Copying experiment: Utilizing Skyline to Analyze Lipidomics Data Containing Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry Dimensions: /Panorama Public/2021/NCSU Baker Lab

Copying experiment: Utilizing Skyline to Analyze Lipidomics Data Containing Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry Dimensions

NCSU Baker Lab - Lipid Libraries

Job Status

Created:

2021-02-26 16:19:16

Modified:

2021-09-29 08:31:59

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: Utilizing Skyline to Analyze Lipidomics Data Containing Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry Dimensions

File Path:

/data/labkey/files/Panorama Public/2021/NCSU Baker Lab - Lipid Libraries/@files/Experiment_1200.log

Files:

Experiment_1200.log

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26 Feb 2021 16:19:16,593 INFO : Copying experiment "Utilizing Skyline to Analyze Lipidomics Data Containing Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry Dimensions" from folder /NCSU - Baker Lab/Lipid Libraries to /Panorama Public/2021/NCSU Baker Lab - Lipid Libraries

26 Feb 2021 16:19:16,593 INFO : =======================================

26 Feb 2021 16:19:16,805 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

26 Feb 2021 16:19:16,805 INFO :

26 Feb 2021 16:19:16,805 INFO : Exporting experiment.

26 Feb 2021 16:19:17,975 INFO :

26 Feb 2021 16:19:17,975 INFO : Experiment export completed successfully.

26 Feb 2021 16:19:17,975 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

26 Feb 2021 16:19:18,049 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

26 Feb 2021 16:19:18,049 INFO :

26 Feb 2021 16:19:18,049 INFO : Importing experiment.

26 Feb 2021 16:19:18,058 INFO : Loading folder properties (folder type, settings and active modules)

26 Feb 2021 16:19:18,236 INFO : Done importing folder properties (folder type, settings and active modules)

26 Feb 2021 16:19:18,241 INFO : Loading etl definitions

26 Feb 2021 16:19:18,247 INFO : Loading wikis

26 Feb 2021 16:19:18,250 INFO : 0 wikis imported

26 Feb 2021 16:19:18,250 INFO : Done importing wikis

26 Feb 2021 16:19:18,250 INFO : Starting to copy files

26 Feb 2021 16:19:21,704 INFO : Copied 53 files

26 Feb 2021 16:19:21,705 INFO : Ensuring exp.data rows exist for imported files

26 Feb 2021 16:19:23,064 INFO : Loading xar

26 Feb 2021 16:19:23,102 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip'

26 Feb 2021 16:19:23,113 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip.Core'

26 Feb 2021 16:19:23,120 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip.Output'

26 Feb 2021 16:19:23,120 DEBUG: Protocol import complete

26 Feb 2021 16:19:23,123 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8285:Utilizing+Skyline+to+Analyze+Lipidomics+Data+Containing+Liquid+Chromatography%2C+Ion+Mobility+Spectrometry+and+Mass+Spectrometry+Dimensions'

26 Feb 2021 16:19:23,123 DEBUG: Experiment/Run group import complete

26 Feb 2021 16:19:23,152 DEBUG: Protocol action set import complete

26 Feb 2021 16:19:23,210 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip'

26 Feb 2021 16:19:23,227 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8285:dc00b33e-5839-1039-9674-3013bb9b91fd'

26 Feb 2021 16:19:23,227 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip.Core'

26 Feb 2021 16:19:23,233 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip.Output'

26 Feb 2021 16:19:23,234 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8285:dc00b506-5839-1039-9674-3013bb9b91fd'

26 Feb 2021 16:19:23,259 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip'

26 Feb 2021 16:19:23,271 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8285:b47c53dd-5839-1039-9674-3013bb9b91fd'

26 Feb 2021 16:19:23,271 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip.Core'

26 Feb 2021 16:19:23,275 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8285:TargetedMS.ImportSkyZip.Output'

26 Feb 2021 16:19:23,277 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8285:b47c543e-5839-1039-9674-3013bb9b91fd'

26 Feb 2021 16:19:23,279 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Lipid%20Libraries_33239ba1-5abf-1039-9674-3013bb9b91fd/_temp__2021-02-26_16-19-16/export/xar/experiments_and_runs.xar.exploded/Run102299/2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip into the system

