31 Jan 2018 15:15:31,613 INFO : Copying experiment "Monitoring molecular contaminants and interferences in proteomic data sets" from folder /Amgen/Molecular Contaminants to /Panorama Public/2018/Amgen - Molecular Contaminants

31 Jan 2018 15:15:31,613 INFO : =======================================

31 Jan 2018 15:15:31,642 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

31 Jan 2018 15:15:31,645 INFO : 

31 Jan 2018 15:15:31,645 INFO : Exporting experiment.

31 Jan 2018 15:15:32,228 INFO : 

31 Jan 2018 15:15:32,228 INFO : Experiment export completed successfully.

31 Jan 2018 15:15:32,228 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

31 Jan 2018 15:15:32,246 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'

31 Jan 2018 15:15:32,247 INFO : 

31 Jan 2018 15:15:32,247 INFO : Importing experiment.

31 Jan 2018 15:15:32,254 INFO : Loading folder properties (folder type, settings and active modules)

31 Jan 2018 15:15:32,421 INFO : Done importing folder properties (folder type, settings and active modules)

31 Jan 2018 15:15:32,426 INFO : Loading container specific module properties

31 Jan 2018 15:15:32,436 INFO : Done importing container specific module properties

31 Jan 2018 15:15:32,442 INFO : Loading xar

31 Jan 2018 15:15:32,525 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3820:TargetedMS.ImportSkyZip'

31 Jan 2018 15:15:32,532 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3820:TargetedMS.ImportSkyZip.Core'

31 Jan 2018 15:15:32,538 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3820:TargetedMS.ImportSkyZip.Output'

31 Jan 2018 15:15:32,538 DEBUG: Protocol import complete

31 Jan 2018 15:15:32,563 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3820:Monitoring+molecular+contaminants+and+interferences+in+proteomic+data+sets'

31 Jan 2018 15:15:32,563 DEBUG: Experiment/Run group import complete

31 Jan 2018 15:15:32,628 DEBUG: Protocol action set import complete

31 Jan 2018 15:15:32,660 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3820:TargetedMS.ImportSkyZip'

31 Jan 2018 15:15:32,839 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3820:2e492689-e767-1035-b49b-3013bb9b082f'

31 Jan 2018 15:15:32,839 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3820:TargetedMS.ImportSkyZip.Core'

31 Jan 2018 15:15:32,845 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3820:TargetedMS.ImportSkyZip.Output'

31 Jan 2018 15:15:32,846 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3820:2e4927c4-e767-1035-b49b-3013bb9b082f'

31 Jan 2018 15:15:32,849 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Amgen%20-%20Molecular%20Contaminants/@files/export/xar/experiments_and_runs.xar.exploded/Run27054/Molecular_Contaminants_MS1_Filtering_v4.1.sky.zip into the system

31 Jan 2018 15:15:32,854 INFO : Starting import from Molecular_Contaminants_MS1_Filtering_v4.1.sky.zip

31 Jan 2018 15:15:32,869 INFO : Starting to import Skyline document from Molecular_Contaminants_MS1_Filtering_v4.1.sky.zip

31 Jan 2018 15:15:32,869 INFO : Expanding Molecular_Contaminants_MS1_Filtering_v4.1.sky.view

31 Jan 2018 15:15:32,869 INFO : Expanding Molecular_Contaminants_MS1_Filtering_v4.1.sky

31 Jan 2018 15:15:32,878 WARN : Unable to find file /data/labkey/files/Panorama Public/2018/Amgen - Molecular Contaminants/@files/export/xar/experiments_and_runs.xar.exploded/Run27054/Molecular_Contaminants_MS1_Filtering_v4.1/Molecular_Contaminants_MS1_Filtering_v4.1.skyd, unable to import chromatograms

