05 Mar 2018 12:16:22,280 INFO : Copying experiment "Discovery of a testis-specific complex TEX101-DPEP3 and selection of its disrupting antibodies" from folder /U of Toronto - Diamandis Lab/Schiza et al., TEX101-DPEP3 protein complex discovery and validation to /Panorama Public/2018/Diamandis Lab - Schiza et al., TEX101-DPEP3 protein complex discovery and validation
05 Mar 2018 12:16:22,281 INFO : =======================================
05 Mar 2018 12:16:22,382 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
05 Mar 2018 12:16:22,385 INFO :
05 Mar 2018 12:16:22,385 INFO : Exporting experiment.
05 Mar 2018 12:16:24,307 INFO :
05 Mar 2018 12:16:24,307 INFO : Experiment export completed successfully.
05 Mar 2018 12:16:24,307 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
05 Mar 2018 12:16:24,318 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
05 Mar 2018 12:16:24,318 INFO :
05 Mar 2018 12:16:24,318 INFO : Importing experiment.
05 Mar 2018 12:16:24,381 INFO : Loading folder properties (folder type, settings and active modules)
05 Mar 2018 12:16:24,488 INFO : Done importing folder properties (folder type, settings and active modules)
05 Mar 2018 12:16:24,490 INFO : Loading container specific module properties
05 Mar 2018 12:16:24,494 INFO : Done importing container specific module properties
05 Mar 2018 12:16:24,498 INFO : Loading xar
05 Mar 2018 12:16:24,934 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip'
05 Mar 2018 12:16:24,942 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Core'
05 Mar 2018 12:16:24,950 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Output'
05 Mar 2018 12:16:24,950 DEBUG: Protocol import complete
05 Mar 2018 12:16:24,954 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3887:Discovery+of+a+testis-specific+complex+TEX101-DPEP3+and+selection+of+its+disrupting+antibodies'
05 Mar 2018 12:16:24,954 DEBUG: Experiment/Run group import complete
05 Mar 2018 12:16:24,986 DEBUG: Protocol action set import complete
05 Mar 2018 12:16:25,058 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip'
05 Mar 2018 12:16:25,325 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3887:773e7da1-02bd-1036-940b-3013bb9b1c47'
05 Mar 2018 12:16:25,325 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Core'
05 Mar 2018 12:16:25,335 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Output'
05 Mar 2018 12:16:25,337 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3887:773e7dc3-02bd-1036-940b-3013bb9b1c47'
05 Mar 2018 12:16:25,362 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip'
05 Mar 2018 12:16:25,384 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3887:773e7bb5-02bd-1036-940b-3013bb9b1c47'
05 Mar 2018 12:16:25,385 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Core'
05 Mar 2018 12:16:25,391 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Output'
05 Mar 2018 12:16:25,393 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3887:773e7be9-02bd-1036-940b-3013bb9b1c47'
05 Mar 2018 12:16:25,412 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip'
05 Mar 2018 12:16:25,429 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3887:773e7fba-02bd-1036-940b-3013bb9b1c47'
05 Mar 2018 12:16:25,429 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Core'
05 Mar 2018 12:16:25,434 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Output'
05 Mar 2018 12:16:25,436 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3887:773e7fd5-02bd-1036-940b-3013bb9b1c47'
05 Mar 2018 12:16:25,453 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip'
05 Mar 2018 12:16:25,468 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3887:773e8683-02bd-1036-940b-3013bb9b1c47'
