27,599 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:17:27,800 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:17:27,870 INFO : Cleaning up temp tables

04 Mar 2021 21:17:28,301 INFO : Completed import of Skyline document from 20190214_vacuum_dried_LC-PRM_2021-02-24_17-39-33.sky.zip

04 Mar 2021 21:17:28,308 INFO : 100% Done

04 Mar 2021 21:17:28,318 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102353/20190214_vacuum_dried_LC-PRM_2021-02-24_17-39-33.sky.zip into the system

04 Mar 2021 21:17:28,319 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102351/20200609_APO_SRM_2021-02-24_17-23-09/20200609_APO_SRM.skyd into the system

04 Mar 2021 21:17:28,320 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102351/20200609_APO_SRM_2021-02-24_17-23-09/20200609_APO_SRM.skyd into the system

04 Mar 2021 21:17:28,320 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102351/20200609_APO_SRM_2021-02-24_17-23-09.sky.zip into the system

04 Mar 2021 21:17:28,324 INFO : Starting import from 20200609_APO_SRM_2021-02-24_17-23-09.sky.zip

04 Mar 2021 21:17:28,332 INFO : Starting to import Skyline document from 20200609_APO_SRM_2021-02-24_17-23-09.sky.zip

04 Mar 2021 21:17:28,367 INFO : Expanding 20200609_APO_SRM.skyd

04 Mar 2021 21:17:28,541 INFO : Expanding 20200609_APO_SRM.sky.view

04 Mar 2021 21:17:28,542 INFO : Expanding 20200609_APO_SRM.sky

04 Mar 2021 21:17:28,547 INFO : Expanding 20200609_APO_SRM.skyl

04 Mar 2021 21:17:28,590 INFO : 4% Done

04 Mar 2021 21:17:28,929 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:17:28,934 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:17:29,062 INFO : Inserting APOA1

04 Mar 2021 21:17:29,076 INFO : 18% Done

04 Mar 2021 21:17:29,386 INFO : 28% Done

04 Mar 2021 21:17:29,620 DEBUG: Total peptides inserted: 2

04 Mar 2021 21:17:29,623 INFO : 29% Done

04 Mar 2021 21:17:29,697 INFO : Inserting APOA2

04 Mar 2021 21:17:29,701 INFO : 41% Done

04 Mar 2021 21:17:29,809 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:17:29,812 INFO : Inserting APOA4

04 Mar 2021 21:17:29,816 INFO : 53% Done

04 Mar 2021 21:17:29,918 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:17:29,929 INFO : Inserting APOB

04 Mar 2021 21:17:29,933 INFO : 64% Done

04 Mar 2021 21:17:30,060 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:17:30,076 INFO : Inserting APOC1

04 Mar 2021 21:17:30,081 INFO : 74% Done

04 Mar 2021 21:17:30,298 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:17:30,336 INFO : Inserting APOC4

04 Mar 2021 21:17:30,347 INFO : 86% Done

04 Mar 2021 21:17:30,616 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:17:30,637 INFO : 87% Done

04 Mar 2021 21:17:30,670 INFO : Inserting APOE

04 Mar 2021 21:17:30,680 INFO : 98% Done

04 Mar 2021 21:17:30,998 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:17:31,000 INFO : Done parsing Skyline document.

04 Mar 2021 21:17:36,170 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:17:36,185 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:17:36,216 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:17:36,227 INFO : Cleaning up temp tables

04 Mar 2021 21:17:36,524 INFO : Completed import of Skyline document from 20200609_APO_SRM_2021-02-24_17-23-09.sky.zip

04 Mar 2021 21:17:36,528 INFO : 100% Done

04 Mar 2021 21:17:36,533 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102351/20200609_APO_SRM_2021-02-24_17-23-09.sky.zip into the system

04 Mar 2021 21:17:36,533 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102350/20190214_not-vacuum_dried_LC-PRM_2021-02-24_17-00-26/20190214_not-vacuum_dried_LC-PRM.skyd into the system

04 Mar 2021 21:17:36,534 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102350/20190214_not-vacuum_dried_LC-PRM_2021-02-24_17-00-26/20190214_not-vacuum_dried_LC-PRM.skyd into the system

