Copying experiment: Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning: /Panorama Public/2019/JBEI

Copying experiment: Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning

JBEI - Beller DBTL-ML manuscript

Job Status

Created:

2019-01-11 15:37:47

Modified:

2020-04-21 05:11:51

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning

File Path:

/data/labkey/files/Panorama Public/2019/JBEI - Beller DBTL-ML manuscript/@files/Experiment_674.log

Files:

Experiment_674.log

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11 Jan 2019 15:37:47,309 INFO : Copying experiment "Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning" from folder /JBEI/Beller - DBTL-ML manuscript to /Panorama Public/2019/JBEI - Beller DBTL-ML manuscript

11 Jan 2019 15:37:47,310 INFO : =======================================

11 Jan 2019 15:37:47,431 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

11 Jan 2019 15:37:47,431 INFO :

11 Jan 2019 15:37:47,431 INFO : Exporting experiment.

11 Jan 2019 15:37:51,502 INFO :

11 Jan 2019 15:37:51,503 INFO : Experiment export completed successfully.

11 Jan 2019 15:37:51,503 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

11 Jan 2019 15:37:51,551 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'

11 Jan 2019 15:37:51,552 INFO :

11 Jan 2019 15:37:51,552 INFO : Importing experiment.

11 Jan 2019 15:37:51,562 INFO : Loading folder properties (folder type, settings and active modules)

11 Jan 2019 15:37:51,711 INFO : Done importing folder properties (folder type, settings and active modules)

11 Jan 2019 15:37:51,717 INFO : Loading container specific module properties

11 Jan 2019 15:37:51,744 INFO : Done importing container specific module properties

11 Jan 2019 15:37:51,750 INFO : Loading xar

11 Jan 2019 15:37:52,393 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4862:TargetedMS.ImportSkyZip'

11 Jan 2019 15:37:52,400 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4862:TargetedMS.ImportSkyZip.Core'

11 Jan 2019 15:37:52,406 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4862:TargetedMS.ImportSkyZip.Output'

11 Jan 2019 15:37:52,407 DEBUG: Protocol import complete

11 Jan 2019 15:37:52,427 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4862:Lessons+from+Two+Design-Build-Test-Learn+Cycles+of+Dodecanol+Production+in+Escherichia+coli+Aided+by+Machine+Learning'

11 Jan 2019 15:37:52,427 DEBUG: Experiment/Run group import complete

11 Jan 2019 15:37:52,454 DEBUG: Protocol action set import complete

11 Jan 2019 15:37:52,517 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4862:TargetedMS.ImportSkyZip'

11 Jan 2019 15:37:52,740 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-4862:97078417-f74b-1036-8133-3013bb9b374c'

11 Jan 2019 15:37:52,769 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4862:970783e8-f74b-1036-8133-3013bb9b374c'

11 Jan 2019 15:37:52,769 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4862:TargetedMS.ImportSkyZip.Core'

11 Jan 2019 15:37:52,778 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4862:TargetedMS.ImportSkyZip.Output'

11 Jan 2019 15:37:52,780 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4862:97078a0d-f74b-1036-8133-3013bb9b374c'

11 Jan 2019 15:37:52,782 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/JBEI%20-%20Beller%20DBTL-ML%20manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run45821/20190110%20-%20Ajinomoto%20Complete_2019-01-10_13-31-48/20190110%20-%20Ajinomoto%20Complete.skyd into the system

11 Jan 2019 15:37:52,783 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/JBEI%20-%20Beller%20DBTL-ML%20manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run45821/20190110%20-%20Ajinomoto%20Complete_2019-01-10_13-31-48/20190110%20-%20Ajinomoto%20Complete.skyd into the system

11 Jan 2019 15:37:52,784 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/JBEI%20-%20Beller%20DBTL-ML%20manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run45821/20190110%20-%20Ajinomoto%20Complete_2019-01-10_13-31-48.sky.zip into the system

11 Jan 2019 15:37:52,796 INFO : Starting import from 20190110 - Ajinomoto Complete_2019-01-10_13-31-48.sky.zip

11 Jan 2019 15:37:52,812 INFO : Starting to import Skyline document from 20190110 - Ajinomoto Complete_2019-01-10_13-31-48.sky.zip

11 Jan 2019 15:37:52,826 INFO : Expanding 20190110 - Ajinomoto Complete.skyd

11 Jan 2019 15:37:53,185 INFO : Expanding 20190110 - Ajinomoto Complete.sky.view

11 Jan 2019 15:37:53,187 INFO : Expanding 20190110 - Ajinomoto Complete.sky

11 Jan 2019 15:37:53,343 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1

11 Jan 2019 15:37:54,658 INFO : Inserting sp|P69451|LCFA_ECOLI

11 Jan 2019 15:38:04,738 INFO : Inserting tr|A1U2T0|A1U2T0_MARHV

11 Jan 2019 15:38:21,919 INFO : Inserting tr|A1U3L3|A1U3L3_MARHV

11 Jan 2019 15:38:36,503 INFO : Inserting sp|Q6F7B8|ACR1_ACIAD

11 Jan 2019 15:38:47,628 INFO : Inserting sp|P27250|AHR_ECOLI

11 Jan 2019 15:38:57,678 INFO : Inserting sp|Q41635|FATB_UMBCA

11 Jan 2019 15:39:07,451 INFO : Completed import of Skyline document from 20190110 - Ajinomoto Complete_2019-01-10_13-31-48.sky.zip

11 Jan 2019 15:39:07,456 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/JBEI%20-%20Beller%20DBTL-ML%20manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run45821/20190110%20-%20Ajinomoto%20Complete_2019-01-10_13-31-48.sky.zip into the system

11 Jan 2019 15:39:07,575 INFO : Done importing xar

11 Jan 2019 15:39:07,578 INFO : Loading wikis

11 Jan 2019 15:39:07,605 INFO : 0 wikis imported

11 Jan 2019 15:39:07,605 INFO : Done importing wikis

11 Jan 2019 15:39:08,199 INFO : Loading pages and webpart properties

11 Jan 2019 15:39:08,226 INFO : Done importing pages and webpart properties

11 Jan 2019 15:39:08,227 INFO :

11 Jan 2019 15:39:08,227 INFO : Experiment import completed successfully.

11 Jan 2019 15:39:08,227 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

11 Jan 2019 15:39:08,240 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'

11 Jan 2019 15:39:08,240 INFO :

11 Jan 2019 15:39:08,240 INFO : Finishing up experiment copy.

11 Jan 2019 15:39:08,241 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

11 Jan 2019 15:39:08,457 INFO : Updating access URL to point to the new copy of the data.

11 Jan 2019 15:39:08,917 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'