05 Mar 2018 12:16:25,468 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Core'
05 Mar 2018 12:16:25,473 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3887:TargetedMS.ImportSkyZip.Output'
05 Mar 2018 12:16:25,474 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3887:773e86a2-02bd-1036-940b-3013bb9b1c47'
05 Mar 2018 12:16:25,476 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.,%20TEX101-DPEP3%20protein%20complex%20discovery%20and%20validation/@files/export/xar/experiments_and_runs.xar.exploded/Run28182/Skyline-SRM-validation-tissue_2018-03-05_11-25-44.sky.zip into the system
05 Mar 2018 12:16:25,482 INFO : Starting import from Skyline-SRM-validation-tissue_2018-03-05_11-25-44.sky.zip
05 Mar 2018 12:16:25,497 INFO : Starting to import Skyline document from Skyline-SRM-validation-tissue_2018-03-05_11-25-44.sky.zip
05 Mar 2018 12:16:25,497 INFO : Expanding Skyline-SRM-validation-tissue.skyd
05 Mar 2018 12:16:25,560 INFO : Expanding Skyline-SRM-validation-tissue.sky.view
05 Mar 2018 12:16:25,561 INFO : Expanding Skyline-SRM-validation-tissue.sky
05 Mar 2018 12:16:25,671 INFO : Inserting TEX101_Q9BY14
05 Mar 2018 12:16:25,937 INFO : Inserting DPEP3_Q9H4B8
05 Mar 2018 12:16:26,153 INFO : Inserting ACE2_Q9BYF1
05 Mar 2018 12:16:26,419 INFO : Inserting CD59_P13987
05 Mar 2018 12:16:26,674 INFO : Inserting CD81_P60033
05 Mar 2018 12:16:26,913 INFO : Inserting ITGB1_P05556
05 Mar 2018 12:16:27,119 INFO : Inserting LAMP1_P11279
05 Mar 2018 12:16:27,329 INFO : Inserting NT5E_P21589
05 Mar 2018 12:16:27,530 INFO : Inserting PRND_Q9UKY0
05 Mar 2018 12:16:27,738 INFO : Inserting ART3_Q13508
05 Mar 2018 12:16:29,976 INFO : Completed import of Skyline document from Skyline-SRM-validation-tissue_2018-03-05_11-25-44.sky.zip
05 Mar 2018 12:16:29,985 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.,%20TEX101-DPEP3%20protein%20complex%20discovery%20and%20validation/@files/export/xar/experiments_and_runs.xar.exploded/Run28182/Skyline-SRM-validation-tissue_2018-03-05_11-25-44.sky.zip into the system
05 Mar 2018 12:16:29,985 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.,%20TEX101-DPEP3%20protein%20complex%20discovery%20and%20validation/@files/export/xar/experiments_and_runs.xar.exploded/Run28181/Skyline-SRM-validation-cells_2018-03-05_11-22-45.sky.zip into the system
05 Mar 2018 12:16:29,988 INFO : Starting import from Skyline-SRM-validation-cells_2018-03-05_11-22-45.sky.zip
05 Mar 2018 12:16:29,992 INFO : Starting to import Skyline document from Skyline-SRM-validation-cells_2018-03-05_11-22-45.sky.zip
05 Mar 2018 12:16:29,992 INFO : Expanding Skyline-SRM-validation-cells.skyd
05 Mar 2018 12:16:30,045 INFO : Expanding Skyline-SRM-validation-cells.sky.view
05 Mar 2018 12:16:30,046 INFO : Expanding Skyline-SRM-validation-cells.sky
05 Mar 2018 12:16:30,124 INFO : Inserting TEX101_Q9BY14
05 Mar 2018 12:16:30,275 INFO : Inserting DPEP3_Q9H4B8
05 Mar 2018 12:16:30,470 INFO : Inserting CD59_P13987
05 Mar 2018 12:16:30,623 INFO : Inserting LAMP1_P11279
05 Mar 2018 12:16:30,830 INFO : Inserting ZPBP_Q9BS86
05 Mar 2018 12:16:31,067 INFO : Inserting SPACA1_Q9HBV2
05 Mar 2018 12:16:31,294 INFO : Inserting SPACA4_Q8TDM5
05 Mar 2018 12:16:31,521 INFO : Inserting SLC2A14_Q8TDB8
05 Mar 2018 12:16:31,791 INFO : Inserting ACE_P12821
05 Mar 2018 12:16:32,015 INFO : Inserting IZUMO4_Q1ZYL8
05 Mar 2018 12:16:34,087 INFO : Completed import of Skyline document from Skyline-SRM-validation-cells_2018-03-05_11-22-45.sky.zip
05 Mar 2018 12:16:34,092 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.,%20TEX101-DPEP3%20protein%20complex%20discovery%20and%20validation/@files/export/xar/experiments_and_runs.xar.exploded/Run28181/Skyline-SRM-validation-cells_2018-03-05_11-22-45.sky.zip into the system