04 Mar 2021 21:17:36,534 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102350/20190214_not-vacuum_dried_LC-PRM_2021-02-24_17-00-26.sky.zip into the system

04 Mar 2021 21:17:36,535 INFO : Starting import from 20190214_not-vacuum_dried_LC-PRM_2021-02-24_17-00-26.sky.zip

04 Mar 2021 21:17:36,539 INFO : Starting to import Skyline document from 20190214_not-vacuum_dried_LC-PRM_2021-02-24_17-00-26.sky.zip

04 Mar 2021 21:17:36,575 INFO : Expanding 20190214_not-vacuum_dried_LC-PRM.skyd

04 Mar 2021 21:17:37,109 INFO : Expanding 20190214_not-vacuum_dried_LC-PRM.sky.view

04 Mar 2021 21:17:37,110 INFO : Expanding 20190214_not-vacuum_dried_LC-PRM.sky

04 Mar 2021 21:17:37,146 INFO : 9% Done

04 Mar 2021 21:17:37,208 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:17:37,209 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:17:37,804 INFO : Inserting QTag

04 Mar 2021 21:17:37,865 INFO : 98% Done

04 Mar 2021 21:17:42,089 DEBUG: Total peptides inserted: 1

04 Mar 2021 21:17:42,091 INFO : Done parsing Skyline document.

04 Mar 2021 21:17:42,094 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:17:42,124 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:17:42,174 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:17:42,191 INFO : Cleaning up temp tables

04 Mar 2021 21:17:42,527 INFO : Completed import of Skyline document from 20190214_not-vacuum_dried_LC-PRM_2021-02-24_17-00-26.sky.zip

04 Mar 2021 21:17:42,530 INFO : 100% Done

04 Mar 2021 21:17:42,546 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102350/20190214_not-vacuum_dried_LC-PRM_2021-02-24_17-00-26.sky.zip into the system

04 Mar 2021 21:17:42,546 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102349/20200207_LC-SRM_7_2021-02-24_16-28-13/20200207_LC-SRM_7.skyd into the system

04 Mar 2021 21:17:42,546 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102349/20200207_LC-SRM_7_2021-02-24_16-28-13/20200207_LC-SRM_7.skyd into the system

04 Mar 2021 21:17:42,546 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102349/20200207_LC-SRM_7_2021-02-24_16-28-13.sky.zip into the system

04 Mar 2021 21:17:42,548 INFO : Starting import from 20200207_LC-SRM_7_2021-02-24_16-28-13.sky.zip

04 Mar 2021 21:17:42,551 INFO : Starting to import Skyline document from 20200207_LC-SRM_7_2021-02-24_16-28-13.sky.zip

04 Mar 2021 21:17:42,581 INFO : Expanding 20200207_LC-SRM_7.skyd

04 Mar 2021 21:17:43,043 INFO : Expanding 20200207_LC-SRM_7.sky.view

04 Mar 2021 21:17:43,044 INFO : Expanding 20200207_LC-SRM_7.sky

04 Mar 2021 21:17:43,055 INFO : Expanding 20200207_LC-SRM_7.skyl

04 Mar 2021 21:17:43,104 INFO : 6% Done

04 Mar 2021 21:17:43,182 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:17:43,185 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:17:43,517 INFO : Inserting QTag

04 Mar 2021 21:17:43,536 INFO : 30% Done

04 Mar 2021 21:17:44,499 INFO : 53% Done

04 Mar 2021 21:17:45,363 INFO : 75% Done

04 Mar 2021 21:17:46,361 INFO : 98% Done

04 Mar 2021 21:17:47,206 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:17:47,208 INFO : Done parsing Skyline document.

