Skyline document import - HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final_2020-10-15_08-23-52.sky.zip: /Panorama Public/2020/Paulovich - HER2_cellularity_breast_cancer_tissue_frozen_FFPE

Skyline document import - HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final_2020-10-15_08-23-52.sky.zip

Paulovich - HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM

Job Status

Created:

2020-10-15 10:49:33

Modified:

2020-10-15 10:49:50

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Skyline document import - HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final_2020-10-15_08-23-52.sky.zip

File Path:

/data/labkey/files/Panorama Public/2020/Paulovich - HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final_2020-10-15_08-23-52.sky_2020-10-15_10-49-32.log

Files:

HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final_2020-10-15_08-23-52.sky_2020-10-15_10-49-32.log

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Completed Runs:

HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final_2020-10-15_08-23-52.sky.zip

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Log File

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15 Oct 2020 10:49:33,299 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

15 Oct 2020 10:49:33,320 INFO : Starting to import Skyline document from HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final_2020-10-15_08-23-52.sky.zip

15 Oct 2020 10:49:33,323 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final.skyd

15 Oct 2020 10:49:33,633 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final.sky.view

15 Oct 2020 10:49:33,655 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final.sky

15 Oct 2020 10:49:33,785 WARN : The version of this Skyline document is 20.2. This is newer than the highest supported version 4.1

15 Oct 2020 10:49:33,810 INFO : 1% Done

15 Oct 2020 10:49:35,055 INFO : Inserting sp|P35555|FBN1_HUMAN

15 Oct 2020 10:49:35,145 INFO : 6% Done

15 Oct 2020 10:49:36,192 INFO : 11% Done

15 Oct 2020 10:49:36,866 INFO : 15% Done

15 Oct 2020 10:49:37,545 DEBUG: Total peptides inserted: 3

15 Oct 2020 10:49:37,643 INFO : Inserting sp|Q96Q06|PLIN4_HUMAN

15 Oct 2020 10:49:37,733 INFO : 20% Done

15 Oct 2020 10:49:38,400 INFO : 24% Done

15 Oct 2020 10:49:39,151 DEBUG: Total peptides inserted: 2

15 Oct 2020 10:49:39,244 INFO : Inserting sp|P08575|PTPRC_HUMAN

15 Oct 2020 10:49:39,297 INFO : 28% Done

15 Oct 2020 10:49:40,065 INFO : 32% Done

15 Oct 2020 10:49:40,556 DEBUG: Total peptides inserted: 2

15 Oct 2020 10:49:40,659 INFO : Inserting sp|P15090|FABP4_HUMAN

15 Oct 2020 10:49:40,703 INFO : 37% Done

15 Oct 2020 10:49:41,302 DEBUG: Total peptides inserted: 1

15 Oct 2020 10:49:41,357 INFO : Inserting sp|P08729|K2C7_HUMAN

15 Oct 2020 10:49:41,388 INFO : 42% Done

15 Oct 2020 10:49:41,965 INFO : 46% Done

15 Oct 2020 10:49:42,528 DEBUG: Total peptides inserted: 2

15 Oct 2020 10:49:42,559 INFO : Inserting sp|P13647|K2C5_HUMAN

15 Oct 2020 10:49:42,574 INFO : 51% Done

15 Oct 2020 10:49:43,188 INFO : 56% Done

15 Oct 2020 10:49:43,687 DEBUG: Total peptides inserted: 2

15 Oct 2020 10:49:43,793 INFO : Inserting sp|P13611|CSPG2_HUMAN

15 Oct 2020 10:49:43,819 INFO : 60% Done

15 Oct 2020 10:49:44,361 DEBUG: Total peptides inserted: 1

15 Oct 2020 10:49:44,502 INFO : Inserting sp|P04626|ERBB2_HUMAN

15 Oct 2020 10:49:44,524 INFO : 65% Done

15 Oct 2020 10:49:45,034 INFO : 69% Done

15 Oct 2020 10:49:45,592 DEBUG: Total peptides inserted: 2

15 Oct 2020 10:49:45,689 INFO : Inserting sp|P68871|HBB_HUMAN

15 Oct 2020 10:49:45,722 INFO : 73% Done

15 Oct 2020 10:49:46,199 INFO : 76% Done

15 Oct 2020 10:49:46,628 DEBUG: Total peptides inserted: 2

15 Oct 2020 10:49:46,802 INFO : Inserting sp|P16284|PECA1_HUMAN

15 Oct 2020 10:49:46,856 INFO : 79% Done

15 Oct 2020 10:49:47,296 DEBUG: Total peptides inserted: 1

15 Oct 2020 10:49:47,461 INFO : Inserting sp|P68133|ACTS_HUMAN

15 Oct 2020 10:49:47,497 INFO : 83% Done

15 Oct 2020 10:49:47,943 DEBUG: Total peptides inserted: 1

15 Oct 2020 10:49:48,011 INFO : Inserting sp|P07437|TBB5_HUMAN

15 Oct 2020 10:49:48,061 INFO : 87% Done

15 Oct 2020 10:49:48,547 DEBUG: Total peptides inserted: 1

15 Oct 2020 10:49:48,655 INFO : Inserting sp|P04406|G3P_HUMAN

15 Oct 2020 10:49:48,700 INFO : 90% Done

15 Oct 2020 10:49:49,060 DEBUG: Total peptides inserted: 1

15 Oct 2020 10:49:49,150 INFO : Inserting sp|P13645|K1C10_HUMAN

15 Oct 2020 10:49:49,183 INFO : 95% Done

15 Oct 2020 10:49:49,746 DEBUG: Total peptides inserted: 1

15 Oct 2020 10:49:49,781 INFO : Inserting sp|P05787|K2C8_HUMAN

15 Oct 2020 10:49:49,819 INFO : 98% Done

15 Oct 2020 10:49:50,278 DEBUG: Total peptides inserted: 1

15 Oct 2020 10:49:50,279 INFO : Done parsing Skyline document.

15 Oct 2020 10:49:50,283 INFO : Creating and populating temp tables for Proportion values

15 Oct 2020 10:49:50,380 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

15 Oct 2020 10:49:50,568 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

15 Oct 2020 10:49:50,651 INFO : Cleaning up temp tables

15 Oct 2020 10:49:50,656 INFO : Completed import of Skyline document from HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_final_2020-10-15_08-23-52.sky.zip

15 Oct 2020 10:49:50,683 INFO : 100% Done

15 Oct 2020 10:49:50,871 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'