05 Jul 2023 19:43:43,872 INFO : Copying experiment "Development and analytical validation of a multiplexed targeted mass spectrometry assay to detect ovarian cancer protein biomarkers in sera" from folder /U of Minnesota - Thomas Lab/OC_PRM to /Panorama Public/2023/U of Minnesota Thomas Lab - OC_PRM

05 Jul 2023 19:43:43,873 INFO : =======================================

05 Jul 2023 19:43:43,896 DEBUG: Resetting Job ID: 76567b79-fdd4-103b-afc6-fea6ddf51ba4

05 Jul 2023 19:43:43,920 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

05 Jul 2023 19:43:43,920 INFO : 

05 Jul 2023 19:43:43,920 INFO : Exporting experiment.

05 Jul 2023 19:43:50,920 INFO : Exporting files metadata.

05 Jul 2023 19:43:50,920 DEBUG: [/U of Minnesota - Thomas Lab/OC_PRM]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U of Minnesota Thomas Lab - OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export

05 Jul 2023 19:43:50,922 INFO : 

05 Jul 2023 19:43:50,922 INFO : Experiment export completed successfully.

05 Jul 2023 19:43:50,922 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

05 Jul 2023 19:43:50,942 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

05 Jul 2023 19:43:50,942 INFO : 

05 Jul 2023 19:43:50,942 INFO : Importing experiment.

05 Jul 2023 19:43:50,943 DEBUG: [/Panorama Public/2023/U of Minnesota Thomas Lab - OC_PRM] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U of Minnesota Thomas Lab - OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export

05 Jul 2023 19:43:50,944 INFO : Loading folder properties (folder type, settings and active modules)

05 Jul 2023 19:43:50,944 DEBUG: [/Panorama Public/2023/U of Minnesota Thomas Lab - OC_PRM] Folder type: Targeted MS

05 Jul 2023 19:43:50,944 DEBUG: [/Panorama Public/2023/U of Minnesota Thomas Lab - OC_PRM] Active modules: PanoramaPublic, Wiki, Experiment, API, Query, Announcements, Pipeline, Assay, MS2, Core, Search, FileContent, Issues, TargetedMS

05 Jul 2023 19:43:51,003 INFO : Done importing folder properties (folder type, settings and active modules)

05 Jul 2023 19:43:51,004 INFO : Loading container specific module properties

05 Jul 2023 19:43:51,008 INFO : Done importing container specific module properties

05 Jul 2023 19:43:51,009 INFO : Loading etl definitions

05 Jul 2023 19:43:51,009 INFO : Loading wikis

05 Jul 2023 19:43:51,010 INFO : 0 wikis imported

05 Jul 2023 19:43:51,010 INFO : Done importing wikis

05 Jul 2023 19:43:51,010 INFO : Starting to copy files

05 Jul 2023 19:43:51,814 INFO : Copied 48 files

05 Jul 2023 19:43:51,815 INFO : Ensuring exp.data rows exist for imported files

05 Jul 2023 19:43:52,006 INFO : Starting Sample Type and Data Class import

05 Jul 2023 19:43:52,006 INFO : No types XAR file to process.

05 Jul 2023 19:43:52,006 INFO : Finished importing Sample Types and Data Classes

05 Jul 2023 19:43:52,007 INFO : Loading xar

05 Jul 2023 19:43:52,343 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,345 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,347 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,347 DEBUG: Protocol import complete

05 Jul 2023 19:43:52,348 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-11733:Development+and+analytical+validation+of+a+multiplexed+targeted+mass+spectrometry+assay+to+detect+ovarian+cancer+protein+biomarkers+in+sera'

05 Jul 2023 19:43:52,348 DEBUG: Experiment/Run group import complete

05 Jul 2023 19:43:52,356 DEBUG: Protocol action set import complete

05 Jul 2023 19:43:52,363 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,369 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11733:fcaad0a4-fd89-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,371 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11733:fcaad03f-fd89-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,371 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,374 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,374 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11733:928c24d6-fd8a-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,378 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,382 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11733:928c3311-fd8a-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,384 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11733:928c32de-fd8a-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,384 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,386 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,386 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11733:928c3bd6-fd8a-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,391 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,394 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11733:928c3d32-fd8a-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,397 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11733:928c3cff-fd8a-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,397 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,398 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,398 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11733:928c4568-fd8a-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,403 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,406 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11733:2272bd05-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,409 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11733:f4cdce77-fd8a-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,409 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,410 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,411 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11733:2272c5f6-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,415 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,418 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11733:2272c74c-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,421 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11733:2272c71b-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,421 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,422 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,422 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11733:2272cf7a-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,427 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,430 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11733:61158532-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,433 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11733:611584a3-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,433 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,434 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,435 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11733:61158d41-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,439 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,442 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11733:6115948b-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,445 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11733:61159446-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,445 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,446 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,446 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11733:61159db1-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,451 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip'

05 Jul 2023 19:43:52,454 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11733:61159f13-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,456 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11733:61159eac-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,456 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Core'

05 Jul 2023 19:43:52,458 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11733:TargetedMS.ImportSkyZip.Output'

05 Jul 2023 19:43:52,458 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11733:6115a16a-fd8b-103b-afc6-fea6ddf51ba4'

05 Jul 2023 19:43:52,459 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163337/CalCurves_2023-07-05_12-51-02/CalCurves.skyd into the system

05 Jul 2023 19:43:52,459 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163337/CalCurves_2023-07-05_12-51-02/CalCurves.skyd into the system

05 Jul 2023 19:43:52,459 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163337/CalCurves_2023-07-05_12-51-02.sky.zip into the system

05 Jul 2023 19:43:52,462 INFO : Starting import from CalCurves_2023-07-05_12-51-02.sky.zip

05 Jul 2023 19:43:52,467 INFO : Starting to import Skyline document from CalCurves_2023-07-05_12-51-02.sky.zip

05 Jul 2023 19:43:52,469 INFO : Expanding CalCurves.skyd

05 Jul 2023 19:43:52,524 INFO : Expanding CalCurves.sky.view

05 Jul 2023 19:43:52,525 INFO : Expanding CalCurves.sky

05 Jul 2023 19:43:52,543 INFO : Expanding CalCurves.skyl

05 Jul 2023 19:43:52,552 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

05 Jul 2023 19:43:52,558 INFO : 1% Done

05 Jul 2023 19:43:52,680 DEBUG: Starting to load chromatogram headers

05 Jul 2023 19:43:52,686 DEBUG: Done loading chromatogram headers

05 Jul 2023 19:43:52,938 INFO : Inserting sp|Q8WXI7|MUC16_HUMAN

05 Jul 2023 19:43:52,949 INFO : 2% Done

05 Jul 2023 19:43:53,033 INFO : 3% Done

05 Jul 2023 19:43:53,107 INFO : 5% Done

05 Jul 2023 19:43:53,181 INFO : 6% Done

05 Jul 2023 19:43:53,255 INFO : 7% Done

05 Jul 2023 19:43:53,321 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:43:53,321 INFO : Inserting sp|P15941|MUC1_HUMAN

05 Jul 2023 19:43:53,329 INFO : 8% Done

05 Jul 2023 19:43:53,396 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:43:53,396 INFO : Inserting sp|P22223|CADH3_HUMAN

05 Jul 2023 19:43:53,405 INFO : 10% Done

05 Jul 2023 19:43:53,550 INFO : 12% Done

05 Jul 2023 19:43:53,623 INFO : 14% Done

05 Jul 2023 19:43:53,765 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:43:53,766 INFO : Inserting sp|P08727|K1C19_HUMAN

05 Jul 2023 19:43:53,774 INFO : 16% Done

05 Jul 2023 19:43:53,845 INFO : 17% Done

05 Jul 2023 19:43:53,917 INFO : 18% Done

05 Jul 2023 19:43:53,990 INFO : 19% Done

05 Jul 2023 19:43:54,066 INFO : 21% Done

05 Jul 2023 19:43:54,133 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:43:54,133 INFO : Inserting sp|P15328|FOLR1_HUMAN

05 Jul 2023 19:43:54,138 INFO : 22% Done

05 Jul 2023 19:43:54,196 INFO : 23% Done

05 Jul 2023 19:43:54,268 INFO : 24% Done

05 Jul 2023 19:43:54,335 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:43:54,335 INFO : Inserting sp|Q99988|GDF15_HUMAN

05 Jul 2023 19:43:54,342 INFO : 26% Done

05 Jul 2023 19:43:54,483 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:54,483 INFO : Inserting sp|P08833|IBP1_HUMAN

05 Jul 2023 19:43:54,494 INFO : 28% Done

05 Jul 2023 19:43:54,567 INFO : 29% Done

05 Jul 2023 19:43:54,639 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:54,639 INFO : Inserting sp|P18065|IBP2_HUMAN

05 Jul 2023 19:43:54,648 INFO : 30% Done

05 Jul 2023 19:43:54,723 INFO : 31% Done

05 Jul 2023 19:43:54,790 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:54,790 INFO : Inserting sp|P05231|IL6_HUMAN

05 Jul 2023 19:43:54,797 INFO : 33% Done

05 Jul 2023 19:43:54,870 INFO : 34% Done

05 Jul 2023 19:43:54,943 INFO : 35% Done

05 Jul 2023 19:43:55,016 INFO : 37% Done

05 Jul 2023 19:43:55,084 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:43:55,085 INFO : Inserting sp|Q9UBX7|KLK11_HUMAN

05 Jul 2023 19:43:55,092 INFO : 38% Done

05 Jul 2023 19:43:55,167 INFO : 39% Done

05 Jul 2023 19:43:55,234 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:55,235 INFO : Inserting sp|Q92876|KLK6_HUMAN

05 Jul 2023 19:43:55,242 INFO : 40% Done

05 Jul 2023 19:43:55,315 INFO : 42% Done

05 Jul 2023 19:43:55,384 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:55,384 INFO : Inserting sp|Q13421|MSLN_HUMAN

05 Jul 2023 19:43:55,469 INFO : 44% Done

05 Jul 2023 19:43:55,555 INFO : 46% Done

05 Jul 2023 19:43:55,701 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:43:55,701 INFO : Inserting sp|Q96NY8|NECT4_HUMAN

05 Jul 2023 19:43:55,711 INFO : 48% Done

05 Jul 2023 19:43:55,785 INFO : 49% Done

05 Jul 2023 19:43:55,860 INFO : 50% Done

05 Jul 2023 19:43:55,948 INFO : 51% Done

05 Jul 2023 19:43:56,022 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:43:56,022 INFO : Inserting sp|P10451|OSTP_HUMAN

05 Jul 2023 19:43:56,031 INFO : 53% Done

05 Jul 2023 19:43:56,109 INFO : 54% Done

05 Jul 2023 19:43:56,187 INFO : 55% Done

05 Jul 2023 19:43:56,259 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:43:56,259 INFO : Inserting sp|P01236|PRL_HUMAN

05 Jul 2023 19:43:56,268 INFO : 56% Done

05 Jul 2023 19:43:56,345 INFO : 58% Done

05 Jul 2023 19:43:56,414 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:56,414 INFO : Inserting sp|Q16651|PRSS8_HUMAN

05 Jul 2023 19:43:56,424 INFO : 59% Done

05 Jul 2023 19:43:56,507 INFO : 60% Done

05 Jul 2023 19:43:56,585 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:56,585 INFO : Inserting sp|P04278|SHBG_HUMAN

05 Jul 2023 19:43:56,593 INFO : 62% Done

05 Jul 2023 19:43:56,747 INFO : 64% Done

05 Jul 2023 19:43:56,818 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:43:56,819 INFO : Inserting sp|P01033|TIMP1_HUMAN

05 Jul 2023 19:43:56,827 INFO : 65% Done

05 Jul 2023 19:43:56,901 INFO : 66% Done

05 Jul 2023 19:43:56,977 INFO : 68% Done

05 Jul 2023 19:43:57,044 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:43:57,044 INFO : Inserting sp|P02771|FETA_HUMAN

05 Jul 2023 19:43:57,052 INFO : 69% Done

05 Jul 2023 19:43:57,127 INFO : 70% Done

05 Jul 2023 19:43:57,195 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:57,195 INFO : Inserting sp|P09038|FGF2_HUMAN

05 Jul 2023 19:43:57,202 INFO : 71% Done

05 Jul 2023 19:43:57,276 INFO : 73% Done

05 Jul 2023 19:43:57,342 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:57,342 INFO : Inserting sp|P19883|FST_HUMAN

05 Jul 2023 19:43:57,349 INFO : 74% Done

05 Jul 2023 19:43:57,421 INFO : 75% Done

05 Jul 2023 19:43:57,490 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:43:57,491 INFO : Inserting sp|P25445|TNR6_HUMAN

05 Jul 2023 19:43:57,499 INFO : 76% Done

05 Jul 2023 19:43:57,568 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:43:57,568 INFO : Inserting sp|P35968|VGFR2_HUMAN

05 Jul 2023 19:43:57,576 INFO : 78% Done

05 Jul 2023 19:43:57,724 INFO : 80% Done

05 Jul 2023 19:43:57,793 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:43:57,794 INFO : Done parsing Skyline document.