26 Feb 2021 16:19:23,282 INFO : Starting import from 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

26 Feb 2021 16:19:23,290 INFO : Starting to import Skyline document from 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

26 Feb 2021 16:19:23,290 INFO : Expanding Negative_Plasma_Lipid_iRT.irtdb

26 Feb 2021 16:19:23,291 INFO : Expanding Plasma_Lipids_Negative.blib

26 Feb 2021 16:19:23,295 INFO : Expanding 2_Plasma_Lipid_Library_Negative.sky.view

26 Feb 2021 16:19:23,296 INFO : Expanding 2_Plasma_Lipid_Library_Negative.sky

26 Feb 2021 16:19:23,300 INFO : Expanding 2_Plasma_Lipid_Library_Negative.skyl

26 Feb 2021 16:19:23,324 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

26 Feb 2021 16:19:23,333 INFO : 2% Done

26 Feb 2021 16:19:23,338 WARN : Unable to find file /data/apache-tomcat/temp/Pipeline_temp/NCSU Baker Lab - Lipid Libraries_33239ba1-5abf-1039-9674-3013bb9b91fd/_temp__2021-02-26_16-19-16/export/xar/experiments_and_runs.xar.exploded/Run102299/2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37/2_Plasma_Lipid_Library_Negative.skyd, unable to import chromatograms

