Copying experiment: Detection and Quantification of Drug-Protein Adducts in Human Liver

UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper

Job Status

Created: 2024-07-25 13:21:03
Modified: 2024-07-25 13:24:34
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Detection and Quantification of Drug-Protein Adducts in Human Liver
File Path: /data/labkey/files/Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/@files/Experiment_1969.log
Files: Experiment_1969.log
Completed Runs: Supersome-CYP2C8-C225-quant.sky.zip
Supersome-CYP2C9-C216-quant.sky.zip
Supersome-CYP3A4-C239-chromatography-optimization.sky.zip
All_HLM_quant_Main_Figure.sky.zip

Log File


25 Jul 2024 13:21:03,185 INFO : Copying experiment "Detection and Quantification of Drug-Protein Adducts in Human Liver" from folder /UW - Isoherranen Lab/2024 Drug-Protein Adducts Raloxifene Paper to /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper
25 Jul 2024 13:21:03,185 INFO : =======================================
25 Jul 2024 13:23:31,435 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
25 Jul 2024 13:23:31,435 INFO :
25 Jul 2024 13:23:31,435 INFO : Exporting experiment.
25 Jul 2024 13:23:52,568 INFO : Exporting files metadata.
25 Jul 2024 13:23:52,717 INFO :
25 Jul 2024 13:23:52,717 INFO : Experiment export completed successfully.
25 Jul 2024 13:23:52,717 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
25 Jul 2024 13:23:52,750 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
25 Jul 2024 13:23:52,750 INFO :
25 Jul 2024 13:23:52,750 INFO : Importing experiment.
25 Jul 2024 13:23:52,787 INFO : Loading folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:52,863 INFO : Done importing folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:52,865 INFO : Loading container specific module properties