05 Jul 2023 19:43:57,890 INFO : No group comparisons found.

05 Jul 2023 19:43:57,890 INFO : Calculating calibration curves

05 Jul 2023 19:43:57,891 DEBUG: Calculating calibration curve for sp|Q8WXI7|MUC16_HUMAN, 1 of 23

05 Jul 2023 19:43:57,962 INFO : 81% Done

05 Jul 2023 19:43:57,962 DEBUG: Calculating calibration curve for sp|P15941|MUC1_HUMAN, 2 of 23

05 Jul 2023 19:43:57,977 INFO : 82% Done

05 Jul 2023 19:43:57,977 DEBUG: Calculating calibration curve for sp|P22223|CADH3_HUMAN, 3 of 23

05 Jul 2023 19:43:58,045 DEBUG: Calculating calibration curve for sp|P08727|K1C19_HUMAN, 4 of 23

05 Jul 2023 19:43:58,109 INFO : 83% Done

05 Jul 2023 19:43:58,109 DEBUG: Calculating calibration curve for sp|P15328|FOLR1_HUMAN, 5 of 23

05 Jul 2023 19:43:58,145 INFO : 84% Done

05 Jul 2023 19:43:58,145 DEBUG: Calculating calibration curve for sp|Q99988|GDF15_HUMAN, 6 of 23

05 Jul 2023 19:43:58,171 INFO : 85% Done

05 Jul 2023 19:43:58,171 DEBUG: Calculating calibration curve for sp|P08833|IBP1_HUMAN, 7 of 23

05 Jul 2023 19:43:58,195 DEBUG: Calculating calibration curve for sp|P18065|IBP2_HUMAN, 8 of 23

05 Jul 2023 19:43:58,221 INFO : 86% Done

05 Jul 2023 19:43:58,221 DEBUG: Calculating calibration curve for sp|P05231|IL6_HUMAN, 9 of 23

05 Jul 2023 19:43:58,272 INFO : 87% Done

05 Jul 2023 19:43:58,272 DEBUG: Calculating calibration curve for sp|Q9UBX7|KLK11_HUMAN, 10 of 23

05 Jul 2023 19:43:58,298 INFO : 88% Done

05 Jul 2023 19:43:58,298 DEBUG: Calculating calibration curve for sp|Q92876|KLK6_HUMAN, 11 of 23

05 Jul 2023 19:43:58,325 INFO : 89% Done

05 Jul 2023 19:43:58,325 DEBUG: Calculating calibration curve for sp|Q13421|MSLN_HUMAN, 12 of 23

05 Jul 2023 19:43:58,375 DEBUG: Calculating calibration curve for sp|Q96NY8|NECT4_HUMAN, 13 of 23

05 Jul 2023 19:43:58,425 INFO : 90% Done

05 Jul 2023 19:43:58,425 DEBUG: Calculating calibration curve for sp|P10451|OSTP_HUMAN, 14 of 23

05 Jul 2023 19:43:58,467 INFO : 91% Done

05 Jul 2023 19:43:58,467 DEBUG: Calculating calibration curve for sp|P01236|PRL_HUMAN, 15 of 23

05 Jul 2023 19:43:58,494 INFO : 92% Done

05 Jul 2023 19:43:58,494 DEBUG: Calculating calibration curve for sp|Q16651|PRSS8_HUMAN, 16 of 23

05 Jul 2023 19:43:58,522 INFO : 93% Done

05 Jul 2023 19:43:58,522 DEBUG: Calculating calibration curve for sp|P04278|SHBG_HUMAN, 17 of 23

05 Jul 2023 19:43:58,561 DEBUG: Calculating calibration curve for sp|P01033|TIMP1_HUMAN, 18 of 23

05 Jul 2023 19:43:58,603 INFO : 94% Done

05 Jul 2023 19:43:58,603 DEBUG: Calculating calibration curve for sp|P02771|FETA_HUMAN, 19 of 23

05 Jul 2023 19:43:58,631 INFO : 95% Done

05 Jul 2023 19:43:58,631 DEBUG: Calculating calibration curve for sp|P09038|FGF2_HUMAN, 20 of 23

05 Jul 2023 19:43:58,658 INFO : 96% Done

05 Jul 2023 19:43:58,658 DEBUG: Calculating calibration curve for sp|P19883|FST_HUMAN, 21 of 23

05 Jul 2023 19:43:58,686 DEBUG: Calculating calibration curve for sp|P25445|TNR6_HUMAN, 22 of 23

05 Jul 2023 19:43:58,726 INFO : 97% Done

05 Jul 2023 19:43:58,726 DEBUG: Calculating calibration curve for sp|P35968|VGFR2_HUMAN, 23 of 23

05 Jul 2023 19:43:58,775 INFO : 98% Done

05 Jul 2023 19:43:59,142 INFO : Done calculating calibration curves.

05 Jul 2023 19:44:03,246 INFO : Creating and populating temp tables for Proportion values

05 Jul 2023 19:44:03,356 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

05 Jul 2023 19:44:03,590 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

05 Jul 2023 19:44:03,670 INFO : Cleaning up temp tables

05 Jul 2023 19:44:03,913 INFO : Completed import of Skyline document from CalCurves_2023-07-05_12-51-02.sky.zip

05 Jul 2023 19:44:03,915 INFO : 100% Done

05 Jul 2023 19:44:03,920 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163337/CalCurves_2023-07-05_12-51-02.sky.zip into the system

05 Jul 2023 19:44:03,920 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163338/Repeatability_Day1_2023-07-05_12-53-16/Repeatability_Day1.skyd into the system

05 Jul 2023 19:44:03,921 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163338/Repeatability_Day1_2023-07-05_12-53-16/Repeatability_Day1.skyd into the system

05 Jul 2023 19:44:03,921 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163338/Repeatability_Day1_2023-07-05_12-53-16.sky.zip into the system

05 Jul 2023 19:44:03,922 INFO : Starting import from Repeatability_Day1_2023-07-05_12-53-16.sky.zip

05 Jul 2023 19:44:03,925 INFO : Starting to import Skyline document from Repeatability_Day1_2023-07-05_12-53-16.sky.zip

05 Jul 2023 19:44:03,926 INFO : Expanding Repeatability_Day1.skyd

05 Jul 2023 19:44:03,935 INFO : Expanding Repeatability_Day1.sky.view

05 Jul 2023 19:44:03,935 INFO : Expanding Repeatability_Day1.sky

05 Jul 2023 19:44:03,940 INFO : Expanding Repeatability_Day1.skyl

05 Jul 2023 19:44:03,960 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

05 Jul 2023 19:44:03,966 INFO : 1% Done

05 Jul 2023 19:44:03,986 DEBUG: Starting to load chromatogram headers

05 Jul 2023 19:44:03,987 DEBUG: Done loading chromatogram headers

05 Jul 2023 19:44:04,209 INFO : 2% Done

05 Jul 2023 19:44:04,209 INFO : Inserting sp|Q8WXI7|MUC16_HUMAN

05 Jul 2023 19:44:04,243 INFO : 4% Done

05 Jul 2023 19:44:04,261 INFO : 5% Done

05 Jul 2023 19:44:04,281 INFO : 6% Done

05 Jul 2023 19:44:04,301 INFO : 7% Done

05 Jul 2023 19:44:04,319 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:04,320 INFO : 8% Done

05 Jul 2023 19:44:04,320 INFO : Inserting sp|P15941|MUC1_HUMAN

05 Jul 2023 19:44:04,324 INFO : 9% Done

05 Jul 2023 19:44:04,341 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:04,341 INFO : Inserting sp|P22223|CADH3_HUMAN

05 Jul 2023 19:44:04,345 INFO : 10% Done

05 Jul 2023 19:44:04,364 INFO : 11% Done

05 Jul 2023 19:44:04,382 INFO : 13% Done

05 Jul 2023 19:44:04,400 INFO : 14% Done

05 Jul 2023 19:44:04,419 INFO : 15% Done

05 Jul 2023 19:44:04,435 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:04,436 INFO : Inserting sp|P08727|K1C19_HUMAN

05 Jul 2023 19:44:04,439 INFO : 16% Done

05 Jul 2023 19:44:04,458 INFO : 18% Done

05 Jul 2023 19:44:04,494 INFO : 20% Done

05 Jul 2023 19:44:04,513 INFO : 21% Done

05 Jul 2023 19:44:04,531 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:04,531 INFO : Inserting sp|P15328|FOLR1_HUMAN

05 Jul 2023 19:44:04,535 INFO : 22% Done

05 Jul 2023 19:44:04,550 INFO : 23% Done

05 Jul 2023 19:44:04,569 INFO : 25% Done

05 Jul 2023 19:44:04,586 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:04,586 INFO : Inserting sp|Q99988|GDF15_HUMAN

05 Jul 2023 19:44:04,590 INFO : 26% Done

05 Jul 2023 19:44:04,608 INFO : 27% Done

05 Jul 2023 19:44:04,625 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:04,625 INFO : Inserting sp|P08833|IBP1_HUMAN

05 Jul 2023 19:44:04,628 INFO : 28% Done

05 Jul 2023 19:44:04,647 INFO : 30% Done

05 Jul 2023 19:44:04,664 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:04,664 INFO : Inserting sp|P18065|IBP2_HUMAN

05 Jul 2023 19:44:04,685 INFO : 32% Done

05 Jul 2023 19:44:04,702 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:04,702 INFO : Inserting sp|P05231|IL6_HUMAN

05 Jul 2023 19:44:04,705 INFO : 33% Done

05 Jul 2023 19:44:04,725 INFO : 34% Done

05 Jul 2023 19:44:04,743 INFO : 35% Done

05 Jul 2023 19:44:04,762 INFO : 37% Done

05 Jul 2023 19:44:04,779 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:04,779 INFO : Inserting sp|Q9UBX7|KLK11_HUMAN

05 Jul 2023 19:44:04,783 INFO : 38% Done

05 Jul 2023 19:44:04,802 INFO : 39% Done

05 Jul 2023 19:44:04,818 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:04,819 INFO : Inserting sp|Q92876|KLK6_HUMAN

05 Jul 2023 19:44:04,822 INFO : 41% Done

05 Jul 2023 19:44:04,841 INFO : 42% Done

05 Jul 2023 19:44:04,858 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:04,858 INFO : Inserting sp|Q13421|MSLN_HUMAN

05 Jul 2023 19:44:04,862 INFO : 43% Done

05 Jul 2023 19:44:04,880 INFO : 44% Done

05 Jul 2023 19:44:04,899 INFO : 46% Done

05 Jul 2023 19:44:04,934 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:04,934 INFO : Inserting sp|Q96NY8|NECT4_HUMAN

05 Jul 2023 19:44:04,938 INFO : 48% Done

05 Jul 2023 19:44:04,958 INFO : 49% Done

05 Jul 2023 19:44:04,977 INFO : 50% Done

05 Jul 2023 19:44:04,997 INFO : 52% Done

05 Jul 2023 19:44:05,014 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:05,014 INFO : Inserting sp|P10451|OSTP_HUMAN

05 Jul 2023 19:44:05,018 INFO : 53% Done

05 Jul 2023 19:44:05,036 INFO : 54% Done

05 Jul 2023 19:44:05,056 INFO : 55% Done

05 Jul 2023 19:44:05,073 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:05,073 INFO : Inserting sp|P01236|PRL_HUMAN

05 Jul 2023 19:44:05,077 INFO : 57% Done

05 Jul 2023 19:44:05,096 INFO : 58% Done

05 Jul 2023 19:44:05,114 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:05,114 INFO : Inserting sp|Q16651|PRSS8_HUMAN

05 Jul 2023 19:44:05,118 INFO : 59% Done

05 Jul 2023 19:44:05,137 INFO : 60% Done

05 Jul 2023 19:44:05,154 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:05,155 INFO : 61% Done

05 Jul 2023 19:44:05,155 INFO : Inserting sp|P04278|SHBG_HUMAN

05 Jul 2023 19:44:05,158 INFO : 62% Done

05 Jul 2023 19:44:05,177 INFO : 63% Done

05 Jul 2023 19:44:05,196 INFO : 64% Done

05 Jul 2023 19:44:05,213 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:05,213 INFO : Inserting sp|P01033|TIMP1_HUMAN

05 Jul 2023 19:44:05,217 INFO : 66% Done

05 Jul 2023 19:44:05,252 INFO : 68% Done

05 Jul 2023 19:44:05,269 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:05,269 INFO : Inserting sp|P02771|FETA_HUMAN

05 Jul 2023 19:44:05,273 INFO : 69% Done

05 Jul 2023 19:44:05,291 INFO : 70% Done

05 Jul 2023 19:44:05,308 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:05,308 INFO : Inserting sp|P09038|FGF2_HUMAN

05 Jul 2023 19:44:05,312 INFO : 71% Done

05 Jul 2023 19:44:05,330 INFO : 73% Done

05 Jul 2023 19:44:05,347 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:05,347 INFO : Inserting sp|P19883|FST_HUMAN

05 Jul 2023 19:44:05,351 INFO : 74% Done

05 Jul 2023 19:44:05,370 INFO : 75% Done

05 Jul 2023 19:44:05,388 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:05,388 INFO : Inserting sp|P25445|TNR6_HUMAN

05 Jul 2023 19:44:05,392 INFO : 77% Done

05 Jul 2023 19:44:05,408 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:05,409 INFO : Inserting sp|P35968|VGFR2_HUMAN

05 Jul 2023 19:44:05,412 INFO : 78% Done

05 Jul 2023 19:44:05,431 INFO : 79% Done

05 Jul 2023 19:44:05,449 INFO : 80% Done

05 Jul 2023 19:44:05,466 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:05,467 INFO : Done parsing Skyline document.