26 Feb 2021 16:19:23,573 INFO : Inserting Cer (Ceramide)

26 Feb 2021 16:19:23,625 INFO : 3% Done

26 Feb 2021 16:19:23,676 INFO : 4% Done

26 Feb 2021 16:19:23,728 INFO : 5% Done

26 Feb 2021 16:19:23,813 INFO : 6% Done

26 Feb 2021 16:19:23,861 INFO : 7% Done

26 Feb 2021 16:19:23,936 INFO : 8% Done

26 Feb 2021 16:19:23,986 INFO : 9% Done

26 Feb 2021 16:19:24,032 INFO : 10% Done

26 Feb 2021 16:19:24,077 INFO : 11% Done

26 Feb 2021 16:19:24,166 INFO : 12% Done

26 Feb 2021 16:19:24,213 INFO : 13% Done

26 Feb 2021 16:19:24,258 INFO : 14% Done

26 Feb 2021 16:19:24,332 DEBUG: Total molecules inserted: 16

26 Feb 2021 16:19:24,332 INFO : Inserting FA (Fatty acyl)

26 Feb 2021 16:19:24,350 INFO : 15% Done

26 Feb 2021 16:19:24,395 INFO : 16% Done

26 Feb 2021 16:19:24,430 INFO : 17% Done

26 Feb 2021 16:19:24,504 INFO : 18% Done

26 Feb 2021 16:19:24,543 INFO : 19% Done

26 Feb 2021 16:19:24,577 INFO : 20% Done

26 Feb 2021 16:19:24,612 DEBUG: Inserted 50 molecules

26 Feb 2021 16:19:24,623 DEBUG: Total molecules inserted: 51

26 Feb 2021 16:19:24,624 INFO : Inserting GM3 (Ganglioside)

26 Feb 2021 16:19:24,640 INFO : 21% Done

26 Feb 2021 16:19:24,674 DEBUG: Total molecules inserted: 4

26 Feb 2021 16:19:24,674 INFO : Inserting HexCer (Glc/Glu Glycosphingolipid)

26 Feb 2021 16:19:24,680 INFO : 23% Done

26 Feb 2021 16:19:24,764 INFO : 24% Done

26 Feb 2021 16:19:24,809 INFO : 25% Done

26 Feb 2021 16:19:24,850 INFO : 26% Done

26 Feb 2021 16:19:24,913 INFO : 27% Done

26 Feb 2021 16:19:24,945 INFO : 29% Done

26 Feb 2021 16:19:24,974 DEBUG: Total molecules inserted: 8

26 Feb 2021 16:19:24,975 INFO : Inserting LPC (Lyso phosphatidylcholine)

26 Feb 2021 16:19:25,013 INFO : 30% Done

26 Feb 2021 16:19:25,032 INFO : 31% Done

26 Feb 2021 16:19:25,055 INFO : 32% Done

26 Feb 2021 16:19:25,094 INFO : 33% Done

26 Feb 2021 16:19:25,113 INFO : 34% Done

26 Feb 2021 16:19:25,127 DEBUG: Total molecules inserted: 26

26 Feb 2021 16:19:25,127 INFO : Inserting LPE (Lyso phosphatidylethanolamine)

26 Feb 2021 16:19:25,137 INFO : 35% Done

26 Feb 2021 16:19:25,176 INFO : 36% Done

26 Feb 2021 16:19:25,197 INFO : 37% Done

26 Feb 2021 16:19:25,208 DEBUG: Total molecules inserted: 12

26 Feb 2021 16:19:25,208 INFO : Inserting PA (Phosphatidic acid)

26 Feb 2021 16:19:25,212 INFO : 38% Done

26 Feb 2021 16:19:25,220 DEBUG: Total molecules inserted: 1

26 Feb 2021 16:19:25,220 INFO : Inserting PC (Phosphatidylcholine)

26 Feb 2021 16:19:25,252 INFO : 39% Done

26 Feb 2021 16:19:25,278 INFO : 40% Done

26 Feb 2021 16:19:25,297 INFO : 41% Done

26 Feb 2021 16:19:25,329 INFO : 42% Done

26 Feb 2021 16:19:25,352 INFO : 43% Done

26 Feb 2021 16:19:25,380 INFO : 44% Done

26 Feb 2021 16:19:25,423 INFO : 45% Done

26 Feb 2021 16:19:25,444 INFO : 46% Done

26 Feb 2021 16:19:25,466 INFO : 47% Done

26 Feb 2021 16:19:25,506 INFO : 48% Done

26 Feb 2021 16:19:25,526 INFO : 49% Done

26 Feb 2021 16:19:25,550 INFO : 50% Done

26 Feb 2021 16:19:25,573 INFO : 51% Done

26 Feb 2021 16:19:25,629 INFO : 52% Done

26 Feb 2021 16:19:25,648 INFO : 53% Done

26 Feb 2021 16:19:25,671 INFO : 54% Done

26 Feb 2021 16:19:25,718 INFO : 55% Done

26 Feb 2021 16:19:25,718 DEBUG: Inserted 50 molecules

26 Feb 2021 16:19:25,739 INFO : 56% Done

26 Feb 2021 16:19:25,760 INFO : 57% Done

26 Feb 2021 16:19:25,769 DEBUG: Total molecules inserted: 54