25 Jul 2024 13:23:52,869 INFO : Done importing container specific module properties
25 Jul 2024 13:23:52,884 INFO : Loading queries
25 Jul 2024 13:23:52,889 INFO : 1 query imported
25 Jul 2024 13:23:52,889 INFO : Done importing queries
25 Jul 2024 13:23:52,891 INFO : Loading etl definitions
25 Jul 2024 13:23:52,893 INFO : Loading wikis
25 Jul 2024 13:23:52,900 INFO : 1 wiki imported
25 Jul 2024 13:23:52,900 INFO : Done importing wikis
25 Jul 2024 13:23:52,902 INFO : Starting Data Class Importer
25 Jul 2024 13:23:52,903 INFO : No types XAR file to process.
25 Jul 2024 13:23:52,903 INFO : Finished Data Class Importer
25 Jul 2024 13:23:52,904 INFO : Starting to copy files
25 Jul 2024 13:23:52,904 INFO : Copied 0 files
25 Jul 2024 13:23:52,904 INFO : Ensuring exp.data rows exist for imported files
25 Jul 2024 13:23:53,350 INFO : Starting Sample Type Importer
25 Jul 2024 13:23:53,351 INFO : No types XAR file to process.
25 Jul 2024 13:23:53,351 INFO : Finished Sample Type Importer
25 Jul 2024 13:23:53,352 INFO : Loading xar
25 Jul 2024 13:23:53,367 INFO : Done importing xar
25 Jul 2024 13:23:53,368 INFO : Loading pages and webpart properties
25 Jul 2024 13:23:53,431 INFO : Done importing 3 page(s) with 4 webpart(s)
25 Jul 2024 13:23:53,431 INFO : Loading File Browser config
25 Jul 2024 13:23:53,431 INFO : Done importing File Browser config
25 Jul 2024 13:23:53,432 INFO : Starting Sample Status Data import
25 Jul 2024 13:23:53,433 INFO : No sample types XAR file to process.
25 Jul 2024 13:23:53,433 INFO : Finished importing Sample Status Data
25 Jul 2024 13:23:53,438 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:53,445 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Jul 2024 13:23:53,446 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Jul 2024 13:23:53,446 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Jul 2024 13:23:53,446 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Jul 2024 13:23:53,447 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:53,448 INFO : Loading subfolders and container tabs
25 Jul 2024 13:23:53,511 INFO : New folder created with inherited permissions: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data
25 Jul 2024 13:23:53,511 INFO : Loading folder archive for DDA Data
25 Jul 2024 13:23:53,512 INFO : Loading folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:53,573 INFO : Done importing folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:53,575 INFO : Loading container specific module properties
25 Jul 2024 13:23:53,578 INFO : Done importing container specific module properties
25 Jul 2024 13:23:53,580 INFO : Loading queries
25 Jul 2024 13:23:53,583 INFO : 1 query imported
25 Jul 2024 13:23:53,583 INFO : Done importing queries
25 Jul 2024 13:23:53,584 INFO : Loading etl definitions
25 Jul 2024 13:23:53,586 INFO : Loading wikis
25 Jul 2024 13:23:53,599 INFO : 1 wiki imported
25 Jul 2024 13:23:53,599 INFO : Done importing wikis
25 Jul 2024 13:23:53,601 INFO : Starting Data Class Importer
25 Jul 2024 13:23:53,601 INFO : No types XAR file to process.
25 Jul 2024 13:23:53,601 INFO : Finished Data Class Importer
25 Jul 2024 13:23:53,602 INFO : Starting to copy files
25 Jul 2024 13:23:53,602 INFO : Copied 0 files
25 Jul 2024 13:23:53,602 INFO : Ensuring exp.data rows exist for imported files
25 Jul 2024 13:23:53,607 INFO : Starting Sample Type Importer
25 Jul 2024 13:23:53,607 INFO : No types XAR file to process.
25 Jul 2024 13:23:53,607 INFO : Finished Sample Type Importer
25 Jul 2024 13:23:53,608 INFO : Loading xar
25 Jul 2024 13:23:53,621 INFO : Done importing xar
25 Jul 2024 13:23:53,623 INFO : Loading pages and webpart properties
25 Jul 2024 13:23:53,696 INFO : Done importing 3 page(s) with 4 webpart(s)
25 Jul 2024 13:23:53,697 INFO : Loading File Browser config
25 Jul 2024 13:23:53,697 INFO : Done importing File Browser config
25 Jul 2024 13:23:53,698 INFO : Starting Sample Status Data import
25 Jul 2024 13:23:53,698 INFO : No sample types XAR file to process.
25 Jul 2024 13:23:53,698 INFO : Finished importing Sample Status Data
25 Jul 2024 13:23:53,704 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:53,706 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Jul 2024 13:23:53,707 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Jul 2024 13:23:53,708 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Jul 2024 13:23:53,708 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Jul 2024 13:23:53,708 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:53,710 INFO : Loading subfolders and container tabs
25 Jul 2024 13:23:53,778 INFO : New folder created with inherited permissions: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/HLMs
25 Jul 2024 13:23:53,778 INFO : Loading folder archive for HLMs
25 Jul 2024 13:23:53,780 INFO : Loading folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:53,849 INFO : Done importing folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:53,850 INFO : Loading container specific module properties