05 Jul 2023 19:44:05,559 INFO : No group comparisons found.

05 Jul 2023 19:44:05,559 INFO : Calculating calibration curves

05 Jul 2023 19:44:05,559 DEBUG: Calculating calibration curve for sp|Q8WXI7|MUC16_HUMAN, 1 of 23

05 Jul 2023 19:44:05,607 INFO : 81% Done

05 Jul 2023 19:44:05,607 DEBUG: Calculating calibration curve for sp|P15941|MUC1_HUMAN, 2 of 23

05 Jul 2023 19:44:05,617 INFO : 82% Done

05 Jul 2023 19:44:05,617 DEBUG: Calculating calibration curve for sp|P22223|CADH3_HUMAN, 3 of 23

05 Jul 2023 19:44:05,662 DEBUG: Calculating calibration curve for sp|P08727|K1C19_HUMAN, 4 of 23

05 Jul 2023 19:44:05,709 INFO : 83% Done

05 Jul 2023 19:44:05,709 DEBUG: Calculating calibration curve for sp|P15328|FOLR1_HUMAN, 5 of 23

05 Jul 2023 19:44:05,735 INFO : 84% Done

05 Jul 2023 19:44:05,735 DEBUG: Calculating calibration curve for sp|Q99988|GDF15_HUMAN, 6 of 23

05 Jul 2023 19:44:05,753 INFO : 85% Done

05 Jul 2023 19:44:05,753 DEBUG: Calculating calibration curve for sp|P08833|IBP1_HUMAN, 7 of 23

05 Jul 2023 19:44:05,770 DEBUG: Calculating calibration curve for sp|P18065|IBP2_HUMAN, 8 of 23

05 Jul 2023 19:44:05,788 INFO : 86% Done

05 Jul 2023 19:44:05,788 DEBUG: Calculating calibration curve for sp|P05231|IL6_HUMAN, 9 of 23

05 Jul 2023 19:44:05,823 INFO : 87% Done

05 Jul 2023 19:44:05,823 DEBUG: Calculating calibration curve for sp|Q9UBX7|KLK11_HUMAN, 10 of 23

05 Jul 2023 19:44:05,843 INFO : 88% Done

05 Jul 2023 19:44:05,843 DEBUG: Calculating calibration curve for sp|Q92876|KLK6_HUMAN, 11 of 23

05 Jul 2023 19:44:05,861 INFO : 89% Done

05 Jul 2023 19:44:05,861 DEBUG: Calculating calibration curve for sp|Q13421|MSLN_HUMAN, 12 of 23

05 Jul 2023 19:44:05,896 DEBUG: Calculating calibration curve for sp|Q96NY8|NECT4_HUMAN, 13 of 23

05 Jul 2023 19:44:05,931 INFO : 90% Done

05 Jul 2023 19:44:05,931 DEBUG: Calculating calibration curve for sp|P10451|OSTP_HUMAN, 14 of 23

05 Jul 2023 19:44:05,957 INFO : 91% Done

05 Jul 2023 19:44:05,957 DEBUG: Calculating calibration curve for sp|P01236|PRL_HUMAN, 15 of 23

05 Jul 2023 19:44:05,975 INFO : 92% Done

05 Jul 2023 19:44:05,975 DEBUG: Calculating calibration curve for sp|Q16651|PRSS8_HUMAN, 16 of 23

05 Jul 2023 19:44:05,993 INFO : 93% Done

05 Jul 2023 19:44:05,993 DEBUG: Calculating calibration curve for sp|P04278|SHBG_HUMAN, 17 of 23

05 Jul 2023 19:44:06,019 DEBUG: Calculating calibration curve for sp|P01033|TIMP1_HUMAN, 18 of 23

05 Jul 2023 19:44:06,046 INFO : 94% Done

05 Jul 2023 19:44:06,046 DEBUG: Calculating calibration curve for sp|P02771|FETA_HUMAN, 19 of 23

05 Jul 2023 19:44:06,063 INFO : 95% Done

05 Jul 2023 19:44:06,064 DEBUG: Calculating calibration curve for sp|P09038|FGF2_HUMAN, 20 of 23

05 Jul 2023 19:44:06,081 INFO : 96% Done

05 Jul 2023 19:44:06,081 DEBUG: Calculating calibration curve for sp|P19883|FST_HUMAN, 21 of 23

05 Jul 2023 19:44:06,098 DEBUG: Calculating calibration curve for sp|P25445|TNR6_HUMAN, 22 of 23

05 Jul 2023 19:44:06,108 INFO : 97% Done

05 Jul 2023 19:44:06,108 DEBUG: Calculating calibration curve for sp|P35968|VGFR2_HUMAN, 23 of 23

05 Jul 2023 19:44:06,135 INFO : 98% Done

05 Jul 2023 19:44:06,145 INFO : Done calculating calibration curves.

05 Jul 2023 19:44:11,336 INFO : Creating and populating temp tables for Proportion values

05 Jul 2023 19:44:11,419 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

05 Jul 2023 19:44:11,468 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

05 Jul 2023 19:44:11,485 INFO : Cleaning up temp tables

05 Jul 2023 19:44:11,769 INFO : Completed import of Skyline document from Repeatability_Day1_2023-07-05_12-53-16.sky.zip

05 Jul 2023 19:44:11,771 INFO : 100% Done

05 Jul 2023 19:44:11,776 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163338/Repeatability_Day1_2023-07-05_12-53-16.sky.zip into the system

05 Jul 2023 19:44:11,776 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163339/Repeatability_Day2_2023-07-05_12-53-47/Repeatability_Day2.skyd into the system

05 Jul 2023 19:44:11,776 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163339/Repeatability_Day2_2023-07-05_12-53-47/Repeatability_Day2.skyd into the system

05 Jul 2023 19:44:11,776 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163339/Repeatability_Day2_2023-07-05_12-53-47.sky.zip into the system

05 Jul 2023 19:44:11,777 INFO : Starting import from Repeatability_Day2_2023-07-05_12-53-47.sky.zip

05 Jul 2023 19:44:11,779 INFO : Starting to import Skyline document from Repeatability_Day2_2023-07-05_12-53-47.sky.zip

05 Jul 2023 19:44:11,779 INFO : Expanding Repeatability_Day2.skyd

05 Jul 2023 19:44:11,789 INFO : Expanding Repeatability_Day2.sky.view

05 Jul 2023 19:44:11,789 INFO : Expanding Repeatability_Day2.sky

05 Jul 2023 19:44:11,794 INFO : Expanding Repeatability_Day2.skyl

05 Jul 2023 19:44:11,804 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

05 Jul 2023 19:44:11,807 INFO : 1% Done

05 Jul 2023 19:44:11,815 DEBUG: Starting to load chromatogram headers

05 Jul 2023 19:44:11,816 DEBUG: Done loading chromatogram headers

05 Jul 2023 19:44:11,995 INFO : 2% Done

05 Jul 2023 19:44:11,995 INFO : Inserting sp|Q8WXI7|MUC16_HUMAN

05 Jul 2023 19:44:12,019 INFO : 4% Done

05 Jul 2023 19:44:12,038 INFO : 5% Done

05 Jul 2023 19:44:12,056 INFO : 6% Done

05 Jul 2023 19:44:12,074 INFO : 7% Done

05 Jul 2023 19:44:12,091 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:12,092 INFO : 8% Done

05 Jul 2023 19:44:12,092 INFO : Inserting sp|P15941|MUC1_HUMAN

05 Jul 2023 19:44:12,096 INFO : 9% Done

05 Jul 2023 19:44:12,112 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:12,112 INFO : Inserting sp|P22223|CADH3_HUMAN

05 Jul 2023 19:44:12,116 INFO : 10% Done

05 Jul 2023 19:44:12,134 INFO : 11% Done

05 Jul 2023 19:44:12,153 INFO : 13% Done

05 Jul 2023 19:44:12,171 INFO : 14% Done

05 Jul 2023 19:44:12,190 INFO : 15% Done

05 Jul 2023 19:44:12,207 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:12,207 INFO : Inserting sp|P08727|K1C19_HUMAN

05 Jul 2023 19:44:12,211 INFO : 17% Done

05 Jul 2023 19:44:12,229 INFO : 18% Done

05 Jul 2023 19:44:12,265 INFO : 20% Done

05 Jul 2023 19:44:12,283 INFO : 21% Done

05 Jul 2023 19:44:12,300 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:12,300 INFO : Inserting sp|P15328|FOLR1_HUMAN

05 Jul 2023 19:44:12,304 INFO : 22% Done

05 Jul 2023 19:44:12,319 INFO : 23% Done

05 Jul 2023 19:44:12,338 INFO : 25% Done

05 Jul 2023 19:44:12,354 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:12,355 INFO : Inserting sp|Q99988|GDF15_HUMAN

05 Jul 2023 19:44:12,358 INFO : 26% Done

05 Jul 2023 19:44:12,377 INFO : 27% Done

05 Jul 2023 19:44:12,394 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:12,394 INFO : Inserting sp|P08833|IBP1_HUMAN

05 Jul 2023 19:44:12,398 INFO : 28% Done

05 Jul 2023 19:44:12,416 INFO : 30% Done

05 Jul 2023 19:44:12,434 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:12,434 INFO : Inserting sp|P18065|IBP2_HUMAN

05 Jul 2023 19:44:12,455 INFO : 32% Done

05 Jul 2023 19:44:12,472 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:12,473 INFO : Inserting sp|P05231|IL6_HUMAN

05 Jul 2023 19:44:12,476 INFO : 33% Done

05 Jul 2023 19:44:12,495 INFO : 34% Done

05 Jul 2023 19:44:12,514 INFO : 35% Done

05 Jul 2023 19:44:12,532 INFO : 37% Done

05 Jul 2023 19:44:12,549 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:12,549 INFO : Inserting sp|Q9UBX7|KLK11_HUMAN

05 Jul 2023 19:44:12,552 INFO : 38% Done

05 Jul 2023 19:44:12,571 INFO : 39% Done

05 Jul 2023 19:44:12,588 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:12,588 INFO : Inserting sp|Q92876|KLK6_HUMAN

05 Jul 2023 19:44:12,592 INFO : 41% Done

05 Jul 2023 19:44:12,610 INFO : 42% Done

05 Jul 2023 19:44:12,628 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:12,628 INFO : Inserting sp|Q13421|MSLN_HUMAN

05 Jul 2023 19:44:12,632 INFO : 43% Done

05 Jul 2023 19:44:12,651 INFO : 44% Done

05 Jul 2023 19:44:12,670 INFO : 46% Done

05 Jul 2023 19:44:12,689 INFO : 47% Done

05 Jul 2023 19:44:12,707 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:12,707 INFO : Inserting sp|Q96NY8|NECT4_HUMAN

05 Jul 2023 19:44:12,711 INFO : 48% Done

05 Jul 2023 19:44:12,729 INFO : 50% Done

05 Jul 2023 19:44:12,766 INFO : 52% Done

05 Jul 2023 19:44:12,783 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:12,783 INFO : Inserting sp|P10451|OSTP_HUMAN

05 Jul 2023 19:44:12,787 INFO : 53% Done

05 Jul 2023 19:44:12,805 INFO : 54% Done

05 Jul 2023 19:44:12,824 INFO : 55% Done

05 Jul 2023 19:44:12,841 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:12,841 INFO : Inserting sp|P01236|PRL_HUMAN

05 Jul 2023 19:44:12,845 INFO : 57% Done

05 Jul 2023 19:44:12,864 INFO : 58% Done

05 Jul 2023 19:44:12,881 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:12,881 INFO : Inserting sp|Q16651|PRSS8_HUMAN

05 Jul 2023 19:44:12,885 INFO : 59% Done

05 Jul 2023 19:44:12,903 INFO : 60% Done

05 Jul 2023 19:44:12,920 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:12,921 INFO : 61% Done

05 Jul 2023 19:44:12,921 INFO : Inserting sp|P04278|SHBG_HUMAN

05 Jul 2023 19:44:12,925 INFO : 62% Done

05 Jul 2023 19:44:12,943 INFO : 63% Done

05 Jul 2023 19:44:12,962 INFO : 64% Done

05 Jul 2023 19:44:12,978 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:12,978 INFO : Inserting sp|P01033|TIMP1_HUMAN

05 Jul 2023 19:44:12,982 INFO : 66% Done

05 Jul 2023 19:44:13,017 INFO : 68% Done

05 Jul 2023 19:44:13,034 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:13,034 INFO : Inserting sp|P02771|FETA_HUMAN

05 Jul 2023 19:44:13,038 INFO : 69% Done

05 Jul 2023 19:44:13,058 INFO : 70% Done

05 Jul 2023 19:44:13,075 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:13,075 INFO : Inserting sp|P09038|FGF2_HUMAN

05 Jul 2023 19:44:13,079 INFO : 71% Done

05 Jul 2023 19:44:13,097 INFO : 73% Done

05 Jul 2023 19:44:13,114 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:13,114 INFO : Inserting sp|P19883|FST_HUMAN

05 Jul 2023 19:44:13,118 INFO : 74% Done

05 Jul 2023 19:44:13,136 INFO : 75% Done

05 Jul 2023 19:44:13,153 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:13,153 INFO : Inserting sp|P25445|TNR6_HUMAN

05 Jul 2023 19:44:13,157 INFO : 76% Done

05 Jul 2023 19:44:13,174 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:13,175 INFO : 77% Done

05 Jul 2023 19:44:13,175 INFO : Inserting sp|P35968|VGFR2_HUMAN

05 Jul 2023 19:44:13,178 INFO : 78% Done

05 Jul 2023 19:44:13,196 INFO : 79% Done

05 Jul 2023 19:44:13,215 INFO : 80% Done

05 Jul 2023 19:44:13,232 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:13,232 INFO : Done parsing Skyline document.