04 Mar 2021 21:17:51,861 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:17:51,900 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:17:51,966 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:17:51,991 INFO : Cleaning up temp tables

04 Mar 2021 21:17:52,328 INFO : Completed import of Skyline document from 20200207_LC-SRM_7_2021-02-24_16-28-13.sky.zip

04 Mar 2021 21:17:52,332 INFO : 100% Done

04 Mar 2021 21:17:52,338 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102349/20200207_LC-SRM_7_2021-02-24_16-28-13.sky.zip into the system

04 Mar 2021 21:17:52,338 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102348/20200207_LC-SRM_6_2021-02-24_16-26-59/20200207_LC-SRM_6.skyd into the system

04 Mar 2021 21:17:52,339 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102348/20200207_LC-SRM_6_2021-02-24_16-26-59/20200207_LC-SRM_6.skyd into the system

04 Mar 2021 21:17:52,339 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102348/20200207_LC-SRM_6_2021-02-24_16-26-59.sky.zip into the system

04 Mar 2021 21:17:52,342 INFO : Starting import from 20200207_LC-SRM_6_2021-02-24_16-26-59.sky.zip

04 Mar 2021 21:17:52,345 INFO : Starting to import Skyline document from 20200207_LC-SRM_6_2021-02-24_16-26-59.sky.zip

04 Mar 2021 21:17:52,379 INFO : Expanding 20200207_LC-SRM_6.skyd

04 Mar 2021 21:17:52,600 INFO : Expanding 20200207_LC-SRM_6.sky.view

04 Mar 2021 21:17:52,600 INFO : Expanding 20200207_LC-SRM_6.sky

04 Mar 2021 21:17:52,605 INFO : Expanding 20200207_LC-SRM_6.skyl

04 Mar 2021 21:17:52,628 INFO : 6% Done

04 Mar 2021 21:17:52,668 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:17:52,670 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:17:52,836 INFO : Inserting QTag

04 Mar 2021 21:17:52,847 INFO : 30% Done

04 Mar 2021 21:17:53,239 INFO : 53% Done

04 Mar 2021 21:17:53,732 INFO : 75% Done

04 Mar 2021 21:17:54,214 INFO : 98% Done

04 Mar 2021 21:17:54,693 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:17:54,695 INFO : Done parsing Skyline document.

04 Mar 2021 21:17:59,366 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:17:59,387 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:17:59,459 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:17:59,486 INFO : Cleaning up temp tables

04 Mar 2021 21:17:59,858 INFO : Completed import of Skyline document from 20200207_LC-SRM_6_2021-02-24_16-26-59.sky.zip

04 Mar 2021 21:17:59,863 INFO : 100% Done

04 Mar 2021 21:17:59,873 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102348/20200207_LC-SRM_6_2021-02-24_16-26-59.sky.zip into the system

04 Mar 2021 21:17:59,873 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102347/20200207_LC-SRM_5_2021-02-24_16-25-42/20200207_LC-SRM_5.skyd into the system

04 Mar 2021 21:17:59,873 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102347/20200207_LC-SRM_5_2021-02-24_16-25-42/20200207_LC-SRM_5.skyd into the system

04 Mar 2021 21:17:59,874 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102347/20200207_LC-SRM_5_2021-02-24_16-25-42.sky.zip into the system

04 Mar 2021 21:17:59,876 INFO : Starting import from 20200207_LC-SRM_5_2021-02-24_16-25-42.sky.zip

04 Mar 2021 21:17:59,881 INFO : Starting to import Skyline document from 20200207_LC-SRM_5_2021-02-24_16-25-42.sky.zip

04 Mar 2021 21:17:59,901 INFO : Expanding 20200207_LC-SRM_5.skyd

04 Mar 2021 21:18:00,148 INFO : Expanding 20200207_LC-SRM_5.sky.view

04 Mar 2021 21:18:00,149 INFO : Expanding 20200207_LC-SRM_5.sky

04 Mar 2021 21:18:00,153 INFO : Expanding 20200207_LC-SRM_5.skyl

04 Mar 2021 21:18:00,181 INFO : 6% Done

04 Mar 2021 21:18:00,221 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:18:00,223 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:18:00,585 INFO : Inserting QTag

04 Mar 2021 21:18:00,600 INFO : 30% Done

04 Mar 2021 21:18:01,201 INFO : 53% Done

04 Mar 2021 21:18:01,548 INFO : 75% Done

04 Mar 2021 21:18:02,190 INFO : 98% Done

04 Mar 2021 21:18:02,890 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:18:02,891 INFO : Done parsing Skyline document.