25 Jul 2024 13:23:53,854 INFO : Done importing container specific module properties
25 Jul 2024 13:23:53,855 INFO : Loading queries
25 Jul 2024 13:23:53,859 INFO : 1 query imported
25 Jul 2024 13:23:53,859 INFO : Done importing queries
25 Jul 2024 13:23:53,860 INFO : Loading etl definitions
25 Jul 2024 13:23:53,861 INFO : Loading wikis
25 Jul 2024 13:23:53,863 INFO : 0 wikis imported
25 Jul 2024 13:23:53,863 INFO : Done importing wikis
25 Jul 2024 13:23:53,864 INFO : Starting Data Class Importer
25 Jul 2024 13:23:53,864 INFO : No types XAR file to process.
25 Jul 2024 13:23:53,864 INFO : Finished Data Class Importer
25 Jul 2024 13:23:53,865 INFO : Starting to copy files
25 Jul 2024 13:23:53,865 INFO : Copied 0 files
25 Jul 2024 13:23:53,865 INFO : Ensuring exp.data rows exist for imported files
25 Jul 2024 13:23:53,870 INFO : Starting Sample Type Importer
25 Jul 2024 13:23:53,871 INFO : No types XAR file to process.
25 Jul 2024 13:23:53,871 INFO : Finished Sample Type Importer
25 Jul 2024 13:23:53,872 INFO : Loading xar
25 Jul 2024 13:23:53,876 INFO : Done importing xar
25 Jul 2024 13:23:53,878 INFO : Loading pages and webpart properties
25 Jul 2024 13:23:53,976 INFO : Done importing 3 page(s) with 3 webpart(s)
25 Jul 2024 13:23:53,976 INFO : Loading File Browser config
25 Jul 2024 13:23:53,976 INFO : Done importing File Browser config
25 Jul 2024 13:23:53,978 INFO : Starting Sample Status Data import
25 Jul 2024 13:23:53,978 INFO : No sample types XAR file to process.
25 Jul 2024 13:23:53,978 INFO : Finished importing Sample Status Data
25 Jul 2024 13:23:53,986 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:53,989 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Jul 2024 13:23:53,989 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Jul 2024 13:23:53,990 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Jul 2024 13:23:53,991 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Jul 2024 13:23:53,991 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:53,995 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
25 Jul 2024 13:23:54,012 INFO : Moving files to folder /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/HLMs and creating symlinks
25 Jul 2024 13:23:54,155 INFO : Aligning data files urls in folder: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/HLMs
25 Jul 2024 13:23:54,156 INFO : Done importing folder archive for HLMs
25 Jul 2024 13:23:54,232 INFO : New folder created with inherited permissions: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/Supersomes
25 Jul 2024 13:23:54,232 INFO : Loading folder archive for Supersomes
25 Jul 2024 13:23:54,234 INFO : Loading folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:54,322 INFO : Done importing folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:54,324 INFO : Loading container specific module properties