05 Jul 2023 19:44:13,287 INFO : No group comparisons found.

05 Jul 2023 19:44:13,287 INFO : Calculating calibration curves

05 Jul 2023 19:44:13,288 DEBUG: Calculating calibration curve for sp|Q8WXI7|MUC16_HUMAN, 1 of 23

05 Jul 2023 19:44:13,334 INFO : 81% Done

05 Jul 2023 19:44:13,334 DEBUG: Calculating calibration curve for sp|P15941|MUC1_HUMAN, 2 of 23

05 Jul 2023 19:44:13,345 INFO : 82% Done

05 Jul 2023 19:44:13,345 DEBUG: Calculating calibration curve for sp|P22223|CADH3_HUMAN, 3 of 23

05 Jul 2023 19:44:13,389 DEBUG: Calculating calibration curve for sp|P08727|K1C19_HUMAN, 4 of 23

05 Jul 2023 19:44:13,434 INFO : 83% Done

05 Jul 2023 19:44:13,434 DEBUG: Calculating calibration curve for sp|P15328|FOLR1_HUMAN, 5 of 23

05 Jul 2023 19:44:13,459 INFO : 84% Done

05 Jul 2023 19:44:13,459 DEBUG: Calculating calibration curve for sp|Q99988|GDF15_HUMAN, 6 of 23

05 Jul 2023 19:44:13,477 INFO : 85% Done

05 Jul 2023 19:44:13,477 DEBUG: Calculating calibration curve for sp|P08833|IBP1_HUMAN, 7 of 23

05 Jul 2023 19:44:13,494 DEBUG: Calculating calibration curve for sp|P18065|IBP2_HUMAN, 8 of 23

05 Jul 2023 19:44:13,513 INFO : 86% Done

05 Jul 2023 19:44:13,513 DEBUG: Calculating calibration curve for sp|P05231|IL6_HUMAN, 9 of 23

05 Jul 2023 19:44:13,549 INFO : 87% Done

05 Jul 2023 19:44:13,549 DEBUG: Calculating calibration curve for sp|Q9UBX7|KLK11_HUMAN, 10 of 23

05 Jul 2023 19:44:13,568 INFO : 88% Done

05 Jul 2023 19:44:13,568 DEBUG: Calculating calibration curve for sp|Q92876|KLK6_HUMAN, 11 of 23

05 Jul 2023 19:44:13,586 INFO : 89% Done

05 Jul 2023 19:44:13,586 DEBUG: Calculating calibration curve for sp|Q13421|MSLN_HUMAN, 12 of 23

05 Jul 2023 19:44:13,621 DEBUG: Calculating calibration curve for sp|Q96NY8|NECT4_HUMAN, 13 of 23

05 Jul 2023 19:44:13,656 INFO : 90% Done

05 Jul 2023 19:44:13,656 DEBUG: Calculating calibration curve for sp|P10451|OSTP_HUMAN, 14 of 23

05 Jul 2023 19:44:13,682 INFO : 91% Done

05 Jul 2023 19:44:13,682 DEBUG: Calculating calibration curve for sp|P01236|PRL_HUMAN, 15 of 23

05 Jul 2023 19:44:13,700 INFO : 92% Done

05 Jul 2023 19:44:13,700 DEBUG: Calculating calibration curve for sp|Q16651|PRSS8_HUMAN, 16 of 23

05 Jul 2023 19:44:13,718 INFO : 93% Done

05 Jul 2023 19:44:13,718 DEBUG: Calculating calibration curve for sp|P04278|SHBG_HUMAN, 17 of 23

05 Jul 2023 19:44:13,745 DEBUG: Calculating calibration curve for sp|P01033|TIMP1_HUMAN, 18 of 23

05 Jul 2023 19:44:13,771 INFO : 94% Done

05 Jul 2023 19:44:13,771 DEBUG: Calculating calibration curve for sp|P02771|FETA_HUMAN, 19 of 23

05 Jul 2023 19:44:13,789 INFO : 95% Done

05 Jul 2023 19:44:13,789 DEBUG: Calculating calibration curve for sp|P09038|FGF2_HUMAN, 20 of 23

05 Jul 2023 19:44:13,808 INFO : 96% Done

05 Jul 2023 19:44:13,808 DEBUG: Calculating calibration curve for sp|P19883|FST_HUMAN, 21 of 23

05 Jul 2023 19:44:13,825 DEBUG: Calculating calibration curve for sp|P25445|TNR6_HUMAN, 22 of 23

05 Jul 2023 19:44:13,835 INFO : 97% Done

05 Jul 2023 19:44:13,835 DEBUG: Calculating calibration curve for sp|P35968|VGFR2_HUMAN, 23 of 23

05 Jul 2023 19:44:13,863 INFO : 98% Done

05 Jul 2023 19:44:13,871 INFO : Done calculating calibration curves.

05 Jul 2023 19:44:18,734 INFO : Creating and populating temp tables for Proportion values

05 Jul 2023 19:44:18,809 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

05 Jul 2023 19:44:18,860 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

05 Jul 2023 19:44:18,878 INFO : Cleaning up temp tables

05 Jul 2023 19:44:19,158 INFO : Completed import of Skyline document from Repeatability_Day2_2023-07-05_12-53-47.sky.zip

05 Jul 2023 19:44:19,162 INFO : 100% Done

05 Jul 2023 19:44:19,165 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163339/Repeatability_Day2_2023-07-05_12-53-47.sky.zip into the system

05 Jul 2023 19:44:19,165 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163341/Repeatability_Day3_2023-07-05_12-55-02/Repeatability_Day3.skyd into the system

05 Jul 2023 19:44:19,165 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163341/Repeatability_Day3_2023-07-05_12-55-02/Repeatability_Day3.skyd into the system

05 Jul 2023 19:44:19,165 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163341/Repeatability_Day3_2023-07-05_12-55-02.sky.zip into the system

05 Jul 2023 19:44:19,166 INFO : Starting import from Repeatability_Day3_2023-07-05_12-55-02.sky.zip

05 Jul 2023 19:44:19,168 INFO : Starting to import Skyline document from Repeatability_Day3_2023-07-05_12-55-02.sky.zip

05 Jul 2023 19:44:19,169 INFO : Expanding Repeatability_Day3.skyd

05 Jul 2023 19:44:19,178 INFO : Expanding Repeatability_Day3.sky.view

05 Jul 2023 19:44:19,178 INFO : Expanding Repeatability_Day3.sky

05 Jul 2023 19:44:19,183 INFO : Expanding Repeatability_Day3.skyl

05 Jul 2023 19:44:19,194 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

05 Jul 2023 19:44:19,197 INFO : 1% Done

05 Jul 2023 19:44:19,205 DEBUG: Starting to load chromatogram headers

05 Jul 2023 19:44:19,206 DEBUG: Done loading chromatogram headers

05 Jul 2023 19:44:19,394 INFO : 2% Done

05 Jul 2023 19:44:19,394 INFO : Inserting sp|Q8WXI7|MUC16_HUMAN

05 Jul 2023 19:44:19,421 INFO : 4% Done

05 Jul 2023 19:44:19,440 INFO : 5% Done

05 Jul 2023 19:44:19,458 INFO : 6% Done

05 Jul 2023 19:44:19,476 INFO : 7% Done

05 Jul 2023 19:44:19,492 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:19,493 INFO : 8% Done

05 Jul 2023 19:44:19,493 INFO : Inserting sp|P15941|MUC1_HUMAN

05 Jul 2023 19:44:19,497 INFO : 9% Done

05 Jul 2023 19:44:19,513 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:19,513 INFO : Inserting sp|P22223|CADH3_HUMAN

05 Jul 2023 19:44:19,516 INFO : 10% Done

05 Jul 2023 19:44:19,534 INFO : 11% Done

05 Jul 2023 19:44:19,552 INFO : 13% Done

05 Jul 2023 19:44:19,570 INFO : 14% Done

05 Jul 2023 19:44:19,587 INFO : 15% Done

05 Jul 2023 19:44:19,603 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:19,603 INFO : Inserting sp|P08727|K1C19_HUMAN

05 Jul 2023 19:44:19,607 INFO : 16% Done

05 Jul 2023 19:44:19,625 INFO : 18% Done

05 Jul 2023 19:44:19,642 INFO : 19% Done

05 Jul 2023 19:44:19,660 INFO : 20% Done

05 Jul 2023 19:44:19,678 INFO : 22% Done

05 Jul 2023 19:44:19,694 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:19,694 INFO : Inserting sp|P15328|FOLR1_HUMAN

05 Jul 2023 19:44:19,712 INFO : 23% Done

05 Jul 2023 19:44:19,731 INFO : 25% Done

05 Jul 2023 19:44:19,747 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:19,747 INFO : Inserting sp|Q99988|GDF15_HUMAN

05 Jul 2023 19:44:19,751 INFO : 26% Done

05 Jul 2023 19:44:19,775 INFO : 27% Done

05 Jul 2023 19:44:19,794 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:19,794 INFO : Inserting sp|P08833|IBP1_HUMAN

05 Jul 2023 19:44:19,799 INFO : 28% Done

05 Jul 2023 19:44:19,818 INFO : 30% Done

05 Jul 2023 19:44:19,835 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:19,835 INFO : Inserting sp|P18065|IBP2_HUMAN

05 Jul 2023 19:44:19,857 INFO : 32% Done

05 Jul 2023 19:44:19,875 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:19,875 INFO : Inserting sp|P05231|IL6_HUMAN

05 Jul 2023 19:44:19,879 INFO : 33% Done

05 Jul 2023 19:44:19,899 INFO : 34% Done

05 Jul 2023 19:44:19,919 INFO : 35% Done

05 Jul 2023 19:44:19,938 INFO : 37% Done

05 Jul 2023 19:44:19,955 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:19,955 INFO : Inserting sp|Q9UBX7|KLK11_HUMAN

05 Jul 2023 19:44:19,960 INFO : 38% Done

05 Jul 2023 19:44:19,979 INFO : 39% Done

05 Jul 2023 19:44:19,997 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:19,997 INFO : Inserting sp|Q92876|KLK6_HUMAN

05 Jul 2023 19:44:20,002 INFO : 41% Done

05 Jul 2023 19:44:20,021 INFO : 42% Done

05 Jul 2023 19:44:20,039 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:20,039 INFO : Inserting sp|Q13421|MSLN_HUMAN

05 Jul 2023 19:44:20,043 INFO : 43% Done

05 Jul 2023 19:44:20,062 INFO : 44% Done

05 Jul 2023 19:44:20,082 INFO : 46% Done

05 Jul 2023 19:44:20,102 INFO : 47% Done

05 Jul 2023 19:44:20,119 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:20,119 INFO : Inserting sp|Q96NY8|NECT4_HUMAN

05 Jul 2023 19:44:20,123 INFO : 48% Done

05 Jul 2023 19:44:20,143 INFO : 50% Done

05 Jul 2023 19:44:20,179 INFO : 52% Done

05 Jul 2023 19:44:20,196 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:20,196 INFO : Inserting sp|P10451|OSTP_HUMAN

05 Jul 2023 19:44:20,200 INFO : 53% Done

05 Jul 2023 19:44:20,219 INFO : 54% Done

05 Jul 2023 19:44:20,239 INFO : 55% Done

05 Jul 2023 19:44:20,256 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:20,256 INFO : Inserting sp|P01236|PRL_HUMAN

05 Jul 2023 19:44:20,261 INFO : 57% Done

05 Jul 2023 19:44:20,280 INFO : 58% Done

05 Jul 2023 19:44:20,297 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:20,297 INFO : Inserting sp|Q16651|PRSS8_HUMAN

05 Jul 2023 19:44:20,301 INFO : 59% Done

05 Jul 2023 19:44:20,320 INFO : 60% Done

05 Jul 2023 19:44:20,337 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:20,337 INFO : Inserting sp|P04278|SHBG_HUMAN

05 Jul 2023 19:44:20,342 INFO : 62% Done

05 Jul 2023 19:44:20,378 INFO : 64% Done

05 Jul 2023 19:44:20,395 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:20,395 INFO : Inserting sp|P01033|TIMP1_HUMAN

05 Jul 2023 19:44:20,399 INFO : 66% Done

05 Jul 2023 19:44:20,436 INFO : 68% Done

05 Jul 2023 19:44:20,453 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:20,454 INFO : Inserting sp|P02771|FETA_HUMAN

05 Jul 2023 19:44:20,458 INFO : 69% Done

05 Jul 2023 19:44:20,477 INFO : 70% Done

05 Jul 2023 19:44:20,495 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:20,495 INFO : Inserting sp|P09038|FGF2_HUMAN

05 Jul 2023 19:44:20,499 INFO : 71% Done

05 Jul 2023 19:44:20,518 INFO : 73% Done

05 Jul 2023 19:44:20,535 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:20,535 INFO : Inserting sp|P19883|FST_HUMAN

05 Jul 2023 19:44:20,539 INFO : 74% Done

05 Jul 2023 19:44:20,560 INFO : 75% Done

05 Jul 2023 19:44:20,578 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:20,578 INFO : Inserting sp|P25445|TNR6_HUMAN

05 Jul 2023 19:44:20,582 INFO : 76% Done

05 Jul 2023 19:44:20,599 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:20,600 INFO : 77% Done

05 Jul 2023 19:44:20,600 INFO : Inserting sp|P35968|VGFR2_HUMAN

05 Jul 2023 19:44:20,604 INFO : 78% Done

05 Jul 2023 19:44:20,627 INFO : 79% Done

05 Jul 2023 19:44:20,645 INFO : 80% Done

05 Jul 2023 19:44:20,662 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:20,663 INFO : Done parsing Skyline document.