04 Mar 2021 21:18:07,461 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:18:07,549 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:18:07,621 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:18:07,645 INFO : Cleaning up temp tables

04 Mar 2021 21:18:07,947 INFO : Completed import of Skyline document from 20200207_LC-SRM_5_2021-02-24_16-25-42.sky.zip

04 Mar 2021 21:18:07,951 INFO : 100% Done

04 Mar 2021 21:18:07,957 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102347/20200207_LC-SRM_5_2021-02-24_16-25-42.sky.zip into the system

04 Mar 2021 21:18:07,957 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102346/20200207_LC-SRM_4_2021-02-24_16-23-44/20200207_LC-SRM_4.skyd into the system

04 Mar 2021 21:18:07,958 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102346/20200207_LC-SRM_4_2021-02-24_16-23-44/20200207_LC-SRM_4.skyd into the system

04 Mar 2021 21:18:07,958 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102346/20200207_LC-SRM_4_2021-02-24_16-23-44.sky.zip into the system

04 Mar 2021 21:18:07,960 INFO : Starting import from 20200207_LC-SRM_4_2021-02-24_16-23-44.sky.zip

04 Mar 2021 21:18:07,963 INFO : Starting to import Skyline document from 20200207_LC-SRM_4_2021-02-24_16-23-44.sky.zip

04 Mar 2021 21:18:08,019 INFO : Expanding 20200207_LC-SRM_4.skyd

04 Mar 2021 21:18:09,456 INFO : Expanding 20200207_LC-SRM_4.sky.view

04 Mar 2021 21:18:09,457 INFO : Expanding 20200207_LC-SRM_4.sky

04 Mar 2021 21:18:09,516 INFO : Expanding 20200207_LC-SRM_4.skyl

04 Mar 2021 21:18:09,589 INFO : 6% Done

04 Mar 2021 21:18:10,131 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:18:10,139 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:18:10,995 INFO : Inserting QTag

04 Mar 2021 21:18:11,031 INFO : 29% Done

04 Mar 2021 21:18:14,069 INFO : 53% Done

04 Mar 2021 21:18:18,405 INFO : 75% Done

04 Mar 2021 21:18:23,060 INFO : 98% Done

04 Mar 2021 21:18:27,309 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:18:27,311 INFO : Done parsing Skyline document.

04 Mar 2021 21:18:31,941 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:18:32,063 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:18:32,678 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:18:32,955 INFO : Cleaning up temp tables

04 Mar 2021 21:18:33,431 INFO : Completed import of Skyline document from 20200207_LC-SRM_4_2021-02-24_16-23-44.sky.zip

04 Mar 2021 21:18:33,439 INFO : 100% Done

04 Mar 2021 21:18:33,449 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102346/20200207_LC-SRM_4_2021-02-24_16-23-44.sky.zip into the system

04 Mar 2021 21:18:33,449 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102345/20200207_LC-SRM_3_2021-02-24_16-22-18/20200207_LC-SRM_3.skyd into the system

04 Mar 2021 21:18:33,450 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102345/20200207_LC-SRM_3_2021-02-24_16-22-18/20200207_LC-SRM_3.skyd into the system

04 Mar 2021 21:18:33,450 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102345/20200207_LC-SRM_3_2021-02-24_16-22-18.sky.zip into the system

04 Mar 2021 21:18:33,453 INFO : Starting import from 20200207_LC-SRM_3_2021-02-24_16-22-18.sky.zip

04 Mar 2021 21:18:33,459 INFO : Starting to import Skyline document from 20200207_LC-SRM_3_2021-02-24_16-22-18.sky.zip

04 Mar 2021 21:18:33,504 INFO : Expanding 20200207_LC-SRM_3.skyd

04 Mar 2021 21:18:34,154 INFO : Expanding 20200207_LC-SRM_3.sky.view

04 Mar 2021 21:18:34,155 INFO : Expanding 20200207_LC-SRM_3.sky

04 Mar 2021 21:18:34,165 INFO : Expanding 20200207_LC-SRM_3.skyl

04 Mar 2021 21:18:34,209 INFO : 6% Done

04 Mar 2021 21:18:34,298 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:18:34,301 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:18:34,650 INFO : Inserting QTag

04 Mar 2021 21:18:34,672 INFO : 30% Done

04 Mar 2021 21:18:35,354 INFO : 53% Done

04 Mar 2021 21:18:36,102 INFO : 75% Done

04 Mar 2021 21:18:36,939 INFO : 98% Done

04 Mar 2021 21:18:37,779 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:18:37,781 INFO : Done parsing Skyline document.