25 Jul 2024 13:23:54,331 INFO : Done importing container specific module properties
25 Jul 2024 13:23:54,333 INFO : Loading queries
25 Jul 2024 13:23:54,338 INFO : 1 query imported
25 Jul 2024 13:23:54,339 INFO : Done importing queries
25 Jul 2024 13:23:54,341 INFO : Loading etl definitions
25 Jul 2024 13:23:54,344 INFO : Loading wikis
25 Jul 2024 13:23:54,346 INFO : 0 wikis imported
25 Jul 2024 13:23:54,346 INFO : Done importing wikis
25 Jul 2024 13:23:54,348 INFO : Starting Data Class Importer
25 Jul 2024 13:23:54,348 INFO : No types XAR file to process.
25 Jul 2024 13:23:54,348 INFO : Finished Data Class Importer
25 Jul 2024 13:23:54,349 INFO : Starting to copy files
25 Jul 2024 13:23:54,350 INFO : Copied 0 files
25 Jul 2024 13:23:54,350 INFO : Ensuring exp.data rows exist for imported files
25 Jul 2024 13:23:54,356 INFO : Starting Sample Type Importer
25 Jul 2024 13:23:54,356 INFO : No types XAR file to process.
25 Jul 2024 13:23:54,356 INFO : Finished Sample Type Importer
25 Jul 2024 13:23:54,357 INFO : Loading xar
25 Jul 2024 13:23:54,363 INFO : Done importing xar
25 Jul 2024 13:23:54,365 INFO : Loading pages and webpart properties
25 Jul 2024 13:23:54,458 INFO : Done importing 3 page(s) with 3 webpart(s)
25 Jul 2024 13:23:54,459 INFO : Loading File Browser config
25 Jul 2024 13:23:54,459 INFO : Done importing File Browser config
25 Jul 2024 13:23:54,460 INFO : Starting Sample Status Data import
25 Jul 2024 13:23:54,460 INFO : No sample types XAR file to process.
25 Jul 2024 13:23:54,460 INFO : Finished importing Sample Status Data
25 Jul 2024 13:23:54,467 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:54,471 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Jul 2024 13:23:54,472 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Jul 2024 13:23:54,472 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Jul 2024 13:23:54,473 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Jul 2024 13:23:54,473 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:54,474 INFO : Moving files to folder /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/Supersomes and creating symlinks
25 Jul 2024 13:23:54,573 INFO : Aligning data files urls in folder: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/Supersomes
25 Jul 2024 13:23:54,574 INFO : Done importing folder archive for Supersomes
25 Jul 2024 13:23:54,650 INFO : New folder created with inherited permissions: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/Supersomes - CYP3A4 C239
25 Jul 2024 13:23:54,650 INFO : Loading folder archive for Supersomes - CYP3A4 C239
25 Jul 2024 13:23:54,651 INFO : Loading folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:54,736 INFO : Done importing folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:54,738 INFO : Loading container specific module properties
25 Jul 2024 13:23:54,743 INFO : Done importing container specific module properties
25 Jul 2024 13:23:54,744 INFO : Loading queries
25 Jul 2024 13:23:54,748 INFO : 1 query imported
25 Jul 2024 13:23:54,748 INFO : Done importing queries
25 Jul 2024 13:23:54,749 INFO : Loading etl definitions
25 Jul 2024 13:23:54,751 INFO : Loading wikis
25 Jul 2024 13:23:54,752 INFO : 0 wikis imported
25 Jul 2024 13:23:54,752 INFO : Done importing wikis
25 Jul 2024 13:23:54,754 INFO : Starting Data Class Importer
25 Jul 2024 13:23:54,754 INFO : No types XAR file to process.
25 Jul 2024 13:23:54,754 INFO : Finished Data Class Importer
25 Jul 2024 13:23:54,755 INFO : Starting to copy files
25 Jul 2024 13:23:54,755 INFO : Copied 0 files
25 Jul 2024 13:23:54,755 INFO : Ensuring exp.data rows exist for imported files
25 Jul 2024 13:23:54,763 INFO : Starting Sample Type Importer
25 Jul 2024 13:23:54,763 INFO : No types XAR file to process.
25 Jul 2024 13:23:54,763 INFO : Finished Sample Type Importer
25 Jul 2024 13:23:54,764 INFO : Loading xar
25 Jul 2024 13:23:54,770 INFO : Done importing xar
25 Jul 2024 13:23:54,772 INFO : Loading pages and webpart properties
25 Jul 2024 13:23:54,866 INFO : Done importing 3 page(s) with 3 webpart(s)
25 Jul 2024 13:23:54,866 INFO : Loading File Browser config
25 Jul 2024 13:23:54,866 INFO : Done importing File Browser config
25 Jul 2024 13:23:54,868 INFO : Starting Sample Status Data import
25 Jul 2024 13:23:54,868 INFO : No sample types XAR file to process.
25 Jul 2024 13:23:54,868 INFO : Finished importing Sample Status Data
25 Jul 2024 13:23:54,875 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:54,880 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Jul 2024 13:23:54,880 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Jul 2024 13:23:54,881 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Jul 2024 13:23:54,882 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Jul 2024 13:23:54,882 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:23:54,883 INFO : Moving files to folder /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/Supersomes - CYP3A4 C239 and creating symlinks
25 Jul 2024 13:23:54,963 INFO : Aligning data files urls in folder: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data/Supersomes - CYP3A4 C239
25 Jul 2024 13:23:54,964 INFO : Done importing folder archive for Supersomes - CYP3A4 C239
25 Jul 2024 13:23:54,964 INFO : Done importing subfolders and container tabs
25 Jul 2024 13:23:54,965 INFO : Moving files to folder /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data and creating symlinks
25 Jul 2024 13:23:54,968 INFO : Aligning data files urls in folder: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DDA Data
25 Jul 2024 13:23:54,968 INFO : Done importing folder archive for DDA Data
25 Jul 2024 13:23:55,066 INFO : New folder created with inherited permissions: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DIA Data
25 Jul 2024 13:23:55,066 INFO : Loading folder archive for DIA Data
25 Jul 2024 13:23:55,068 INFO : Loading folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:55,163 INFO : Done importing folder properties (folder type, settings and active modules)