05 Jul 2023 19:44:20,719 INFO : No group comparisons found.

05 Jul 2023 19:44:20,719 INFO : Calculating calibration curves

05 Jul 2023 19:44:20,720 DEBUG: Calculating calibration curve for sp|Q8WXI7|MUC16_HUMAN, 1 of 23

05 Jul 2023 19:44:20,771 INFO : 81% Done

05 Jul 2023 19:44:20,771 DEBUG: Calculating calibration curve for sp|P15941|MUC1_HUMAN, 2 of 23

05 Jul 2023 19:44:20,785 INFO : 82% Done

05 Jul 2023 19:44:20,785 DEBUG: Calculating calibration curve for sp|P22223|CADH3_HUMAN, 3 of 23

05 Jul 2023 19:44:20,843 DEBUG: Calculating calibration curve for sp|P08727|K1C19_HUMAN, 4 of 23

05 Jul 2023 19:44:20,903 INFO : 83% Done

05 Jul 2023 19:44:20,903 DEBUG: Calculating calibration curve for sp|P15328|FOLR1_HUMAN, 5 of 23

05 Jul 2023 19:44:20,932 INFO : 84% Done

05 Jul 2023 19:44:20,932 DEBUG: Calculating calibration curve for sp|Q99988|GDF15_HUMAN, 6 of 23

05 Jul 2023 19:44:20,952 INFO : 85% Done

05 Jul 2023 19:44:20,952 DEBUG: Calculating calibration curve for sp|P08833|IBP1_HUMAN, 7 of 23

05 Jul 2023 19:44:20,971 DEBUG: Calculating calibration curve for sp|P18065|IBP2_HUMAN, 8 of 23

05 Jul 2023 19:44:20,992 INFO : 86% Done

05 Jul 2023 19:44:20,992 DEBUG: Calculating calibration curve for sp|P05231|IL6_HUMAN, 9 of 23

05 Jul 2023 19:44:21,031 INFO : 87% Done

05 Jul 2023 19:44:21,031 DEBUG: Calculating calibration curve for sp|Q9UBX7|KLK11_HUMAN, 10 of 23

05 Jul 2023 19:44:21,052 INFO : 88% Done

05 Jul 2023 19:44:21,052 DEBUG: Calculating calibration curve for sp|Q92876|KLK6_HUMAN, 11 of 23

05 Jul 2023 19:44:21,074 INFO : 89% Done

05 Jul 2023 19:44:21,074 DEBUG: Calculating calibration curve for sp|Q13421|MSLN_HUMAN, 12 of 23

05 Jul 2023 19:44:21,113 DEBUG: Calculating calibration curve for sp|Q96NY8|NECT4_HUMAN, 13 of 23

05 Jul 2023 19:44:21,153 INFO : 90% Done

05 Jul 2023 19:44:21,153 DEBUG: Calculating calibration curve for sp|P10451|OSTP_HUMAN, 14 of 23

05 Jul 2023 19:44:21,186 INFO : 91% Done

05 Jul 2023 19:44:21,186 DEBUG: Calculating calibration curve for sp|P01236|PRL_HUMAN, 15 of 23

05 Jul 2023 19:44:21,208 INFO : 92% Done

05 Jul 2023 19:44:21,208 DEBUG: Calculating calibration curve for sp|Q16651|PRSS8_HUMAN, 16 of 23

05 Jul 2023 19:44:21,228 INFO : 93% Done

05 Jul 2023 19:44:21,228 DEBUG: Calculating calibration curve for sp|P04278|SHBG_HUMAN, 17 of 23

05 Jul 2023 19:44:21,255 DEBUG: Calculating calibration curve for sp|P01033|TIMP1_HUMAN, 18 of 23

05 Jul 2023 19:44:21,284 INFO : 94% Done

05 Jul 2023 19:44:21,284 DEBUG: Calculating calibration curve for sp|P02771|FETA_HUMAN, 19 of 23

05 Jul 2023 19:44:21,305 INFO : 95% Done

05 Jul 2023 19:44:21,305 DEBUG: Calculating calibration curve for sp|P09038|FGF2_HUMAN, 20 of 23

05 Jul 2023 19:44:21,325 INFO : 96% Done

05 Jul 2023 19:44:21,325 DEBUG: Calculating calibration curve for sp|P19883|FST_HUMAN, 21 of 23

05 Jul 2023 19:44:21,344 DEBUG: Calculating calibration curve for sp|P25445|TNR6_HUMAN, 22 of 23

05 Jul 2023 19:44:21,355 INFO : 97% Done

05 Jul 2023 19:44:21,355 DEBUG: Calculating calibration curve for sp|P35968|VGFR2_HUMAN, 23 of 23

05 Jul 2023 19:44:21,384 INFO : 98% Done

05 Jul 2023 19:44:21,393 INFO : Done calculating calibration curves.

05 Jul 2023 19:44:26,227 INFO : Creating and populating temp tables for Proportion values

05 Jul 2023 19:44:26,303 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

05 Jul 2023 19:44:26,354 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

05 Jul 2023 19:44:26,371 INFO : Cleaning up temp tables

05 Jul 2023 19:44:26,663 INFO : Completed import of Skyline document from Repeatability_Day3_2023-07-05_12-55-02.sky.zip

05 Jul 2023 19:44:26,665 INFO : 100% Done

05 Jul 2023 19:44:26,669 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163341/Repeatability_Day3_2023-07-05_12-55-02.sky.zip into the system

05 Jul 2023 19:44:26,669 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163342/Repeatability_Day4_2023-07-05_12-57-24/Repeatability_Day4.skyd into the system

05 Jul 2023 19:44:26,669 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163342/Repeatability_Day4_2023-07-05_12-57-24/Repeatability_Day4.skyd into the system

05 Jul 2023 19:44:26,669 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163342/Repeatability_Day4_2023-07-05_12-57-24.sky.zip into the system

05 Jul 2023 19:44:26,670 INFO : Starting import from Repeatability_Day4_2023-07-05_12-57-24.sky.zip

05 Jul 2023 19:44:26,672 INFO : Starting to import Skyline document from Repeatability_Day4_2023-07-05_12-57-24.sky.zip

05 Jul 2023 19:44:26,673 INFO : Expanding Repeatability_Day4.skyd

05 Jul 2023 19:44:26,682 INFO : Expanding Repeatability_Day4.sky.view

05 Jul 2023 19:44:26,682 INFO : Expanding Repeatability_Day4.sky

05 Jul 2023 19:44:26,687 INFO : Expanding Repeatability_Day4.skyl

05 Jul 2023 19:44:26,699 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

05 Jul 2023 19:44:26,702 INFO : 1% Done

05 Jul 2023 19:44:26,709 DEBUG: Starting to load chromatogram headers

05 Jul 2023 19:44:26,711 DEBUG: Done loading chromatogram headers

05 Jul 2023 19:44:26,890 INFO : 2% Done

05 Jul 2023 19:44:26,890 INFO : Inserting sp|Q8WXI7|MUC16_HUMAN

05 Jul 2023 19:44:26,915 INFO : 4% Done

05 Jul 2023 19:44:26,933 INFO : 5% Done

05 Jul 2023 19:44:26,951 INFO : 6% Done

05 Jul 2023 19:44:26,968 INFO : 7% Done

05 Jul 2023 19:44:26,985 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:26,986 INFO : 8% Done

05 Jul 2023 19:44:26,986 INFO : Inserting sp|P15941|MUC1_HUMAN

05 Jul 2023 19:44:26,989 INFO : 9% Done

05 Jul 2023 19:44:27,006 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:27,006 INFO : Inserting sp|P22223|CADH3_HUMAN

05 Jul 2023 19:44:27,010 INFO : 10% Done

05 Jul 2023 19:44:27,029 INFO : 11% Done

05 Jul 2023 19:44:27,047 INFO : 13% Done

05 Jul 2023 19:44:27,065 INFO : 14% Done

05 Jul 2023 19:44:27,084 INFO : 15% Done

05 Jul 2023 19:44:27,100 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:27,100 INFO : Inserting sp|P08727|K1C19_HUMAN

05 Jul 2023 19:44:27,104 INFO : 17% Done

05 Jul 2023 19:44:27,122 INFO : 18% Done

05 Jul 2023 19:44:27,141 INFO : 19% Done

05 Jul 2023 19:44:27,159 INFO : 20% Done

05 Jul 2023 19:44:27,177 INFO : 22% Done

05 Jul 2023 19:44:27,194 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:27,194 INFO : Inserting sp|P15328|FOLR1_HUMAN

05 Jul 2023 19:44:27,211 INFO : 23% Done

05 Jul 2023 19:44:27,230 INFO : 25% Done

05 Jul 2023 19:44:27,247 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:27,247 INFO : Inserting sp|Q99988|GDF15_HUMAN

05 Jul 2023 19:44:27,251 INFO : 26% Done

05 Jul 2023 19:44:27,269 INFO : 27% Done

05 Jul 2023 19:44:27,285 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:27,285 INFO : Inserting sp|P08833|IBP1_HUMAN

05 Jul 2023 19:44:27,289 INFO : 28% Done

05 Jul 2023 19:44:27,307 INFO : 30% Done

05 Jul 2023 19:44:27,323 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:27,323 INFO : Inserting sp|P18065|IBP2_HUMAN

05 Jul 2023 19:44:27,327 INFO : 31% Done

05 Jul 2023 19:44:27,345 INFO : 32% Done

05 Jul 2023 19:44:27,361 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:27,361 INFO : Inserting sp|P05231|IL6_HUMAN

05 Jul 2023 19:44:27,365 INFO : 34% Done

05 Jul 2023 19:44:27,402 INFO : 36% Done

05 Jul 2023 19:44:27,419 INFO : 37% Done

05 Jul 2023 19:44:27,436 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:27,436 INFO : Inserting sp|Q9UBX7|KLK11_HUMAN

05 Jul 2023 19:44:27,440 INFO : 38% Done

05 Jul 2023 19:44:27,459 INFO : 39% Done

05 Jul 2023 19:44:27,476 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:27,476 INFO : Inserting sp|Q92876|KLK6_HUMAN

05 Jul 2023 19:44:27,480 INFO : 41% Done

05 Jul 2023 19:44:27,499 INFO : 42% Done

05 Jul 2023 19:44:27,516 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:27,516 INFO : Inserting sp|Q13421|MSLN_HUMAN

05 Jul 2023 19:44:27,520 INFO : 43% Done

05 Jul 2023 19:44:27,539 INFO : 44% Done

05 Jul 2023 19:44:27,558 INFO : 46% Done

05 Jul 2023 19:44:27,592 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:27,593 INFO : 47% Done

05 Jul 2023 19:44:27,593 INFO : Inserting sp|Q96NY8|NECT4_HUMAN

05 Jul 2023 19:44:27,597 INFO : 48% Done

05 Jul 2023 19:44:27,615 INFO : 50% Done

05 Jul 2023 19:44:27,651 INFO : 52% Done

05 Jul 2023 19:44:27,668 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:27,668 INFO : Inserting sp|P10451|OSTP_HUMAN

05 Jul 2023 19:44:27,672 INFO : 53% Done

05 Jul 2023 19:44:27,691 INFO : 54% Done

05 Jul 2023 19:44:27,710 INFO : 55% Done

05 Jul 2023 19:44:27,727 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:27,727 INFO : Inserting sp|P01236|PRL_HUMAN

05 Jul 2023 19:44:27,733 INFO : 57% Done

05 Jul 2023 19:44:27,751 INFO : 58% Done

05 Jul 2023 19:44:27,769 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:27,769 INFO : Inserting sp|Q16651|PRSS8_HUMAN

05 Jul 2023 19:44:27,772 INFO : 59% Done

05 Jul 2023 19:44:27,791 INFO : 60% Done

05 Jul 2023 19:44:27,807 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:27,807 INFO : Inserting sp|P04278|SHBG_HUMAN

05 Jul 2023 19:44:27,811 INFO : 62% Done

05 Jul 2023 19:44:27,848 INFO : 64% Done

05 Jul 2023 19:44:27,865 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:27,865 INFO : Inserting sp|P01033|TIMP1_HUMAN

05 Jul 2023 19:44:27,869 INFO : 66% Done

05 Jul 2023 19:44:27,905 INFO : 68% Done

05 Jul 2023 19:44:27,921 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:27,921 INFO : Inserting sp|P02771|FETA_HUMAN

05 Jul 2023 19:44:27,926 INFO : 69% Done

05 Jul 2023 19:44:27,946 INFO : 70% Done

05 Jul 2023 19:44:27,963 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:27,963 INFO : Inserting sp|P09038|FGF2_HUMAN

05 Jul 2023 19:44:27,967 INFO : 71% Done

05 Jul 2023 19:44:27,986 INFO : 73% Done

05 Jul 2023 19:44:28,004 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:28,004 INFO : Inserting sp|P19883|FST_HUMAN

05 Jul 2023 19:44:28,008 INFO : 74% Done

05 Jul 2023 19:44:28,028 INFO : 75% Done

05 Jul 2023 19:44:28,046 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:28,046 INFO : Inserting sp|P25445|TNR6_HUMAN

05 Jul 2023 19:44:28,050 INFO : 76% Done

05 Jul 2023 19:44:28,068 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:28,068 INFO : Inserting sp|P35968|VGFR2_HUMAN

05 Jul 2023 19:44:28,072 INFO : 78% Done

05 Jul 2023 19:44:28,093 INFO : 79% Done

05 Jul 2023 19:44:28,112 INFO : 80% Done

05 Jul 2023 19:44:28,129 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:28,130 INFO : Done parsing Skyline document.