04 Mar 2021 21:18:42,457 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:18:42,502 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:18:42,660 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:18:42,715 INFO : Cleaning up temp tables

04 Mar 2021 21:18:43,097 INFO : Completed import of Skyline document from 20200207_LC-SRM_3_2021-02-24_16-22-18.sky.zip

04 Mar 2021 21:18:43,104 INFO : 100% Done

04 Mar 2021 21:18:43,115 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102345/20200207_LC-SRM_3_2021-02-24_16-22-18.sky.zip into the system

04 Mar 2021 21:18:43,116 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102344/20200207_LC-SRM_2_2021-02-24_16-20-52/20200207_LC-SRM_2.skyd into the system

04 Mar 2021 21:18:43,117 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102344/20200207_LC-SRM_2_2021-02-24_16-20-52/20200207_LC-SRM_2.skyd into the system

04 Mar 2021 21:18:43,117 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102344/20200207_LC-SRM_2_2021-02-24_16-20-52.sky.zip into the system

04 Mar 2021 21:18:43,121 INFO : Starting import from 20200207_LC-SRM_2_2021-02-24_16-20-52.sky.zip

04 Mar 2021 21:18:43,128 INFO : Starting to import Skyline document from 20200207_LC-SRM_2_2021-02-24_16-20-52.sky.zip

04 Mar 2021 21:18:43,137 INFO : Expanding 20200207_LC-SRM_2.skyd

04 Mar 2021 21:18:43,645 INFO : Expanding 20200207_LC-SRM_2.sky.view

04 Mar 2021 21:18:43,646 INFO : Expanding 20200207_LC-SRM_2.sky

04 Mar 2021 21:18:43,657 INFO : Expanding 20200207_LC-SRM_2.skyl

04 Mar 2021 21:18:43,706 INFO : 6% Done

04 Mar 2021 21:18:43,808 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:18:43,812 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:18:44,278 INFO : Inserting QTag

04 Mar 2021 21:18:44,303 INFO : 30% Done

04 Mar 2021 21:18:45,111 INFO : 53% Done

04 Mar 2021 21:18:45,599 INFO : 75% Done

04 Mar 2021 21:18:46,116 INFO : 98% Done

04 Mar 2021 21:18:46,926 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:18:46,928 INFO : Done parsing Skyline document.

04 Mar 2021 21:18:51,640 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:18:51,687 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:18:51,755 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:18:51,779 INFO : Cleaning up temp tables

04 Mar 2021 21:18:52,060 INFO : Completed import of Skyline document from 20200207_LC-SRM_2_2021-02-24_16-20-52.sky.zip

04 Mar 2021 21:18:52,064 INFO : 100% Done

04 Mar 2021 21:18:52,071 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102344/20200207_LC-SRM_2_2021-02-24_16-20-52.sky.zip into the system

04 Mar 2021 21:18:52,071 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102343/20200207_LC-SRM_1_2021-02-24_16-19-12/20200207_LC-SRM_1.skyd into the system

04 Mar 2021 21:18:52,071 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102343/20200207_LC-SRM_1_2021-02-24_16-19-12/20200207_LC-SRM_1.skyd into the system

04 Mar 2021 21:18:52,071 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102343/20200207_LC-SRM_1_2021-02-24_16-19-12.sky.zip into the system