25 Jul 2024 13:23:55,165 INFO : Loading container specific module properties
25 Jul 2024 13:23:55,171 INFO : Done importing container specific module properties
25 Jul 2024 13:23:55,173 INFO : Loading queries
25 Jul 2024 13:23:55,177 INFO : 1 query imported
25 Jul 2024 13:23:55,177 INFO : Done importing queries
25 Jul 2024 13:23:55,179 INFO : Loading etl definitions
25 Jul 2024 13:23:55,181 INFO : Loading wikis
25 Jul 2024 13:23:55,182 INFO : 0 wikis imported
25 Jul 2024 13:23:55,182 INFO : Done importing wikis
25 Jul 2024 13:23:55,184 INFO : Starting Data Class Importer
25 Jul 2024 13:23:55,184 INFO : No types XAR file to process.
25 Jul 2024 13:23:55,184 INFO : Finished Data Class Importer
25 Jul 2024 13:23:55,185 INFO : Starting to copy files
25 Jul 2024 13:23:55,185 INFO : Copied 0 files
25 Jul 2024 13:23:55,185 INFO : Ensuring exp.data rows exist for imported files
25 Jul 2024 13:23:55,192 INFO : Starting Sample Type Importer
25 Jul 2024 13:23:55,192 INFO : No types XAR file to process.
25 Jul 2024 13:23:55,192 INFO : Finished Sample Type Importer
25 Jul 2024 13:23:55,194 INFO : Loading xar
25 Jul 2024 13:23:58,887 INFO : Starting import from Supersome-CYP2C8-C225-quant.sky.zip
25 Jul 2024 13:23:58,891 INFO : Starting to import Skyline document from Supersome-CYP2C8-C225-quant.sky.zip
25 Jul 2024 13:23:58,891 INFO : Expanding CYP2C8-spectral-library.blib
25 Jul 2024 13:23:59,272 INFO : Expanding 2024_Raloxifene_paper_CYP2C8_quant.skyd
25 Jul 2024 13:23:59,436 INFO : Expanding 2024_Raloxifene_paper_CYP2C8_quant.sky.view
25 Jul 2024 13:23:59,437 INFO : Expanding 2024_Raloxifene_paper_CYP2C8_quant.sky
25 Jul 2024 13:23:59,444 INFO : Expanding 2024_Raloxifene_paper_CYP2C8_quant.skyl
25 Jul 2024 13:23:59,446 INFO : Reading Skyline file, 2024_Raloxifene_paper_CYP2C8_quant.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Jul 2024 13:23:59,471 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Jul 2024 13:23:59,474 INFO : 1% Done
25 Jul 2024 13:23:59,812 INFO : Inserting sp|P10632|CP2C8_HUMAN
25 Jul 2024 13:23:59,820 INFO : 2% Done
25 Jul 2024 13:23:59,852 INFO : 3% Done
25 Jul 2024 13:23:59,877 INFO : 4% Done
25 Jul 2024 13:23:59,896 INFO : 5% Done
25 Jul 2024 13:23:59,919 INFO : 6% Done
25 Jul 2024 13:23:59,937 INFO : 7% Done
25 Jul 2024 13:23:59,964 INFO : 8% Done
25 Jul 2024 13:23:59,974 INFO : 9% Done
25 Jul 2024 13:24:00,005 INFO : 10% Done
25 Jul 2024 13:24:00,016 INFO : 11% Done
25 Jul 2024 13:24:00,040 INFO : 12% Done
25 Jul 2024 13:24:00,064 INFO : 13% Done
25 Jul 2024 13:24:00,075 INFO : 14% Done
25 Jul 2024 13:24:00,113 INFO : 15% Done