05 Jul 2023 19:44:28,186 INFO : No group comparisons found.

05 Jul 2023 19:44:28,186 INFO : Calculating calibration curves

05 Jul 2023 19:44:28,187 DEBUG: Calculating calibration curve for sp|Q8WXI7|MUC16_HUMAN, 1 of 23

05 Jul 2023 19:44:28,239 INFO : 81% Done

05 Jul 2023 19:44:28,239 DEBUG: Calculating calibration curve for sp|P15941|MUC1_HUMAN, 2 of 23

05 Jul 2023 19:44:28,250 INFO : 82% Done

05 Jul 2023 19:44:28,250 DEBUG: Calculating calibration curve for sp|P22223|CADH3_HUMAN, 3 of 23

05 Jul 2023 19:44:28,301 DEBUG: Calculating calibration curve for sp|P08727|K1C19_HUMAN, 4 of 23

05 Jul 2023 19:44:28,350 INFO : 83% Done

05 Jul 2023 19:44:28,350 DEBUG: Calculating calibration curve for sp|P15328|FOLR1_HUMAN, 5 of 23

05 Jul 2023 19:44:28,377 INFO : 84% Done

05 Jul 2023 19:44:28,377 DEBUG: Calculating calibration curve for sp|Q99988|GDF15_HUMAN, 6 of 23

05 Jul 2023 19:44:28,395 INFO : 85% Done

05 Jul 2023 19:44:28,395 DEBUG: Calculating calibration curve for sp|P08833|IBP1_HUMAN, 7 of 23

05 Jul 2023 19:44:28,412 DEBUG: Calculating calibration curve for sp|P18065|IBP2_HUMAN, 8 of 23

05 Jul 2023 19:44:28,433 INFO : 86% Done

05 Jul 2023 19:44:28,433 DEBUG: Calculating calibration curve for sp|P05231|IL6_HUMAN, 9 of 23

05 Jul 2023 19:44:28,473 INFO : 87% Done

05 Jul 2023 19:44:28,473 DEBUG: Calculating calibration curve for sp|Q9UBX7|KLK11_HUMAN, 10 of 23

05 Jul 2023 19:44:28,495 INFO : 88% Done

05 Jul 2023 19:44:28,495 DEBUG: Calculating calibration curve for sp|Q92876|KLK6_HUMAN, 11 of 23

05 Jul 2023 19:44:28,516 INFO : 89% Done

05 Jul 2023 19:44:28,516 DEBUG: Calculating calibration curve for sp|Q13421|MSLN_HUMAN, 12 of 23

05 Jul 2023 19:44:28,553 DEBUG: Calculating calibration curve for sp|Q96NY8|NECT4_HUMAN, 13 of 23

05 Jul 2023 19:44:28,590 INFO : 90% Done

05 Jul 2023 19:44:28,590 DEBUG: Calculating calibration curve for sp|P10451|OSTP_HUMAN, 14 of 23

05 Jul 2023 19:44:28,616 INFO : 91% Done

05 Jul 2023 19:44:28,616 DEBUG: Calculating calibration curve for sp|P01236|PRL_HUMAN, 15 of 23

05 Jul 2023 19:44:28,634 INFO : 92% Done

05 Jul 2023 19:44:28,634 DEBUG: Calculating calibration curve for sp|Q16651|PRSS8_HUMAN, 16 of 23

05 Jul 2023 19:44:28,653 INFO : 93% Done

05 Jul 2023 19:44:28,653 DEBUG: Calculating calibration curve for sp|P04278|SHBG_HUMAN, 17 of 23

05 Jul 2023 19:44:28,680 DEBUG: Calculating calibration curve for sp|P01033|TIMP1_HUMAN, 18 of 23

05 Jul 2023 19:44:28,707 INFO : 94% Done

05 Jul 2023 19:44:28,707 DEBUG: Calculating calibration curve for sp|P02771|FETA_HUMAN, 19 of 23

05 Jul 2023 19:44:28,725 INFO : 95% Done

05 Jul 2023 19:44:28,725 DEBUG: Calculating calibration curve for sp|P09038|FGF2_HUMAN, 20 of 23

05 Jul 2023 19:44:28,743 INFO : 96% Done

05 Jul 2023 19:44:28,743 DEBUG: Calculating calibration curve for sp|P19883|FST_HUMAN, 21 of 23

05 Jul 2023 19:44:28,761 DEBUG: Calculating calibration curve for sp|P25445|TNR6_HUMAN, 22 of 23

05 Jul 2023 19:44:28,771 INFO : 97% Done

05 Jul 2023 19:44:28,771 DEBUG: Calculating calibration curve for sp|P35968|VGFR2_HUMAN, 23 of 23

05 Jul 2023 19:44:28,799 INFO : 98% Done

05 Jul 2023 19:44:28,809 INFO : Done calculating calibration curves.

05 Jul 2023 19:44:35,464 INFO : Creating and populating temp tables for Proportion values

05 Jul 2023 19:44:35,538 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

05 Jul 2023 19:44:35,588 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

05 Jul 2023 19:44:35,606 INFO : Cleaning up temp tables

05 Jul 2023 19:44:35,883 INFO : Completed import of Skyline document from Repeatability_Day4_2023-07-05_12-57-24.sky.zip

05 Jul 2023 19:44:35,885 INFO : 100% Done

05 Jul 2023 19:44:35,889 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163342/Repeatability_Day4_2023-07-05_12-57-24.sky.zip into the system

05 Jul 2023 19:44:35,889 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163343/Repeatability_Day5_2023-07-05_12-58-03/Repeatability_Day5.skyd into the system

05 Jul 2023 19:44:35,889 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163343/Repeatability_Day5_2023-07-05_12-58-03/Repeatability_Day5.skyd into the system

05 Jul 2023 19:44:35,889 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163343/Repeatability_Day5_2023-07-05_12-58-03.sky.zip into the system

05 Jul 2023 19:44:35,891 INFO : Starting import from Repeatability_Day5_2023-07-05_12-58-03.sky.zip

05 Jul 2023 19:44:35,893 INFO : Starting to import Skyline document from Repeatability_Day5_2023-07-05_12-58-03.sky.zip

05 Jul 2023 19:44:35,893 INFO : Expanding Repeatability_Day5.skyd

05 Jul 2023 19:44:35,902 INFO : Expanding Repeatability_Day5.sky.view

05 Jul 2023 19:44:35,902 INFO : Expanding Repeatability_Day5.sky

05 Jul 2023 19:44:35,907 INFO : Expanding Repeatability_Day5.skyl

05 Jul 2023 19:44:35,919 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

05 Jul 2023 19:44:35,922 INFO : 1% Done

05 Jul 2023 19:44:35,930 DEBUG: Starting to load chromatogram headers

05 Jul 2023 19:44:35,932 DEBUG: Done loading chromatogram headers

05 Jul 2023 19:44:36,119 INFO : 2% Done

05 Jul 2023 19:44:36,119 INFO : Inserting sp|Q8WXI7|MUC16_HUMAN

05 Jul 2023 19:44:36,145 INFO : 4% Done

05 Jul 2023 19:44:36,164 INFO : 5% Done

05 Jul 2023 19:44:36,183 INFO : 6% Done

05 Jul 2023 19:44:36,201 INFO : 7% Done

05 Jul 2023 19:44:36,218 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:36,219 INFO : 8% Done

05 Jul 2023 19:44:36,219 INFO : Inserting sp|P15941|MUC1_HUMAN

05 Jul 2023 19:44:36,222 INFO : 9% Done

05 Jul 2023 19:44:36,240 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:36,240 INFO : Inserting sp|P22223|CADH3_HUMAN

05 Jul 2023 19:44:36,244 INFO : 10% Done

05 Jul 2023 19:44:36,263 INFO : 11% Done

05 Jul 2023 19:44:36,287 INFO : 13% Done

05 Jul 2023 19:44:36,306 INFO : 14% Done

05 Jul 2023 19:44:36,325 INFO : 15% Done

05 Jul 2023 19:44:36,343 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:36,343 INFO : Inserting sp|P08727|K1C19_HUMAN

05 Jul 2023 19:44:36,346 INFO : 17% Done

05 Jul 2023 19:44:36,366 INFO : 18% Done

05 Jul 2023 19:44:36,385 INFO : 19% Done

05 Jul 2023 19:44:36,405 INFO : 20% Done

05 Jul 2023 19:44:36,424 INFO : 22% Done

05 Jul 2023 19:44:36,441 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:36,441 INFO : Inserting sp|P15328|FOLR1_HUMAN

05 Jul 2023 19:44:36,459 INFO : 23% Done

05 Jul 2023 19:44:36,480 INFO : 25% Done

05 Jul 2023 19:44:36,498 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:36,498 INFO : Inserting sp|Q99988|GDF15_HUMAN

05 Jul 2023 19:44:36,501 INFO : 26% Done

05 Jul 2023 19:44:36,520 INFO : 27% Done

05 Jul 2023 19:44:36,538 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:36,538 INFO : Inserting sp|P08833|IBP1_HUMAN

05 Jul 2023 19:44:36,542 INFO : 28% Done

05 Jul 2023 19:44:36,560 INFO : 30% Done

05 Jul 2023 19:44:36,578 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:36,578 INFO : Inserting sp|P18065|IBP2_HUMAN

05 Jul 2023 19:44:36,600 INFO : 32% Done

05 Jul 2023 19:44:36,618 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:36,618 INFO : Inserting sp|P05231|IL6_HUMAN

05 Jul 2023 19:44:36,622 INFO : 33% Done

05 Jul 2023 19:44:36,642 INFO : 34% Done

05 Jul 2023 19:44:36,661 INFO : 35% Done

05 Jul 2023 19:44:36,680 INFO : 37% Done

05 Jul 2023 19:44:36,698 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:36,698 INFO : Inserting sp|Q9UBX7|KLK11_HUMAN

05 Jul 2023 19:44:36,702 INFO : 38% Done

05 Jul 2023 19:44:36,722 INFO : 39% Done

05 Jul 2023 19:44:36,739 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:36,739 INFO : Inserting sp|Q92876|KLK6_HUMAN

05 Jul 2023 19:44:36,744 INFO : 41% Done

05 Jul 2023 19:44:36,764 INFO : 42% Done

05 Jul 2023 19:44:36,782 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:36,782 INFO : Inserting sp|Q13421|MSLN_HUMAN

05 Jul 2023 19:44:36,786 INFO : 43% Done

05 Jul 2023 19:44:36,806 INFO : 44% Done

05 Jul 2023 19:44:36,826 INFO : 46% Done

05 Jul 2023 19:44:36,860 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:36,861 INFO : 47% Done

05 Jul 2023 19:44:36,861 INFO : Inserting sp|Q96NY8|NECT4_HUMAN

05 Jul 2023 19:44:36,865 INFO : 48% Done

05 Jul 2023 19:44:36,884 INFO : 50% Done

05 Jul 2023 19:44:36,922 INFO : 52% Done

05 Jul 2023 19:44:36,939 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:36,939 INFO : Inserting sp|P10451|OSTP_HUMAN

05 Jul 2023 19:44:36,943 INFO : 53% Done

05 Jul 2023 19:44:36,962 INFO : 54% Done

05 Jul 2023 19:44:36,982 INFO : 55% Done

05 Jul 2023 19:44:36,999 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:36,999 INFO : Inserting sp|P01236|PRL_HUMAN

05 Jul 2023 19:44:37,003 INFO : 57% Done

05 Jul 2023 19:44:37,023 INFO : 58% Done

05 Jul 2023 19:44:37,040 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:37,040 INFO : Inserting sp|Q16651|PRSS8_HUMAN

05 Jul 2023 19:44:37,044 INFO : 59% Done

05 Jul 2023 19:44:37,063 INFO : 60% Done

05 Jul 2023 19:44:37,080 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:37,080 INFO : Inserting sp|P04278|SHBG_HUMAN

05 Jul 2023 19:44:37,085 INFO : 62% Done

05 Jul 2023 19:44:37,122 INFO : 64% Done

05 Jul 2023 19:44:37,139 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:37,139 INFO : Inserting sp|P01033|TIMP1_HUMAN

05 Jul 2023 19:44:37,143 INFO : 66% Done

05 Jul 2023 19:44:37,183 INFO : 68% Done

05 Jul 2023 19:44:37,199 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:37,199 INFO : Inserting sp|P02771|FETA_HUMAN

05 Jul 2023 19:44:37,203 INFO : 69% Done

05 Jul 2023 19:44:37,223 INFO : 70% Done

05 Jul 2023 19:44:37,241 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:37,241 INFO : Inserting sp|P09038|FGF2_HUMAN

05 Jul 2023 19:44:37,245 INFO : 71% Done

05 Jul 2023 19:44:37,265 INFO : 73% Done

05 Jul 2023 19:44:37,282 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:37,282 INFO : Inserting sp|P19883|FST_HUMAN

05 Jul 2023 19:44:37,287 INFO : 74% Done

05 Jul 2023 19:44:37,306 INFO : 75% Done

05 Jul 2023 19:44:37,324 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:37,324 INFO : Inserting sp|P25445|TNR6_HUMAN

05 Jul 2023 19:44:37,328 INFO : 76% Done

05 Jul 2023 19:44:37,346 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:37,347 INFO : 77% Done

05 Jul 2023 19:44:37,347 INFO : Inserting sp|P35968|VGFR2_HUMAN

05 Jul 2023 19:44:37,351 INFO : 78% Done

05 Jul 2023 19:44:37,371 INFO : 79% Done

05 Jul 2023 19:44:37,389 INFO : 80% Done

05 Jul 2023 19:44:37,406 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:37,407 INFO : Done parsing Skyline document.