31 Jan 2018 15:15:32,899 INFO : Inserting 1,8-Diazabicyclo[5.4.0]undec-7-ene

31 Jan 2018 15:15:32,944 INFO : Inserting 4-Dimethylaminopyridin

31 Jan 2018 15:15:32,951 INFO : Inserting Acetonitrile/Acetic Acid

31 Jan 2018 15:15:32,982 INFO : Inserting Acetonitrile/Formic Acid

31 Jan 2018 15:15:32,988 INFO : Inserting Acetonitrile/Methanol

31 Jan 2018 15:15:33,000 INFO : Inserting Behentrimonium chloride

31 Jan 2018 15:15:33,037 INFO : Inserting Bis(2-ethylhexyl) adipate

31 Jan 2018 15:15:33,053 INFO : Inserting Butylated hydroxyanisole

31 Jan 2018 15:15:33,078 INFO : Inserting Butylated hydroxytoluene

31 Jan 2018 15:15:33,089 INFO : Inserting CHAPS

31 Jan 2018 15:15:33,110 INFO : Inserting DECYL-PEG

31 Jan 2018 15:15:33,414 INFO : Inserting Denatonium

31 Jan 2018 15:15:33,420 INFO : Inserting Dibutyl sebacate

31 Jan 2018 15:15:33,427 INFO : Inserting Dicyclohexylurea

31 Jan 2018 15:15:33,439 INFO : Inserting Didodecyl 3,3' thiodipropionate 

31 Jan 2018 15:15:33,460 INFO : Inserting Diethylene glycol monobutyl ether

31 Jan 2018 15:15:33,471 INFO : Inserting Dimethyl formamide

31 Jan 2018 15:15:33,477 INFO : Inserting Dimethylsulfoxide

31 Jan 2018 15:15:33,504 INFO : Inserting Dimethylsulfoxide\acetonitrile

31 Jan 2018 15:15:33,520 INFO : Inserting Dioctyl adipate 

31 Jan 2018 15:15:33,526 INFO : Inserting Dipalmityldimethylammonium chloride

31 Jan 2018 15:15:33,532 INFO : Inserting Diphenyl ketone

31 Jan 2018 15:15:33,538 INFO : Inserting Distearyldimethylammonium chloride

31 Jan 2018 15:15:33,545 INFO : Inserting Erucamide

31 Jan 2018 15:15:33,605 INFO : Inserting GE

31 Jan 2018 15:15:33,644 INFO : Inserting IGEPAL-630/NP40

31 Jan 2018 15:15:33,785 INFO : Inserting Irganox

31 Jan 2018 15:15:33,808 INFO : Inserting Methanol/Water

31 Jan 2018 15:15:33,855 INFO : Inserting Monomethoxytrityl cation

31 Jan 2018 15:15:33,877 INFO : Inserting N, N-Diisopropylethylamine

31 Jan 2018 15:15:33,894 INFO : Inserting n,n-bis(2-hydroxyethyl) dodecanamide

31 Jan 2018 15:15:33,901 INFO : Inserting n-butyl benzenesulfonamide

31 Jan 2018 15:15:33,932 INFO : Inserting N-methyl 2-pyrrolidone

31 Jan 2018 15:15:33,938 INFO : Inserting n-Nonyl PEG

31 Jan 2018 15:15:34,186 INFO : Inserting nylon 

31 Jan 2018 15:15:34,211 INFO : Inserting Oleamide

31 Jan 2018 15:15:34,226 INFO : Inserting Palmitamidopropyl-trimonium chloride

31 Jan 2018 15:15:34,241 INFO : Inserting PEG

31 Jan 2018 15:15:34,441 INFO : Inserting Phenyldiethylamine

31 Jan 2018 15:15:34,446 INFO : Inserting Phthalate esters

31 Jan 2018 15:15:34,493 INFO : Inserting Polysiloxane

31 Jan 2018 15:15:34,560 INFO : Inserting PPG

31 Jan 2018 15:15:34,810 INFO : Inserting Sodium acetate

31 Jan 2018 15:15:34,830 INFO : Inserting Sodium trifluoroacetate

31 Jan 2018 15:15:34,836 INFO : Inserting Stearamide

31 Jan 2018 15:15:34,866 INFO : Inserting Stearyl-palmityldimethylammonium chloride

31 Jan 2018 15:15:34,872 INFO : Inserting Tetrabutylammonium ion

31 Jan 2018 15:15:34,897 INFO : Inserting Tributyl amine

31 Jan 2018 15:15:35,042 INFO : Inserting Tributyl phosphate

31 Jan 2018 15:15:35,049 INFO : Inserting Triethylamine

31 Jan 2018 15:15:35,055 INFO : Inserting Triphenyl phosphate 

31 Jan 2018 15:15:35,061 INFO : Inserting Triphenylphosphine oxide

31 Jan 2018 15:15:35,068 INFO : Inserting Tripropylamine

31 Jan 2018 15:15:35,074 INFO : Inserting tris(hydroxymethyl)aminomethane

31 Jan 2018 15:15:35,091 INFO : Inserting Triton 101 

31 Jan 2018 15:15:35,398 INFO : Inserting Triton 101 Reduced 

31 Jan 2018 15:15:35,501 INFO : Inserting Triton X-100

31 Jan 2018 15:15:35,801 INFO : Inserting Triton X-100 Reduced 

31 Jan 2018 15:15:35,904 INFO : Inserting Trityl cation

31 Jan 2018 15:15:35,911 INFO : Inserting Tween 20

31 Jan 2018 15:15:36,265 INFO : Inserting Tween 40

31 Jan 2018 15:15:36,620 INFO : Inserting Tween 60

31 Jan 2018 15:15:36,973 INFO : Inserting Tween 80

31 Jan 2018 15:15:37,328 INFO : Completed import of Skyline document from Molecular_Contaminants_MS1_Filtering_v4.1.sky.zip

31 Jan 2018 15:15:37,335 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Amgen%20-%20Molecular%20Contaminants/@files/export/xar/experiments_and_runs.xar.exploded/Run27054/Molecular_Contaminants_MS1_Filtering_v4.1.sky.zip into the system

31 Jan 2018 15:15:37,341 INFO : Done importing xar

31 Jan 2018 15:15:37,346 INFO : Loading wikis

31 Jan 2018 15:15:37,396 INFO : 0 wikis imported

31 Jan 2018 15:15:37,396 INFO : Done importing wikis

31 Jan 2018 15:15:37,402 INFO : Loading pages and webpart properties

31 Jan 2018 15:15:37,448 INFO : Done importing pages and webpart properties

31 Jan 2018 15:15:37,449 INFO : 

31 Jan 2018 15:15:37,449 INFO : Experiment import completed successfully.

31 Jan 2018 15:15:37,449 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

31 Jan 2018 15:15:37,464 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'

31 Jan 2018 15:15:37,464 INFO : 

31 Jan 2018 15:15:37,464 INFO : Finishing up experiment copy.

31 Jan 2018 15:15:37,468 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

31 Jan 2018 15:15:37,515 INFO : Updating access URL to point to the new copy of the data.

31 Jan 2018 15:15:37,552 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'