25 Jul 2024 13:24:00,133 INFO : 16% Done
25 Jul 2024 13:24:00,160 INFO : 17% Done
25 Jul 2024 13:24:00,180 INFO : 18% Done
25 Jul 2024 13:24:00,198 INFO : 19% Done
25 Jul 2024 13:24:00,219 INFO : 20% Done
25 Jul 2024 13:24:00,251 INFO : 21% Done
25 Jul 2024 13:24:00,294 INFO : 22% Done
25 Jul 2024 13:24:00,308 INFO : 23% Done
25 Jul 2024 13:24:00,340 INFO : 24% Done
25 Jul 2024 13:24:00,356 INFO : 25% Done
25 Jul 2024 13:24:00,398 INFO : 26% Done
25 Jul 2024 13:24:00,427 INFO : 27% Done
25 Jul 2024 13:24:00,457 INFO : 28% Done
25 Jul 2024 13:24:00,491 INFO : 29% Done
25 Jul 2024 13:24:00,513 INFO : 30% Done
25 Jul 2024 13:24:00,536 INFO : 31% Done
25 Jul 2024 13:24:00,569 INFO : 32% Done
25 Jul 2024 13:24:00,599 INFO : 33% Done
25 Jul 2024 13:24:00,623 INFO : 34% Done
25 Jul 2024 13:24:00,659 INFO : 35% Done
25 Jul 2024 13:24:00,695 INFO : 36% Done
25 Jul 2024 13:24:00,720 INFO : 37% Done
25 Jul 2024 13:24:00,753 INFO : 38% Done
25 Jul 2024 13:24:00,777 INFO : 39% Done
25 Jul 2024 13:24:00,801 INFO : Inserting sp|P16435|NCPR_HUMAN
25 Jul 2024 13:24:00,808 INFO : 40% Done
25 Jul 2024 13:24:00,841 INFO : 41% Done
25 Jul 2024 13:24:00,875 INFO : 42% Done
25 Jul 2024 13:24:00,897 INFO : 43% Done
25 Jul 2024 13:24:00,923 INFO : 44% Done
25 Jul 2024 13:24:00,958 INFO : 45% Done
25 Jul 2024 13:24:00,993 INFO : 46% Done
25 Jul 2024 13:24:01,016 INFO : 47% Done
25 Jul 2024 13:24:01,041 INFO : 48% Done
25 Jul 2024 13:24:01,078 INFO : 49% Done
25 Jul 2024 13:24:01,101 INFO : 50% Done
25 Jul 2024 13:24:01,144 INFO : 51% Done
25 Jul 2024 13:24:01,155 INFO : 52% Done
25 Jul 2024 13:24:01,188 INFO : 53% Done
25 Jul 2024 13:24:01,205 INFO : 54% Done
25 Jul 2024 13:24:01,220 INFO : 55% Done
25 Jul 2024 13:24:01,240 INFO : 56% Done
25 Jul 2024 13:24:01,268 INFO : 57% Done
25 Jul 2024 13:24:01,291 INFO : 58% Done
25 Jul 2024 13:24:01,310 INFO : 59% Done
25 Jul 2024 13:24:01,335 INFO : 60% Done
25 Jul 2024 13:24:01,360 INFO : 61% Done
25 Jul 2024 13:24:01,376 INFO : 62% Done
25 Jul 2024 13:24:01,394 INFO : 63% Done
25 Jul 2024 13:24:01,420 INFO : 64% Done
25 Jul 2024 13:24:01,437 INFO : 65% Done
25 Jul 2024 13:24:01,464 INFO : 66% Done
25 Jul 2024 13:24:01,475 INFO : 67% Done
25 Jul 2024 13:24:01,504 INFO : Inserting sp|P00167|CYB5_HUMAN
25 Jul 2024 13:24:01,510 INFO : 68% Done
25 Jul 2024 13:24:01,528 INFO : 69% Done
25 Jul 2024 13:24:01,544 INFO : 70% Done
25 Jul 2024 13:24:01,562 INFO : 71% Done
25 Jul 2024 13:24:01,583 INFO : Inserting sp|P00924|ENO1_YEAST
25 Jul 2024 13:24:01,598 INFO : 72% Done
25 Jul 2024 13:24:01,615 INFO : 73% Done
25 Jul 2024 13:24:01,633 INFO : 74% Done
25 Jul 2024 13:24:01,683 INFO : 75% Done