26 Feb 2021 16:19:25,769 INFO : Inserting PC(O/P-) (Akyl/alkenyl ether phosphatidylcholine)

26 Feb 2021 16:19:25,801 INFO : 58% Done

26 Feb 2021 16:19:25,821 INFO : 59% Done

26 Feb 2021 16:19:25,841 INFO : 60% Done

26 Feb 2021 16:19:25,936 INFO : 61% Done

26 Feb 2021 16:19:25,994 INFO : 62% Done

26 Feb 2021 16:19:26,037 INFO : 63% Done

26 Feb 2021 16:19:26,135 INFO : 64% Done

26 Feb 2021 16:19:26,147 DEBUG: Total molecules inserted: 22

26 Feb 2021 16:19:26,147 INFO : Inserting PE (Phosphatidylethanolamine)

26 Feb 2021 16:19:26,191 INFO : 65% Done

26 Feb 2021 16:19:26,237 INFO : 66% Done

26 Feb 2021 16:19:26,323 INFO : 67% Done

26 Feb 2021 16:19:26,380 INFO : 68% Done

26 Feb 2021 16:19:26,421 INFO : 69% Done

26 Feb 2021 16:19:26,525 INFO : 70% Done

26 Feb 2021 16:19:26,586 INFO : 71% Done

26 Feb 2021 16:19:26,636 INFO : 72% Done

26 Feb 2021 16:19:26,731 INFO : 73% Done

26 Feb 2021 16:19:26,788 INFO : 74% Done

26 Feb 2021 16:19:26,930 INFO : 75% Done

26 Feb 2021 16:19:26,976 INFO : 76% Done

26 Feb 2021 16:19:27,022 INFO : 77% Done

26 Feb 2021 16:19:27,042 DEBUG: Total molecules inserted: 44

26 Feb 2021 16:19:27,043 INFO : Inserting PE(O/P-) (Alkyl/alkenyl ether phosphatidylethanolamine)

26 Feb 2021 16:19:27,066 INFO : 78% Done

26 Feb 2021 16:19:27,159 INFO : 79% Done

26 Feb 2021 16:19:27,217 INFO : 80% Done

26 Feb 2021 16:19:27,276 INFO : 81% Done

26 Feb 2021 16:19:27,370 INFO : 82% Done

26 Feb 2021 16:19:27,410 INFO : 83% Done

26 Feb 2021 16:19:27,467 INFO : 84% Done

26 Feb 2021 16:19:27,560 INFO : 85% Done

26 Feb 2021 16:19:27,602 DEBUG: Total molecules inserted: 30

26 Feb 2021 16:19:27,603 INFO : Inserting PG (Phosphatidylglycerol)

26 Feb 2021 16:19:27,609 INFO : 86% Done

26 Feb 2021 16:19:27,661 DEBUG: Total molecules inserted: 3

26 Feb 2021 16:19:27,667 INFO : 87% Done

26 Feb 2021 16:19:27,667 INFO : Inserting PI (Phosphatidylinositol)

26 Feb 2021 16:19:27,760 INFO : 88% Done

26 Feb 2021 16:19:27,806 INFO : 89% Done

26 Feb 2021 16:19:27,853 INFO : 90% Done

26 Feb 2021 16:19:27,936 INFO : 91% Done

26 Feb 2021 16:19:27,991 INFO : 92% Done

26 Feb 2021 16:19:28,048 INFO : 93% Done

26 Feb 2021 16:19:28,109 DEBUG: Total molecules inserted: 19

26 Feb 2021 16:19:28,109 INFO : Inserting SM (Sphingomyelin)

26 Feb 2021 16:19:28,151 INFO : 94% Done

26 Feb 2021 16:19:28,197 INFO : 95% Done

26 Feb 2021 16:19:28,243 INFO : 96% Done

26 Feb 2021 16:19:28,346 INFO : 97% Done

26 Feb 2021 16:19:28,389 INFO : 98% Done

26 Feb 2021 16:19:28,451 DEBUG: Total molecules inserted: 16

26 Feb 2021 16:19:28,453 INFO : Done parsing Skyline document.

26 Feb 2021 16:19:28,486 INFO : Creating and populating temp tables for Proportion values

26 Feb 2021 16:19:28,561 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 Feb 2021 16:19:28,563 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 Feb 2021 16:19:28,565 INFO : Cleaning up temp tables

26 Feb 2021 16:19:28,569 INFO : Completed import of Skyline document from 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

26 Feb 2021 16:19:28,576 INFO : 100% Done

26 Feb 2021 16:19:28,587 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Lipid%20Libraries_33239ba1-5abf-1039-9674-3013bb9b91fd/_temp__2021-02-26_16-19-16/export/xar/experiments_and_runs.xar.exploded/Run102299/2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip into the system