04 Mar 2021 21:18:52,073 INFO : Starting import from 20200207_LC-SRM_1_2021-02-24_16-19-12.sky.zip

04 Mar 2021 21:18:52,076 INFO : Starting to import Skyline document from 20200207_LC-SRM_1_2021-02-24_16-19-12.sky.zip

04 Mar 2021 21:18:52,097 INFO : Expanding 20200207_LC-SRM_1.skyd

04 Mar 2021 21:18:52,611 INFO : Expanding 20200207_LC-SRM_1.sky.view

04 Mar 2021 21:18:52,612 INFO : Expanding 20200207_LC-SRM_1.sky

04 Mar 2021 21:18:52,622 INFO : Expanding 20200207_LC-SRM_1.skyl

04 Mar 2021 21:18:52,696 INFO : 6% Done

04 Mar 2021 21:18:52,781 DEBUG: Starting to load chromatogram headers

04 Mar 2021 21:18:52,784 DEBUG: Done loading chromatogram headers

04 Mar 2021 21:18:53,220 INFO : Inserting QTag

04 Mar 2021 21:18:53,244 INFO : 30% Done

04 Mar 2021 21:18:54,128 INFO : 53% Done

04 Mar 2021 21:18:54,964 INFO : 75% Done

04 Mar 2021 21:18:55,818 INFO : 98% Done

04 Mar 2021 21:18:56,669 DEBUG: Total peptides inserted: 4

04 Mar 2021 21:18:56,671 INFO : Done parsing Skyline document.

04 Mar 2021 21:19:01,729 INFO : Creating and populating temp tables for Proportion values

04 Mar 2021 21:19:01,773 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2021 21:19:01,946 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2021 21:19:02,003 INFO : Cleaning up temp tables

04 Mar 2021 21:19:02,464 INFO : Completed import of Skyline document from 20200207_LC-SRM_1_2021-02-24_16-19-12.sky.zip

04 Mar 2021 21:19:02,473 INFO : 100% Done

04 Mar 2021 21:19:02,486 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102343/20200207_LC-SRM_1_2021-02-24_16-19-12.sky.zip into the system

04 Mar 2021 21:19:02,641 INFO : Done importing xar

04 Mar 2021 21:19:02,647 INFO : Loading pages and webpart properties

04 Mar 2021 21:19:02,969 INFO : Done importing pages and webpart properties

04 Mar 2021 21:19:02,969 INFO : 

04 Mar 2021 21:19:02,969 INFO : Experiment import completed successfully.

04 Mar 2021 21:19:02,970 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

04 Mar 2021 21:21:34,460 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

04 Mar 2021 21:21:34,460 INFO : 

04 Mar 2021 21:21:34,461 INFO : Finishing up experiment copy.

04 Mar 2021 21:21:34,463 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

04 Mar 2021 21:21:34,467 INFO : Assigning a ProteomeXchange ID.

04 Mar 2021 21:21:35,823 INFO : Updating access URL to point to the new copy of the data.

04 Mar 2021 21:21:36,117 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

04 Mar 2021 21:21:36,256 INFO : Removing copy permissions given to journal.

04 Mar 2021 21:21:36,316 INFO : Adding read permissions to all users that are folder admins in the source container.

04 Mar 2021 21:21:36,333 INFO : Setting the TargetedMS folder type to 'Experimental Data'

04 Mar 2021 21:21:36,336 INFO : Updating the 'Raw Data' tab configuration

04 Mar 2021 21:21:36,340 INFO : Updating dataFileUrls for run 20200207_LC-SRM_1_2021-02-24_16-19-12.sky.zip; targetedms run ID 105397

04 Mar 2021 21:21:36,340 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,340 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102343/20200207_LC-SRM_1_2021-02-24_16-19-12.sky.zip

04 Mar 2021 21:21:36,340 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_1_2021-02-24_16-19-12.sky.zip

04 Mar 2021 21:21:36,344 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,344 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102343/20200207_LC-SRM_1_2021-02-24_16-19-12/20200207_LC-SRM_1.skyd

04 Mar 2021 21:21:36,344 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_1_2021-02-24_16-19-12/20200207_LC-SRM_1.skyd

04 Mar 2021 21:21:36,349 INFO : Updating dataFileUrls for run 20200207_LC-SRM_2_2021-02-24_16-20-52.sky.zip; targetedms run ID 105396

04 Mar 2021 21:21:36,349 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,349 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102344/20200207_LC-SRM_2_2021-02-24_16-20-52.sky.zip

04 Mar 2021 21:21:36,349 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_2_2021-02-24_16-20-52.sky.zip

04 Mar 2021 21:21:36,352 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,352 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102344/20200207_LC-SRM_2_2021-02-24_16-20-52/20200207_LC-SRM_2.skyd

04 Mar 2021 21:21:36,352 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_2_2021-02-24_16-20-52/20200207_LC-SRM_2.skyd