25 Jul 2024 13:24:01,700 INFO : 76% Done
25 Jul 2024 13:24:01,716 INFO : 77% Done
25 Jul 2024 13:24:01,736 INFO : 78% Done
25 Jul 2024 13:24:01,767 INFO : 79% Done
25 Jul 2024 13:24:01,786 INFO : 80% Done
25 Jul 2024 13:24:01,806 INFO : 81% Done
25 Jul 2024 13:24:01,831 INFO : 82% Done
25 Jul 2024 13:24:01,849 INFO : 83% Done
25 Jul 2024 13:24:01,866 INFO : 84% Done
25 Jul 2024 13:24:01,885 INFO : 85% Done
25 Jul 2024 13:24:01,921 INFO : 86% Done
25 Jul 2024 13:24:01,939 INFO : 87% Done
25 Jul 2024 13:24:01,967 INFO : 88% Done
25 Jul 2024 13:24:01,984 INFO : 89% Done
25 Jul 2024 13:24:02,001 INFO : 90% Done
25 Jul 2024 13:24:02,020 INFO : 91% Done
25 Jul 2024 13:24:02,043 INFO : 92% Done
25 Jul 2024 13:24:02,062 INFO : Inserting PRTC
25 Jul 2024 13:24:02,074 INFO : 93% Done
25 Jul 2024 13:24:02,090 INFO : 94% Done
25 Jul 2024 13:24:02,113 INFO : 95% Done
25 Jul 2024 13:24:02,129 INFO : 96% Done
25 Jul 2024 13:24:02,153 INFO : 97% Done
25 Jul 2024 13:24:02,168 INFO : 98% Done
25 Jul 2024 13:24:02,183 INFO : Done parsing Skyline document.
25 Jul 2024 13:24:02,216 INFO : Creating and populating temp tables for Proportion values
25 Jul 2024 13:24:02,226 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Jul 2024 13:24:02,259 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Jul 2024 13:24:02,285 INFO : Cleaning up temp tables
25 Jul 2024 13:24:02,286 INFO : Completed import of Skyline document from Supersome-CYP2C8-C225-quant.sky.zip
25 Jul 2024 13:24:02,298 INFO : 100% Done
25 Jul 2024 13:24:02,316 INFO : Starting import from Supersome-CYP2C9-C216-quant.sky.zip
25 Jul 2024 13:24:02,319 INFO : Starting to import Skyline document from Supersome-CYP2C9-C216-quant.sky.zip
25 Jul 2024 13:24:02,320 INFO : Expanding spectral-library-all-supersomes-try3-TPP.blib
25 Jul 2024 13:24:03,081 INFO : Expanding spectral-library-CYP2C9-C216-d4-only.blib
25 Jul 2024 13:24:03,082 INFO : Expanding 2024_Raloxifene_paper_supersome_quant_CYP2C9_C216_only.skyd
25 Jul 2024 13:24:03,138 INFO : Expanding 2024_Raloxifene_paper_supersome_quant_CYP2C9_C216_only.sky.view
25 Jul 2024 13:24:03,139 INFO : Expanding 2024_Raloxifene_paper_supersome_quant_CYP2C9_C216_only.sky
25 Jul 2024 13:24:03,141 INFO : Expanding 2024_Raloxifene_paper_supersome_quant_CYP2C9_C216_only.skyl
25 Jul 2024 13:24:03,143 INFO : Reading Skyline file, 2024_Raloxifene_paper_supersome_quant_CYP2C9_C216_only.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Jul 2024 13:24:03,146 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Jul 2024 13:24:03,147 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