26 Feb 2021 16:19:28,588 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Lipid%20Libraries_33239ba1-5abf-1039-9674-3013bb9b91fd/_temp__2021-02-26_16-19-16/export/xar/experiments_and_runs.xar.exploded/Run102298/1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33.sky.zip into the system

26 Feb 2021 16:19:28,598 INFO : Starting import from 1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33.sky.zip

26 Feb 2021 16:19:28,607 INFO : Starting to import Skyline document from 1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33.sky.zip

26 Feb 2021 16:19:28,607 INFO : Expanding Negative_Plasma_Lipid_iRT.irtdb

26 Feb 2021 16:19:28,609 INFO : Expanding Plasma_Lipids_Negative.blib

26 Feb 2021 16:19:28,613 INFO : Expanding 1_Plasma_Lipid_Library_Negative_iRT_Calibration.sky.view

26 Feb 2021 16:19:28,614 INFO : Expanding 1_Plasma_Lipid_Library_Negative_iRT_Calibration.sky

26 Feb 2021 16:19:28,615 INFO : Expanding 1_Plasma_Lipid_Library_Negative_iRT_Calibration.skyl

26 Feb 2021 16:19:28,644 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

26 Feb 2021 16:19:28,656 INFO : 5% Done

26 Feb 2021 16:19:28,662 WARN : Unable to find file /data/apache-tomcat/temp/Pipeline_temp/NCSU Baker Lab - Lipid Libraries_33239ba1-5abf-1039-9674-3013bb9b91fd/_temp__2021-02-26_16-19-16/export/xar/experiments_and_runs.xar.exploded/Run102298/1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33/1_Plasma_Lipid_Library_Negative_iRT_Calibration.skyd, unable to import chromatograms

26 Feb 2021 16:19:28,675 INFO : Calculated iRT regression line from full standard list.

26 Feb 2021 16:19:28,972 INFO : Inserting Negative Plasma Lipid iRT Calibrants

26 Feb 2021 16:19:28,999 INFO : 10% Done

26 Feb 2021 16:19:29,023 INFO : 16% Done

26 Feb 2021 16:19:29,048 INFO : 19% Done

26 Feb 2021 16:19:29,073 INFO : 25% Done

26 Feb 2021 16:19:29,100 INFO : 28% Done

26 Feb 2021 16:19:29,124 INFO : 31% Done

26 Feb 2021 16:19:29,149 INFO : 37% Done

26 Feb 2021 16:19:29,174 INFO : 44% Done

26 Feb 2021 16:19:29,203 INFO : 47% Done

26 Feb 2021 16:19:29,227 INFO : 50% Done

26 Feb 2021 16:19:29,250 INFO : 56% Done

26 Feb 2021 16:19:29,276 INFO : 60% Done

26 Feb 2021 16:19:29,300 INFO : 63% Done

26 Feb 2021 16:19:29,322 INFO : 66% Done

26 Feb 2021 16:19:29,344 INFO : 78% Done

26 Feb 2021 16:19:29,400 INFO : 90% Done

26 Feb 2021 16:19:29,469 INFO : 98% Done

26 Feb 2021 16:19:29,517 DEBUG: Total molecules inserted: 20

26 Feb 2021 16:19:29,520 INFO : Done parsing Skyline document.

26 Feb 2021 16:19:29,552 INFO : Creating and populating temp tables for Proportion values

26 Feb 2021 16:19:29,567 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 Feb 2021 16:19:29,569 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 Feb 2021 16:19:29,571 INFO : Cleaning up temp tables

26 Feb 2021 16:19:29,574 INFO : Completed import of Skyline document from 1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33.sky.zip

