Skyline document import - 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip: /Panorama Public/2021/NCSU Baker Lab

Skyline document import - 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

NCSU Baker Lab - Lipid Libraries

Job Status

Created:

2021-02-26 16:23:13

Modified:

2021-09-29 08:31:59

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Skyline document import - 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

File Path:

/data/labkey/files/Panorama Public/2021/NCSU Baker Lab - Lipid Libraries/@files/OriginalFiles/2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky_2021-02-26_16-23-12.log

Files:

2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky_2021-02-26_16-23-12.log

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Log File

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26 Feb 2021 16:23:13,213 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

26 Feb 2021 16:23:13,220 INFO : Starting to import Skyline document from 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

26 Feb 2021 16:23:13,228 INFO : Expanding Negative_Plasma_Lipid_iRT.irtdb

26 Feb 2021 16:23:13,243 INFO : Expanding Plasma_Lipids_Negative.blib

26 Feb 2021 16:23:13,258 INFO : Expanding 2_Plasma_Lipid_Library_Negative.sky.view

26 Feb 2021 16:23:13,273 INFO : Expanding 2_Plasma_Lipid_Library_Negative.sky

26 Feb 2021 16:23:13,295 INFO : Expanding 2_Plasma_Lipid_Library_Negative.skyl

26 Feb 2021 16:23:13,365 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

26 Feb 2021 16:23:13,376 INFO : 2% Done

26 Feb 2021 16:23:13,392 WARN : Unable to find file /data/labkey/files/Panorama Public/2021/NCSU Baker Lab - Lipid Libraries/@files/2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37/2_Plasma_Lipid_Library_Negative.skyd, unable to import chromatograms