05 Mar 2018 12:16:34,092 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.,%20TEX101-DPEP3%20protein%20complex%20discovery%20and%20validation/@files/export/xar/experiments_and_runs.xar.exploded/Run28183/Skyline-aTEX101%20clone%20screening_2018-03-05_11-29-37.sky.zip into the system
05 Mar 2018 12:16:34,094 INFO : Starting import from Skyline-aTEX101 clone screening_2018-03-05_11-29-37.sky.zip
05 Mar 2018 12:16:34,097 INFO : Starting to import Skyline document from Skyline-aTEX101 clone screening_2018-03-05_11-29-37.sky.zip
05 Mar 2018 12:16:34,097 INFO : Expanding Skyline-aTEX101 clone screening.skyd
05 Mar 2018 12:16:34,138 INFO : Expanding Skyline-aTEX101 clone screening.sky.view
05 Mar 2018 12:16:34,139 INFO : Expanding Skyline-aTEX101 clone screening.sky
05 Mar 2018 12:16:34,279 INFO : Inserting TEX101
05 Mar 2018 12:16:34,566 INFO : Completed import of Skyline document from Skyline-aTEX101 clone screening_2018-03-05_11-29-37.sky.zip
05 Mar 2018 12:16:34,582 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.,%20TEX101-DPEP3%20protein%20complex%20discovery%20and%20validation/@files/export/xar/experiments_and_runs.xar.exploded/Run28183/Skyline-aTEX101%20clone%20screening_2018-03-05_11-29-37.sky.zip into the system
05 Mar 2018 12:16:34,582 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.,%20TEX101-DPEP3%20protein%20complex%20discovery%20and%20validation/@files/export/xar/experiments_and_runs.xar.exploded/Run28184/Skyline_aDPEP3-clone%20screening_2018-03-05_11-39-17.sky.zip into the system
05 Mar 2018 12:16:34,584 INFO : Starting import from Skyline_aDPEP3-clone screening_2018-03-05_11-39-17.sky.zip
05 Mar 2018 12:16:34,587 INFO : Starting to import Skyline document from Skyline_aDPEP3-clone screening_2018-03-05_11-39-17.sky.zip
05 Mar 2018 12:16:34,587 INFO : Expanding Skyline_aDPEP3-clone screening.skyd
05 Mar 2018 12:16:34,630 INFO : Expanding Skyline_aDPEP3-clone screening.sky.view
05 Mar 2018 12:16:34,630 INFO : Expanding Skyline_aDPEP3-clone screening.sky
05 Mar 2018 12:16:34,697 INFO : Inserting DPEP3_Q9H4B8
05 Mar 2018 12:16:35,016 INFO : Inserting DPEP3_Q9H4B8
05 Mar 2018 12:16:35,486 INFO : Inserting DPEP3_Q9H4B8
05 Mar 2018 12:16:37,709 INFO : Completed import of Skyline document from Skyline_aDPEP3-clone screening_2018-03-05_11-39-17.sky.zip
05 Mar 2018 12:16:37,714 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.,%20TEX101-DPEP3%20protein%20complex%20discovery%20and%20validation/@files/export/xar/experiments_and_runs.xar.exploded/Run28184/Skyline_aDPEP3-clone%20screening_2018-03-05_11-39-17.sky.zip into the system
05 Mar 2018 12:16:37,717 INFO : Done importing xar
05 Mar 2018 12:16:37,720 INFO : Loading wikis
05 Mar 2018 12:16:37,724 INFO : 0 wikis imported
05 Mar 2018 12:16:37,724 INFO : Done importing wikis
05 Mar 2018 12:16:37,727 INFO : Loading pages and webpart properties
05 Mar 2018 12:16:37,836 INFO : Done importing pages and webpart properties
05 Mar 2018 12:16:37,836 INFO :
05 Mar 2018 12:16:37,836 INFO : Experiment import completed successfully.
05 Mar 2018 12:16:37,836 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
05 Mar 2018 12:16:37,844 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
05 Mar 2018 12:16:37,844 INFO :
05 Mar 2018 12:16:37,844 INFO : Finishing up experiment copy.
05 Mar 2018 12:16:37,846 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
05 Mar 2018 12:16:37,940 INFO : Updating access URL to point to the new copy of the data.
05 Mar 2018 12:16:37,958 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'