26 Feb 2021 16:19:29,581 INFO : 100% Done

26 Feb 2021 16:19:29,592 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Lipid%20Libraries_33239ba1-5abf-1039-9674-3013bb9b91fd/_temp__2021-02-26_16-19-16/export/xar/experiments_and_runs.xar.exploded/Run102298/1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33.sky.zip into the system

26 Feb 2021 16:19:29,624 INFO : Done importing xar

26 Feb 2021 16:19:29,630 INFO : Loading pages and webpart properties

26 Feb 2021 16:19:29,854 INFO : Done importing pages and webpart properties

26 Feb 2021 16:19:29,855 INFO :

26 Feb 2021 16:19:29,855 INFO : Experiment import completed successfully.

26 Feb 2021 16:19:29,855 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

26 Feb 2021 16:19:29,934 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

26 Feb 2021 16:19:29,935 INFO :

26 Feb 2021 16:19:29,935 INFO : Finishing up experiment copy.

26 Feb 2021 16:19:29,937 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

26 Feb 2021 16:19:29,951 INFO : Updating access URL to point to the new copy of the data.

26 Feb 2021 16:19:29,960 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

26 Feb 2021 16:19:29,963 INFO : Removing copy permissions given to journal.

26 Feb 2021 16:19:29,991 INFO : Adding read permissions to all users that are folder admins in the source container.

26 Feb 2021 16:19:30,015 INFO : Setting the TargetedMS folder type to 'Experimental Data'

26 Feb 2021 16:19:30,032 INFO : Updating the 'Raw Data' tab configuration

26 Feb 2021 16:19:30,040 INFO : Updating dataFileUrls for run 1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33.sky.zip; targetedms run ID 104818

26 Feb 2021 16:19:30,061 INFO : Targetedms run 104818 in container org.labkey.api.data.Container@1951192245 /Panorama Public/2021/NCSU Baker Lab - Lipid Libraries/ 33239ba1-5abf-1039-9674-3013bb9b91fd does not have a skydDataId.

26 Feb 2021 16:19:30,062 INFO : Updating dataFileUrl...

26 Feb 2021 16:19:30,062 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Lipid%20Libraries_33239ba1-5abf-1039-9674-3013bb9b91fd/_temp__2021-02-26_16-19-16/export/xar/experiments_and_runs.xar.exploded/Run102298/1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33.sky.zip

26 Feb 2021 16:19:30,063 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/NCSU%20Baker%20Lab%20-%20Lipid%20Libraries/@files/1_Plasma_Lipid_Library_Negative_iRT_Calibration_2021-02-23_14-17-33.sky.zip

26 Feb 2021 16:19:30,079 INFO : Updating dataFileUrls for run 2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip; targetedms run ID 104817

26 Feb 2021 16:19:30,079 INFO : Targetedms run 104817 in container org.labkey.api.data.Container@1951192245 /Panorama Public/2021/NCSU Baker Lab - Lipid Libraries/ 33239ba1-5abf-1039-9674-3013bb9b91fd does not have a skydDataId.

26 Feb 2021 16:19:30,080 INFO : Updating dataFileUrl...

26 Feb 2021 16:19:30,080 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Lipid%20Libraries_33239ba1-5abf-1039-9674-3013bb9b91fd/_temp__2021-02-26_16-19-16/export/xar/experiments_and_runs.xar.exploded/Run102299/2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

26 Feb 2021 16:19:30,081 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/NCSU%20Baker%20Lab%20-%20Lipid%20Libraries/@files/2_Plasma_Lipid_Library_Negative_2021-02-23_14-18-37.sky.zip

26 Feb 2021 16:19:30,090 INFO : Creating a reviewer account.

26 Feb 2021 16:19:31,016 INFO : Created reviewer with email: User panorama+baker@proteinms.net

26 Feb 2021 16:19:31,030 INFO : Hiding the Data Pipeline tab.

26 Feb 2021 16:19:31,197 INFO : Emailing submitter.

26 Feb 2021 16:19:31,449 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'