26 Feb 2021 16:23:13,670 INFO : Inserting Cer (Ceramide)

26 Feb 2021 16:23:13,732 INFO : 3% Done

26 Feb 2021 16:23:13,788 INFO : 4% Done

26 Feb 2021 16:23:13,843 INFO : 5% Done

26 Feb 2021 16:23:13,914 INFO : 6% Done

26 Feb 2021 16:23:13,951 INFO : 7% Done

26 Feb 2021 16:23:14,005 INFO : 8% Done

26 Feb 2021 16:23:14,037 INFO : 9% Done

26 Feb 2021 16:23:14,068 INFO : 10% Done

26 Feb 2021 16:23:14,100 INFO : 11% Done

26 Feb 2021 16:23:14,160 INFO : 12% Done

26 Feb 2021 16:23:14,192 INFO : 13% Done

26 Feb 2021 16:23:14,227 INFO : 14% Done

26 Feb 2021 16:23:14,280 DEBUG: Total molecules inserted: 16

26 Feb 2021 16:23:14,280 INFO : Inserting FA (Fatty acyl)

26 Feb 2021 16:23:14,291 INFO : 15% Done

26 Feb 2021 16:23:14,317 INFO : 16% Done

26 Feb 2021 16:23:14,339 INFO : 17% Done

26 Feb 2021 16:23:14,390 INFO : 18% Done

26 Feb 2021 16:23:14,450 INFO : 19% Done

26 Feb 2021 16:23:14,506 INFO : 20% Done

26 Feb 2021 16:23:14,568 DEBUG: Inserted 50 molecules

26 Feb 2021 16:23:14,583 DEBUG: Total molecules inserted: 51

26 Feb 2021 16:23:14,584 INFO : Inserting GM3 (Ganglioside)

26 Feb 2021 16:23:14,606 INFO : 21% Done

26 Feb 2021 16:23:14,664 DEBUG: Total molecules inserted: 4

26 Feb 2021 16:23:14,665 INFO : Inserting HexCer (Glc/Glu Glycosphingolipid)

26 Feb 2021 16:23:14,673 INFO : 23% Done

26 Feb 2021 16:23:14,786 INFO : 24% Done

26 Feb 2021 16:23:14,843 INFO : 25% Done

26 Feb 2021 16:23:14,938 INFO : 26% Done

26 Feb 2021 16:23:15,057 INFO : 27% Done

26 Feb 2021 16:23:15,131 INFO : 29% Done

26 Feb 2021 16:23:15,190 DEBUG: Total molecules inserted: 8

26 Feb 2021 16:23:15,191 INFO : Inserting LPC (Lyso phosphatidylcholine)

26 Feb 2021 16:23:15,269 INFO : 30% Done

26 Feb 2021 16:23:15,312 INFO : 31% Done

26 Feb 2021 16:23:15,368 INFO : 32% Done

26 Feb 2021 16:23:15,453 INFO : 33% Done

26 Feb 2021 16:23:15,500 INFO : 34% Done

26 Feb 2021 16:23:15,540 DEBUG: Total molecules inserted: 26

26 Feb 2021 16:23:15,542 INFO : Inserting LPE (Lyso phosphatidylethanolamine)

26 Feb 2021 16:23:15,564 INFO : 35% Done

26 Feb 2021 16:23:15,651 INFO : 36% Done

26 Feb 2021 16:23:15,704 INFO : 37% Done

26 Feb 2021 16:23:15,731 DEBUG: Total molecules inserted: 12

26 Feb 2021 16:23:15,732 INFO : Inserting PA (Phosphatidic acid)

26 Feb 2021 16:23:15,738 INFO : 38% Done

26 Feb 2021 16:23:15,758 DEBUG: Total molecules inserted: 1

26 Feb 2021 16:23:15,759 INFO : Inserting PC (Phosphatidylcholine)

26 Feb 2021 16:23:15,837 INFO : 39% Done

26 Feb 2021 16:23:15,898 INFO : 40% Done

26 Feb 2021 16:23:15,940 INFO : 41% Done

26 Feb 2021 16:23:16,027 INFO : 42% Done

26 Feb 2021 16:23:16,080 INFO : 43% Done

26 Feb 2021 16:23:16,143 INFO : 44% Done

26 Feb 2021 16:23:16,234 INFO : 45% Done

26 Feb 2021 16:23:16,285 INFO : 46% Done

26 Feb 2021 16:23:16,331 INFO : 47% Done

26 Feb 2021 16:23:16,421 INFO : 48% Done

26 Feb 2021 16:23:16,467 INFO : 49% Done

26 Feb 2021 16:23:16,529 INFO : 50% Done

26 Feb 2021 16:23:16,579 INFO : 51% Done

26 Feb 2021 16:23:16,682 INFO : 52% Done

26 Feb 2021 16:23:16,717 INFO : 53% Done

26 Feb 2021 16:23:16,762 INFO : 54% Done

26 Feb 2021 16:23:16,865 INFO : 55% Done

26 Feb 2021 16:23:16,866 DEBUG: Inserted 50 molecules

26 Feb 2021 16:23:16,911 INFO : 56% Done

26 Feb 2021 16:23:16,953 INFO : 57% Done

26 Feb 2021 16:23:16,972 DEBUG: Total molecules inserted: 54

26 Feb 2021 16:23:16,973 INFO : Inserting PC(O/P-) (Akyl/alkenyl ether phosphatidylcholine)

26 Feb 2021 16:23:17,037 INFO : 58% Done

26 Feb 2021 16:23:17,076 INFO : 59% Done

26 Feb 2021 16:23:17,118 INFO : 60% Done

26 Feb 2021 16:23:17,210 INFO : 61% Done

26 Feb 2021 16:23:17,256 INFO : 62% Done

26 Feb 2021 16:23:17,296 INFO : 63% Done

26 Feb 2021 16:23:17,385 INFO : 64% Done

26 Feb 2021 16:23:17,401 DEBUG: Total molecules inserted: 22

26 Feb 2021 16:23:17,402 INFO : Inserting PE (Phosphatidylethanolamine)

26 Feb 2021 16:23:17,440 INFO : 65% Done

26 Feb 2021 16:23:17,483 INFO : 66% Done

26 Feb 2021 16:23:17,561 INFO : 67% Done

26 Feb 2021 16:23:17,612 INFO : 68% Done

26 Feb 2021 16:23:17,652 INFO : 69% Done

26 Feb 2021 16:23:17,743 INFO : 70% Done

26 Feb 2021 16:23:17,795 INFO : 71% Done

26 Feb 2021 16:23:17,840 INFO : 72% Done

26 Feb 2021 16:23:17,931 INFO : 73% Done

26 Feb 2021 16:23:17,991 INFO : 74% Done

26 Feb 2021 16:23:18,160 INFO : 75% Done

26 Feb 2021 16:23:18,205 INFO : 76% Done

26 Feb 2021 16:23:18,249 INFO : 77% Done

26 Feb 2021 16:23:18,269 DEBUG: Total molecules inserted: 44

26 Feb 2021 16:23:18,270 INFO : Inserting PE(O/P-) (Alkyl/alkenyl ether phosphatidylethanolamine)

26 Feb 2021 16:23:18,293 INFO : 78% Done

26 Feb 2021 16:23:18,384 INFO : 79% Done

26 Feb 2021 16:23:18,439 INFO : 80% Done

26 Feb 2021 16:23:18,489 INFO : 81% Done

26 Feb 2021 16:23:18,581 INFO : 82% Done

26 Feb 2021 16:23:18,621 INFO : 83% Done

26 Feb 2021 16:23:18,679 INFO : 84% Done

26 Feb 2021 16:23:18,764 INFO : 85% Done

26 Feb 2021 16:23:18,810 DEBUG: Total molecules inserted: 30

26 Feb 2021 16:23:18,811 INFO : Inserting PG (Phosphatidylglycerol)

26 Feb 2021 16:23:18,825 INFO : 86% Done

26 Feb 2021 16:23:18,876 DEBUG: Total molecules inserted: 3

26 Feb 2021 16:23:18,882 INFO : 87% Done

26 Feb 2021 16:23:18,883 INFO : Inserting PI (Phosphatidylinositol)

26 Feb 2021 16:23:18,979 INFO : 88% Done

26 Feb 2021 16:23:19,026 INFO : 89% Done

26 Feb 2021 16:23:19,073 INFO : 90% Done

26 Feb 2021 16:23:19,158 INFO : 91% Done

26 Feb 2021 16:23:19,214 INFO : 92% Done

26 Feb 2021 16:23:19,270 INFO : 93% Done

26 Feb 2021 16:23:19,338 DEBUG: Total molecules inserted: 19

26 Feb 2021 16:23:19,339 INFO : Inserting SM (Sphingomyelin)

26 Feb 2021 16:23:19,381 INFO : 94% Done

26 Feb 2021 16:23:19,427 INFO : 95% Done

26 Feb 2021 16:23:19,476 INFO : 96% Done

26 Feb 2021 16:23:19,574 INFO : 97% Done

26 Feb 2021 16:23:19,619 INFO : 98% Done

26 Feb 2021 16:23:19,675 DEBUG: Total molecules inserted: 16

26 Feb 2021 16:23:19,679 INFO : Done parsing Skyline document.

26 Feb 2021 16:23:19,707 INFO : Creating and populating temp tables for Proportion values

26 Feb 2021 16:23:19,757 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 Feb 2021 16:23:19,760 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 Feb 2021 16:23:19,763 INFO : Cleaning up temp tables

26 Feb 2021 16:23:19,767 INFO : Completed import of Skyline document from 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

26 Feb 2021 16:23:19,774 INFO : 100% Done

26 Feb 2021 16:23:19,853 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'