05 Jul 2023 19:44:37,461 INFO : No group comparisons found.

05 Jul 2023 19:44:37,461 INFO : Calculating calibration curves

05 Jul 2023 19:44:37,462 DEBUG: Calculating calibration curve for sp|Q8WXI7|MUC16_HUMAN, 1 of 23

05 Jul 2023 19:44:37,516 INFO : 81% Done

05 Jul 2023 19:44:37,516 DEBUG: Calculating calibration curve for sp|P15941|MUC1_HUMAN, 2 of 23

05 Jul 2023 19:44:37,528 INFO : 82% Done

05 Jul 2023 19:44:37,528 DEBUG: Calculating calibration curve for sp|P22223|CADH3_HUMAN, 3 of 23

05 Jul 2023 19:44:37,578 DEBUG: Calculating calibration curve for sp|P08727|K1C19_HUMAN, 4 of 23

05 Jul 2023 19:44:37,627 INFO : 83% Done

05 Jul 2023 19:44:37,627 DEBUG: Calculating calibration curve for sp|P15328|FOLR1_HUMAN, 5 of 23

05 Jul 2023 19:44:37,655 INFO : 84% Done

05 Jul 2023 19:44:37,655 DEBUG: Calculating calibration curve for sp|Q99988|GDF15_HUMAN, 6 of 23

05 Jul 2023 19:44:37,672 INFO : 85% Done

05 Jul 2023 19:44:37,672 DEBUG: Calculating calibration curve for sp|P08833|IBP1_HUMAN, 7 of 23

05 Jul 2023 19:44:37,689 DEBUG: Calculating calibration curve for sp|P18065|IBP2_HUMAN, 8 of 23

05 Jul 2023 19:44:37,709 INFO : 86% Done

05 Jul 2023 19:44:37,709 DEBUG: Calculating calibration curve for sp|P05231|IL6_HUMAN, 9 of 23

05 Jul 2023 19:44:37,748 INFO : 87% Done

05 Jul 2023 19:44:37,748 DEBUG: Calculating calibration curve for sp|Q9UBX7|KLK11_HUMAN, 10 of 23

05 Jul 2023 19:44:37,769 INFO : 88% Done

05 Jul 2023 19:44:37,769 DEBUG: Calculating calibration curve for sp|Q92876|KLK6_HUMAN, 11 of 23

05 Jul 2023 19:44:37,788 INFO : 89% Done

05 Jul 2023 19:44:37,788 DEBUG: Calculating calibration curve for sp|Q13421|MSLN_HUMAN, 12 of 23

05 Jul 2023 19:44:37,826 DEBUG: Calculating calibration curve for sp|Q96NY8|NECT4_HUMAN, 13 of 23

05 Jul 2023 19:44:37,863 INFO : 90% Done

05 Jul 2023 19:44:37,863 DEBUG: Calculating calibration curve for sp|P10451|OSTP_HUMAN, 14 of 23

05 Jul 2023 19:44:37,889 INFO : 91% Done

05 Jul 2023 19:44:37,889 DEBUG: Calculating calibration curve for sp|P01236|PRL_HUMAN, 15 of 23

05 Jul 2023 19:44:37,906 INFO : 92% Done

05 Jul 2023 19:44:37,906 DEBUG: Calculating calibration curve for sp|Q16651|PRSS8_HUMAN, 16 of 23

05 Jul 2023 19:44:37,924 INFO : 93% Done

05 Jul 2023 19:44:37,924 DEBUG: Calculating calibration curve for sp|P04278|SHBG_HUMAN, 17 of 23

05 Jul 2023 19:44:37,953 DEBUG: Calculating calibration curve for sp|P01033|TIMP1_HUMAN, 18 of 23

05 Jul 2023 19:44:37,982 INFO : 94% Done

05 Jul 2023 19:44:37,983 DEBUG: Calculating calibration curve for sp|P02771|FETA_HUMAN, 19 of 23

05 Jul 2023 19:44:38,000 INFO : 95% Done

05 Jul 2023 19:44:38,000 DEBUG: Calculating calibration curve for sp|P09038|FGF2_HUMAN, 20 of 23

05 Jul 2023 19:44:38,018 INFO : 96% Done

05 Jul 2023 19:44:38,018 DEBUG: Calculating calibration curve for sp|P19883|FST_HUMAN, 21 of 23

05 Jul 2023 19:44:38,036 DEBUG: Calculating calibration curve for sp|P25445|TNR6_HUMAN, 22 of 23

05 Jul 2023 19:44:38,046 INFO : 97% Done

05 Jul 2023 19:44:38,046 DEBUG: Calculating calibration curve for sp|P35968|VGFR2_HUMAN, 23 of 23

05 Jul 2023 19:44:38,080 INFO : 98% Done

05 Jul 2023 19:44:38,090 INFO : Done calculating calibration curves.

05 Jul 2023 19:44:46,095 INFO : Creating and populating temp tables for Proportion values

05 Jul 2023 19:44:46,179 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

05 Jul 2023 19:44:46,231 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

05 Jul 2023 19:44:46,251 INFO : Cleaning up temp tables

05 Jul 2023 19:44:46,566 INFO : Completed import of Skyline document from Repeatability_Day5_2023-07-05_12-58-03.sky.zip

05 Jul 2023 19:44:46,568 INFO : 100% Done

05 Jul 2023 19:44:46,574 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163343/Repeatability_Day5_2023-07-05_12-58-03.sky.zip into the system

05 Jul 2023 19:44:46,574 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163344/Seletivity_2023-07-05_13-00-03/Seletivity.skyd into the system

05 Jul 2023 19:44:46,574 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163344/Seletivity_2023-07-05_13-00-03/Seletivity.skyd into the system

05 Jul 2023 19:44:46,574 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163344/Seletivity_2023-07-05_13-00-03.sky.zip into the system

05 Jul 2023 19:44:46,575 INFO : Starting import from Seletivity_2023-07-05_13-00-03.sky.zip

05 Jul 2023 19:44:46,577 INFO : Starting to import Skyline document from Seletivity_2023-07-05_13-00-03.sky.zip

05 Jul 2023 19:44:46,578 INFO : Expanding Seletivity.skyd

05 Jul 2023 19:44:46,611 INFO : Expanding Seletivity.sky.view

05 Jul 2023 19:44:46,612 INFO : Expanding Seletivity.sky

05 Jul 2023 19:44:46,629 INFO : Expanding Seletivity.skyl

05 Jul 2023 19:44:46,645 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

05 Jul 2023 19:44:46,649 INFO : 1% Done

05 Jul 2023 19:44:46,677 DEBUG: Starting to load chromatogram headers

05 Jul 2023 19:44:46,683 DEBUG: Done loading chromatogram headers

05 Jul 2023 19:44:46,916 INFO : Inserting sp|Q8WXI7|MUC16_HUMAN

05 Jul 2023 19:44:46,927 INFO : 2% Done

05 Jul 2023 19:44:47,005 INFO : 3% Done

05 Jul 2023 19:44:47,077 INFO : 5% Done

05 Jul 2023 19:44:47,148 INFO : 6% Done

05 Jul 2023 19:44:47,219 INFO : 7% Done

05 Jul 2023 19:44:47,284 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:47,284 INFO : Inserting sp|P15941|MUC1_HUMAN

05 Jul 2023 19:44:47,290 INFO : 8% Done

05 Jul 2023 19:44:47,354 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:47,354 INFO : Inserting sp|P22223|CADH3_HUMAN

05 Jul 2023 19:44:47,360 INFO : 10% Done

05 Jul 2023 19:44:47,496 INFO : 12% Done

05 Jul 2023 19:44:47,566 INFO : 14% Done

05 Jul 2023 19:44:47,695 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:47,695 INFO : Inserting sp|P08727|K1C19_HUMAN

05 Jul 2023 19:44:47,701 INFO : 16% Done

05 Jul 2023 19:44:47,768 INFO : 17% Done

05 Jul 2023 19:44:47,834 INFO : 18% Done

05 Jul 2023 19:44:47,901 INFO : 19% Done

05 Jul 2023 19:44:47,967 INFO : 21% Done

05 Jul 2023 19:44:48,029 DEBUG: Total peptides inserted: 5

05 Jul 2023 19:44:48,029 INFO : Inserting sp|P15328|FOLR1_HUMAN

05 Jul 2023 19:44:48,034 INFO : 22% Done

05 Jul 2023 19:44:48,088 INFO : 23% Done

05 Jul 2023 19:44:48,157 INFO : 24% Done

05 Jul 2023 19:44:48,220 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:48,220 INFO : Inserting sp|Q99988|GDF15_HUMAN

05 Jul 2023 19:44:48,226 INFO : 26% Done

05 Jul 2023 19:44:48,354 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:48,354 INFO : Inserting sp|P08833|IBP1_HUMAN

05 Jul 2023 19:44:48,360 INFO : 28% Done

05 Jul 2023 19:44:48,427 INFO : 29% Done

05 Jul 2023 19:44:48,491 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:48,491 INFO : Inserting sp|P18065|IBP2_HUMAN

05 Jul 2023 19:44:48,496 INFO : 30% Done

05 Jul 2023 19:44:48,564 INFO : 31% Done

05 Jul 2023 19:44:48,628 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:48,628 INFO : Inserting sp|P05231|IL6_HUMAN

05 Jul 2023 19:44:48,633 INFO : 33% Done

05 Jul 2023 19:44:48,700 INFO : 34% Done

05 Jul 2023 19:44:48,765 INFO : 35% Done

05 Jul 2023 19:44:48,831 INFO : 36% Done

05 Jul 2023 19:44:48,894 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:48,895 INFO : 37% Done

05 Jul 2023 19:44:48,895 INFO : Inserting sp|Q9UBX7|KLK11_HUMAN

05 Jul 2023 19:44:48,901 INFO : 38% Done

05 Jul 2023 19:44:48,966 INFO : 39% Done

05 Jul 2023 19:44:49,027 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:49,027 INFO : Inserting sp|Q92876|KLK6_HUMAN

05 Jul 2023 19:44:49,032 INFO : 40% Done

05 Jul 2023 19:44:49,096 INFO : 42% Done

05 Jul 2023 19:44:49,160 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:49,160 INFO : Inserting sp|Q13421|MSLN_HUMAN

05 Jul 2023 19:44:49,229 INFO : 44% Done

05 Jul 2023 19:44:49,295 INFO : 45% Done

05 Jul 2023 19:44:49,359 INFO : 46% Done

05 Jul 2023 19:44:49,422 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:49,422 INFO : Inserting sp|Q96NY8|NECT4_HUMAN

05 Jul 2023 19:44:49,427 INFO : 48% Done

05 Jul 2023 19:44:49,494 INFO : 49% Done

05 Jul 2023 19:44:49,565 INFO : 50% Done

05 Jul 2023 19:44:49,639 INFO : 51% Done

05 Jul 2023 19:44:49,703 DEBUG: Total peptides inserted: 4

05 Jul 2023 19:44:49,704 INFO : Inserting sp|P10451|OSTP_HUMAN

05 Jul 2023 19:44:49,709 INFO : 53% Done

05 Jul 2023 19:44:49,777 INFO : 54% Done

05 Jul 2023 19:44:49,845 INFO : 55% Done

05 Jul 2023 19:44:49,909 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:49,909 INFO : Inserting sp|P01236|PRL_HUMAN

05 Jul 2023 19:44:49,914 INFO : 56% Done

05 Jul 2023 19:44:49,979 INFO : 58% Done

05 Jul 2023 19:44:50,040 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:50,040 INFO : Inserting sp|Q16651|PRSS8_HUMAN

05 Jul 2023 19:44:50,045 INFO : 59% Done

05 Jul 2023 19:44:50,111 INFO : 60% Done

05 Jul 2023 19:44:50,175 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:50,175 INFO : Inserting sp|P04278|SHBG_HUMAN

05 Jul 2023 19:44:50,181 INFO : 62% Done

05 Jul 2023 19:44:50,315 INFO : 64% Done

05 Jul 2023 19:44:50,380 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:50,381 INFO : Inserting sp|P01033|TIMP1_HUMAN

05 Jul 2023 19:44:50,387 INFO : 65% Done

05 Jul 2023 19:44:50,456 INFO : 66% Done

05 Jul 2023 19:44:50,536 INFO : 67% Done

05 Jul 2023 19:44:50,605 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:50,607 INFO : 68% Done

05 Jul 2023 19:44:50,607 INFO : Inserting sp|P02771|FETA_HUMAN

05 Jul 2023 19:44:50,613 INFO : 69% Done

05 Jul 2023 19:44:50,686 INFO : 70% Done

05 Jul 2023 19:44:50,751 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:50,751 INFO : Inserting sp|P09038|FGF2_HUMAN

05 Jul 2023 19:44:50,757 INFO : 71% Done

05 Jul 2023 19:44:50,825 INFO : 73% Done

05 Jul 2023 19:44:50,890 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:50,890 INFO : Inserting sp|P19883|FST_HUMAN

05 Jul 2023 19:44:50,896 INFO : 74% Done

05 Jul 2023 19:44:50,966 INFO : 75% Done

05 Jul 2023 19:44:51,031 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:44:51,032 INFO : Inserting sp|P25445|TNR6_HUMAN