04 Mar 2021 21:21:36,356 INFO : Updating dataFileUrls for run 20200207_LC-SRM_3_2021-02-24_16-22-18.sky.zip; targetedms run ID 105395

04 Mar 2021 21:21:36,357 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,357 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102345/20200207_LC-SRM_3_2021-02-24_16-22-18/20200207_LC-SRM_3.skyd

04 Mar 2021 21:21:36,357 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_3_2021-02-24_16-22-18/20200207_LC-SRM_3.skyd

04 Mar 2021 21:21:36,359 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,359 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102345/20200207_LC-SRM_3_2021-02-24_16-22-18.sky.zip

04 Mar 2021 21:21:36,359 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_3_2021-02-24_16-22-18.sky.zip

04 Mar 2021 21:21:36,407 INFO : Updating dataFileUrls for run 20200207_LC-SRM_4_2021-02-24_16-23-44.sky.zip; targetedms run ID 105394

04 Mar 2021 21:21:36,408 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,408 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102346/20200207_LC-SRM_4_2021-02-24_16-23-44.sky.zip

04 Mar 2021 21:21:36,408 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_4_2021-02-24_16-23-44.sky.zip

04 Mar 2021 21:21:36,411 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,411 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102346/20200207_LC-SRM_4_2021-02-24_16-23-44/20200207_LC-SRM_4.skyd

04 Mar 2021 21:21:36,411 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_4_2021-02-24_16-23-44/20200207_LC-SRM_4.skyd

04 Mar 2021 21:21:36,415 INFO : Updating dataFileUrls for run 20200207_LC-SRM_5_2021-02-24_16-25-42.sky.zip; targetedms run ID 105393

04 Mar 2021 21:21:36,415 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,416 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102347/20200207_LC-SRM_5_2021-02-24_16-25-42.sky.zip

04 Mar 2021 21:21:36,416 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_5_2021-02-24_16-25-42.sky.zip

04 Mar 2021 21:21:36,419 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,419 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102347/20200207_LC-SRM_5_2021-02-24_16-25-42/20200207_LC-SRM_5.skyd

04 Mar 2021 21:21:36,419 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_5_2021-02-24_16-25-42/20200207_LC-SRM_5.skyd

04 Mar 2021 21:21:36,423 INFO : Updating dataFileUrls for run 20200207_LC-SRM_6_2021-02-24_16-26-59.sky.zip; targetedms run ID 105392

04 Mar 2021 21:21:36,423 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,423 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102348/20200207_LC-SRM_6_2021-02-24_16-26-59.sky.zip

04 Mar 2021 21:21:36,423 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_6_2021-02-24_16-26-59.sky.zip

04 Mar 2021 21:21:36,426 INFO : Updating dataFileUrl...

04 Mar 2021 21:21:36,426 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability_907a6988-5f96-1039-9674-3013bb9b91fd/_temp__2021-03-04_20-12-36/export/xar/experiments_and_runs.xar.exploded/Run102348/20200207_LC-SRM_6_2021-02-24_16-26-59/20200207_LC-SRM_6.skyd

04 Mar 2021 21:21:36,426 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20SIS-PrESTs%20Stability/@files/20200207_LC-SRM_6_2021-02-24_16-26-59/20200207_LC-SRM_6.skyd

04 Mar 2021 21:21:36,448 INFO : Updating dataFileUrls for run 20200207_LC-SRM_7_2021-02-24_16-28-13.sky.zip; targetedms run ID 105391

04 Mar 2021 21:21:36,448 INFO : Updating dataFileUrl...

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04 Mar 2021 21:21:36,483 INFO : Updating dataFileUrls for run 20210219_Deamidation_Prosit_lib_2021-02-26_16-16-58.sky.zip; targetedms run ID 105386

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04 Mar 2021 21:21:36,489 INFO : Creating a reviewer account.

04 Mar 2021 21:21:37,488 INFO : Created reviewer with email: User panorama+reviewer8@proteinms.net

04 Mar 2021 21:21:37,511 INFO : Hiding the Data Pipeline tab.

04 Mar 2021 21:21:38,741 INFO : Emailing submitter.

04 Mar 2021 21:21:40,428 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'