05 Jul 2023 19:44:51,037 INFO : 76% Done

05 Jul 2023 19:44:51,111 DEBUG: Total peptides inserted: 1

05 Jul 2023 19:44:51,111 INFO : Inserting sp|P35968|VGFR2_HUMAN

05 Jul 2023 19:44:51,118 INFO : 78% Done

05 Jul 2023 19:44:51,268 INFO : 80% Done

05 Jul 2023 19:44:51,338 DEBUG: Total peptides inserted: 3

05 Jul 2023 19:44:51,340 INFO : Done parsing Skyline document.

05 Jul 2023 19:44:51,396 INFO : No group comparisons found.

05 Jul 2023 19:44:51,396 INFO : Calculating calibration curves

05 Jul 2023 19:44:51,397 DEBUG: Calculating calibration curve for sp|Q8WXI7|MUC16_HUMAN, 1 of 23

05 Jul 2023 19:44:51,470 INFO : 81% Done

05 Jul 2023 19:44:51,470 DEBUG: Calculating calibration curve for sp|P15941|MUC1_HUMAN, 2 of 23

05 Jul 2023 19:44:51,484 INFO : 82% Done

05 Jul 2023 19:44:51,485 DEBUG: Calculating calibration curve for sp|P22223|CADH3_HUMAN, 3 of 23

05 Jul 2023 19:44:51,553 DEBUG: Calculating calibration curve for sp|P08727|K1C19_HUMAN, 4 of 23

05 Jul 2023 19:44:51,620 INFO : 83% Done

05 Jul 2023 19:44:51,620 DEBUG: Calculating calibration curve for sp|P15328|FOLR1_HUMAN, 5 of 23

05 Jul 2023 19:44:51,659 INFO : 84% Done

05 Jul 2023 19:44:51,659 DEBUG: Calculating calibration curve for sp|Q99988|GDF15_HUMAN, 6 of 23

05 Jul 2023 19:44:51,687 INFO : 85% Done

05 Jul 2023 19:44:51,687 DEBUG: Calculating calibration curve for sp|P08833|IBP1_HUMAN, 7 of 23

05 Jul 2023 19:44:51,714 DEBUG: Calculating calibration curve for sp|P18065|IBP2_HUMAN, 8 of 23

05 Jul 2023 19:44:51,741 INFO : 86% Done

05 Jul 2023 19:44:51,741 DEBUG: Calculating calibration curve for sp|P05231|IL6_HUMAN, 9 of 23

05 Jul 2023 19:44:51,797 INFO : 87% Done

05 Jul 2023 19:44:51,797 DEBUG: Calculating calibration curve for sp|Q9UBX7|KLK11_HUMAN, 10 of 23

05 Jul 2023 19:44:51,825 INFO : 88% Done

05 Jul 2023 19:44:51,825 DEBUG: Calculating calibration curve for sp|Q92876|KLK6_HUMAN, 11 of 23

05 Jul 2023 19:44:51,852 INFO : 89% Done

05 Jul 2023 19:44:51,852 DEBUG: Calculating calibration curve for sp|Q13421|MSLN_HUMAN, 12 of 23

05 Jul 2023 19:44:51,902 DEBUG: Calculating calibration curve for sp|Q96NY8|NECT4_HUMAN, 13 of 23

05 Jul 2023 19:44:51,957 INFO : 90% Done

05 Jul 2023 19:44:51,957 DEBUG: Calculating calibration curve for sp|P10451|OSTP_HUMAN, 14 of 23

05 Jul 2023 19:44:51,997 INFO : 91% Done

05 Jul 2023 19:44:51,997 DEBUG: Calculating calibration curve for sp|P01236|PRL_HUMAN, 15 of 23

05 Jul 2023 19:44:52,022 INFO : 92% Done

05 Jul 2023 19:44:52,022 DEBUG: Calculating calibration curve for sp|Q16651|PRSS8_HUMAN, 16 of 23

05 Jul 2023 19:44:52,047 INFO : 93% Done

05 Jul 2023 19:44:52,047 DEBUG: Calculating calibration curve for sp|P04278|SHBG_HUMAN, 17 of 23

05 Jul 2023 19:44:52,085 DEBUG: Calculating calibration curve for sp|P01033|TIMP1_HUMAN, 18 of 23

05 Jul 2023 19:44:52,122 INFO : 94% Done

05 Jul 2023 19:44:52,122 DEBUG: Calculating calibration curve for sp|P02771|FETA_HUMAN, 19 of 23

05 Jul 2023 19:44:52,147 INFO : 95% Done

05 Jul 2023 19:44:52,147 DEBUG: Calculating calibration curve for sp|P09038|FGF2_HUMAN, 20 of 23

05 Jul 2023 19:44:52,172 INFO : 96% Done

05 Jul 2023 19:44:52,172 DEBUG: Calculating calibration curve for sp|P19883|FST_HUMAN, 21 of 23

05 Jul 2023 19:44:52,195 DEBUG: Calculating calibration curve for sp|P25445|TNR6_HUMAN, 22 of 23

05 Jul 2023 19:44:52,209 INFO : 97% Done

05 Jul 2023 19:44:52,209 DEBUG: Calculating calibration curve for sp|P35968|VGFR2_HUMAN, 23 of 23

05 Jul 2023 19:44:52,246 INFO : 98% Done

05 Jul 2023 19:44:52,255 INFO : Done calculating calibration curves.

05 Jul 2023 19:45:03,010 INFO : Creating and populating temp tables for Proportion values

05 Jul 2023 19:45:03,105 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

05 Jul 2023 19:45:03,294 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

05 Jul 2023 19:45:03,359 INFO : Cleaning up temp tables

05 Jul 2023 19:45:03,659 INFO : Completed import of Skyline document from Seletivity_2023-07-05_13-00-03.sky.zip

05 Jul 2023 19:45:03,664 INFO : 100% Done

05 Jul 2023 19:45:03,667 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163344/Seletivity_2023-07-05_13-00-03.sky.zip into the system

05 Jul 2023 19:45:03,667 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163345/Quant_Pep_Serum_2023-07-05_13-00-37/Quant_Pep_Serum.skyd into the system

05 Jul 2023 19:45:03,668 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163345/Quant_Pep_Serum_2023-07-05_13-00-37/Quant_Pep_Serum.skyd into the system

05 Jul 2023 19:45:03,668 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163345/Quant_Pep_Serum_2023-07-05_13-00-37.sky.zip into the system

05 Jul 2023 19:45:03,669 INFO : Starting import from Quant_Pep_Serum_2023-07-05_13-00-37.sky.zip

05 Jul 2023 19:45:03,671 INFO : Starting to import Skyline document from Quant_Pep_Serum_2023-07-05_13-00-37.sky.zip

05 Jul 2023 19:45:03,674 INFO : Expanding Quant_Pep_Serum.skyd

05 Jul 2023 19:45:03,754 INFO : Expanding Quant_Pep_Serum.sky.view

05 Jul 2023 19:45:03,754 INFO : Expanding Quant_Pep_Serum.sky

05 Jul 2023 19:45:03,764 INFO : Expanding Quant_Pep_Serum.skyl

05 Jul 2023 19:45:03,773 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

05 Jul 2023 19:45:03,778 INFO : 5% Done

05 Jul 2023 19:45:03,927 DEBUG: Starting to load chromatogram headers

05 Jul 2023 19:45:03,937 DEBUG: Done loading chromatogram headers

05 Jul 2023 19:45:04,282 INFO : Inserting sp|P18065|IBP2_HUMAN

05 Jul 2023 19:45:04,300 INFO : 17% Done

05 Jul 2023 19:45:04,588 INFO : 30% Done

05 Jul 2023 19:45:04,855 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:45:04,855 INFO : Inserting sp|P04278|SHBG_HUMAN

05 Jul 2023 19:45:04,873 INFO : 42% Done

05 Jul 2023 19:45:05,158 INFO : 54% Done

05 Jul 2023 19:45:05,433 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:45:05,433 INFO : Inserting sp|P01033|TIMP1_HUMAN

05 Jul 2023 19:45:05,450 INFO : 67% Done

05 Jul 2023 19:45:05,729 INFO : 80% Done

05 Jul 2023 19:45:06,006 DEBUG: Total peptides inserted: 2

05 Jul 2023 19:45:06,007 INFO : Done parsing Skyline document.

05 Jul 2023 19:45:06,064 INFO : No group comparisons found.

05 Jul 2023 19:45:06,064 INFO : Calculating calibration curves

05 Jul 2023 19:45:06,064 DEBUG: Calculating calibration curve for sp|P18065|IBP2_HUMAN, 1 of 3

05 Jul 2023 19:45:06,123 INFO : 86% Done

05 Jul 2023 19:45:06,124 DEBUG: Calculating calibration curve for sp|P04278|SHBG_HUMAN, 2 of 3

05 Jul 2023 19:45:06,187 INFO : 92% Done

05 Jul 2023 19:45:06,187 DEBUG: Calculating calibration curve for sp|P01033|TIMP1_HUMAN, 3 of 3

05 Jul 2023 19:45:06,247 INFO : 98% Done

05 Jul 2023 19:45:06,385 INFO : Done calculating calibration curves.

05 Jul 2023 19:45:10,466 INFO : Creating and populating temp tables for Proportion values

05 Jul 2023 19:45:10,550 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

05 Jul 2023 19:45:10,625 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

05 Jul 2023 19:45:10,652 INFO : Cleaning up temp tables

05 Jul 2023 19:45:10,908 INFO : Completed import of Skyline document from Quant_Pep_Serum_2023-07-05_13-00-37.sky.zip

05 Jul 2023 19:45:10,910 INFO : 100% Done

05 Jul 2023 19:45:10,913 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163345/Quant_Pep_Serum_2023-07-05_13-00-37.sky.zip into the system

05 Jul 2023 19:45:10,938 INFO : Done importing xar

05 Jul 2023 19:45:10,939 INFO : Loading pages and webpart properties

05 Jul 2023 19:45:10,991 INFO : Done importing 3 page(s) with 4 webpart(s)

05 Jul 2023 19:45:10,991 INFO : Loading File Browser config

05 Jul 2023 19:45:10,991 INFO : Done importing File Browser config

05 Jul 2023 19:45:10,992 INFO : Starting Sample Status Data import

05 Jul 2023 19:45:10,992 INFO : No sample types XAR file to process.

05 Jul 2023 19:45:10,992 INFO : Finished importing Sample Status Data

05 Jul 2023 19:45:10,996 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

05 Jul 2023 19:45:10,997 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping

05 Jul 2023 19:45:10,998 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping

05 Jul 2023 19:45:10,998 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping

05 Jul 2023 19:45:10,998 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping

05 Jul 2023 19:45:10,998 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

05 Jul 2023 19:45:10,999 INFO : Importing files metadata.

05 Jul 2023 19:45:10,999 DEBUG: [/Panorama Public/2023/U of Minnesota Thomas Lab - OC_PRM]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U of Minnesota Thomas Lab - OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export

05 Jul 2023 19:45:10,999 INFO : 

05 Jul 2023 19:45:10,999 INFO : Experiment import completed successfully.

05 Jul 2023 19:45:10,999 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

05 Jul 2023 19:45:11,017 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'

05 Jul 2023 19:45:11,017 INFO : 

05 Jul 2023 19:45:11,017 INFO : Checking for library folders.

05 Jul 2023 19:45:11,018 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'

05 Jul 2023 19:45:11,032 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

05 Jul 2023 19:45:11,032 INFO : 

05 Jul 2023 19:45:11,032 INFO : Finishing up experiment copy.

05 Jul 2023 19:45:11,034 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

05 Jul 2023 19:45:11,034 INFO : Setting version on new experiment to 1

05 Jul 2023 19:45:11,034 INFO : Assigning a DOI.

05 Jul 2023 19:45:11,840 INFO : Assigned DOI: 10.6069/x167-9c96

05 Jul 2023 19:45:11,843 INFO : Updating permanent link to point to the new copy of the data.

05 Jul 2023 19:45:11,847 INFO : Removing copy permissions given to Panorama Public

05 Jul 2023 19:45:11,863 INFO : Adding read permissions to all users that are folder admins in the source folder.

05 Jul 2023 19:45:11,864 INFO : Assigning PanoramaPublicSubmitterRole to jryu@umn.edu

05 Jul 2023 19:45:11,864 INFO : Assigning PanoramaPublicSubmitterRole to jryu@umn.edu

05 Jul 2023 19:45:11,867 INFO : Adding user jryu@umn.edu to group Panorama Public Submitters

05 Jul 2023 19:45:11,872 INFO : User jryu@umn.edu is already a member of group Panorama Public Submitters

05 Jul 2023 19:45:11,882 INFO : Updating the 'Raw Data' tab configuration

05 Jul 2023 19:45:11,885 INFO : Updating dataFileUrls for run CalCurves_2023-07-05_12-51-02.sky.zip; targetedms run ID 165869

05 Jul 2023 19:45:11,885 INFO : Updating dataFileUrl...

05 Jul 2023 19:45:11,885 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163337/CalCurves_2023-07-05_12-51-02.sky.zip

05 Jul 2023 19:45:11,885 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM/@files/CalCurves_2023-07-05_12-51-02.sky.zip

05 Jul 2023 19:45:11,887 INFO : Updating dataFileUrl...

05 Jul 2023 19:45:11,887 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163337/CalCurves_2023-07-05_12-51-02/CalCurves.skyd

05 Jul 2023 19:45:11,887 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM/@files/CalCurves_2023-07-05_12-51-02/CalCurves.skyd

05 Jul 2023 19:45:11,890 INFO : Updating dataFileUrls for run Repeatability_Day1_2023-07-05_12-53-16.sky.zip; targetedms run ID 165870

05 Jul 2023 19:45:11,890 INFO : Updating dataFileUrl...

05 Jul 2023 19:45:11,890 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163338/Repeatability_Day1_2023-07-05_12-53-16/Repeatability_Day1.skyd

05 Jul 2023 19:45:11,890 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM/@files/Repeatability_Day1_2023-07-05_12-53-16/Repeatability_Day1.skyd

05 Jul 2023 19:45:11,891 INFO : Updating dataFileUrl...

05 Jul 2023 19:45:11,891 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163338/Repeatability_Day1_2023-07-05_12-53-16.sky.zip

05 Jul 2023 19:45:11,891 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM/@files/Repeatability_Day1_2023-07-05_12-53-16.sky.zip

05 Jul 2023 19:45:11,895 INFO : Updating dataFileUrls for run Repeatability_Day2_2023-07-05_12-53-47.sky.zip; targetedms run ID 165871

05 Jul 2023 19:45:11,895 INFO : Updating dataFileUrl...

05 Jul 2023 19:45:11,895 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM_76567b57-fdd4-103b-afc6-fea6ddf51ba4/_temp__2023-07-05_19-43-43/export/xar/experiments_and_runs.xar.exploded/Run163339/Repeatability_Day2_2023-07-05_12-53-47/Repeatability_Day2.skyd

05 Jul 2023 19:45:11,895 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/U%20of%20Minnesota%20Thomas%20Lab%20-%20OC_PRM/@files/Repeatability_Day2_2023-07-05_12-53-47/Repeatability_Day2.skyd

05 Jul 2023 19:45:11,897 INFO : Updating dataFileUrl...

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05 Jul 2023 19:45:11,899 INFO : Updating dataFileUrls for run Repeatability_Day3_2023-07-05_12-55-02.sky.zip; targetedms run ID 165872

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05 Jul 2023 19:45:11,903 INFO : Updating dataFileUrls for run Repeatability_Day4_2023-07-05_12-57-24.sky.zip; targetedms run ID 165873

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05 Jul 2023 19:45:11,907 INFO : Updating dataFileUrls for run Repeatability_Day5_2023-07-05_12-58-03.sky.zip; targetedms run ID 165874

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05 Jul 2023 19:45:11,911 INFO : Updating dataFileUrls for run Seletivity_2023-07-05_13-00-03.sky.zip; targetedms run ID 165875

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05 Jul 2023 19:45:11,915 INFO : Updating dataFileUrls for run Quant_Pep_Serum_2023-07-05_13-00-37.sky.zip; targetedms run ID 165876

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05 Jul 2023 19:45:11,921 INFO : Creating a reviewer account.

05 Jul 2023 19:45:12,126 INFO : Created reviewer with email: User panorama+reviewer194@proteinms.net

05 Jul 2023 19:45:12,141 INFO : Adding user panorama+reviewer194@proteinms.net to group Reviewers

05 Jul 2023 19:45:12,143 INFO : Hiding the Data Pipeline tab.

05 Jul 2023 19:45:12,147 INFO : Updating Submission. Setting copiedExperimentId to 1644

05 Jul 2023 19:45:12,208 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'