25 Jul 2024 13:24:03,149 INFO : 2% Done
25 Jul 2024 13:24:03,340 INFO : 4% Done
25 Jul 2024 13:24:03,340 INFO : Inserting sp|P11712|CP2C9_HUMAN
25 Jul 2024 13:24:03,348 INFO : 13% Done
25 Jul 2024 13:24:03,365 INFO : 18% Done
25 Jul 2024 13:24:03,376 INFO : 23% Done
25 Jul 2024 13:24:03,386 INFO : 27% Done
25 Jul 2024 13:24:03,397 INFO : 32% Done
25 Jul 2024 13:24:03,407 INFO : Inserting PRTC
25 Jul 2024 13:24:03,411 INFO : 37% Done
25 Jul 2024 13:24:03,420 INFO : 41% Done
25 Jul 2024 13:24:03,430 INFO : 46% Done
25 Jul 2024 13:24:03,438 INFO : 50% Done
25 Jul 2024 13:24:03,446 INFO : 54% Done
25 Jul 2024 13:24:03,455 INFO : 59% Done
25 Jul 2024 13:24:03,463 INFO : 63% Done
25 Jul 2024 13:24:03,471 INFO : 68% Done
25 Jul 2024 13:24:03,478 INFO : 72% Done
25 Jul 2024 13:24:03,486 INFO : 76% Done
25 Jul 2024 13:24:03,495 INFO : 80% Done
25 Jul 2024 13:24:03,505 INFO : 85% Done
25 Jul 2024 13:24:03,514 INFO : 89% Done
25 Jul 2024 13:24:03,524 INFO : 94% Done
25 Jul 2024 13:24:03,534 INFO : 98% Done
25 Jul 2024 13:24:03,541 INFO : Done parsing Skyline document.
25 Jul 2024 13:24:03,567 INFO : Creating and populating temp tables for Proportion values
25 Jul 2024 13:24:03,574 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Jul 2024 13:24:03,579 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Jul 2024 13:24:03,583 INFO : Cleaning up temp tables
25 Jul 2024 13:24:03,584 INFO : Completed import of Skyline document from Supersome-CYP2C9-C216-quant.sky.zip
25 Jul 2024 13:24:03,589 INFO : 100% Done
25 Jul 2024 13:24:03,597 INFO : Starting import from Supersome-CYP3A4-C239-chromatography-optimization.sky.zip
25 Jul 2024 13:24:03,599 INFO : Starting to import Skyline document from Supersome-CYP3A4-C239-chromatography-optimization.sky.zip
25 Jul 2024 13:24:03,609 INFO : Expanding limelight-searches-6109-6110-6112_AZ1084-92-MM-chrom-testing.blib
25 Jul 2024 13:24:03,935 INFO : Expanding AZ1084-92-MM-CYP3A4-C239-HighB-Grad.skyd
25 Jul 2024 13:24:04,026 INFO : Expanding AZ1084-92-MM-CYP3A4-C239-HighB-Grad.sky.view
25 Jul 2024 13:24:04,027 INFO : Expanding AZ1084-92-MM-CYP3A4-C239-HighB-Grad.sky
25 Jul 2024 13:24:04,031 INFO : Expanding AZ1084-92-MM-CYP3A4-C239-HighB-Grad.skyl
25 Jul 2024 13:24:04,040 INFO : Reading Skyline file, AZ1084-92-MM-CYP3A4-C239-HighB-Grad.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Jul 2024 13:24:04,050 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Jul 2024 13:24:04,053 INFO : 2% Done
25 Jul 2024 13:24:04,305 INFO : Inserting CP3A4_general
25 Jul 2024 13:24:04,312 INFO : 3% Done
25 Jul 2024 13:24:04,331 INFO : 5% Done
25 Jul 2024 13:24:04,348 INFO : 6% Done
25 Jul 2024 13:24:04,363 INFO : 7% Done
25 Jul 2024 13:24:04,373 INFO : 8% Done
25 Jul 2024 13:24:04,383 INFO : 9% Done
25 Jul 2024 13:24:04,394 INFO : 10% Done
25 Jul 2024 13:24:04,417 INFO : 11% Done
25 Jul 2024 13:24:04,426 INFO : 12% Done
25 Jul 2024 13:24:04,436 INFO : 13% Done
25 Jul 2024 13:24:04,445 INFO : 14% Done
25 Jul 2024 13:24:04,456 INFO : 15% Done
25 Jul 2024 13:24:04,471 INFO : 16% Done
25 Jul 2024 13:24:04,482 INFO : 18% Done
25 Jul 2024 13:24:04,506 INFO : 19% Done
25 Jul 2024 13:24:04,517 INFO : 22% Done
25 Jul 2024 13:24:04,541 INFO : 23% Done
25 Jul 2024 13:24:04,556 INFO : 24% Done
25 Jul 2024 13:24:04,566 INFO : 25% Done
25 Jul 2024 13:24:04,591 INFO : 26% Done
25 Jul 2024 13:24:04,600 INFO : 27% Done
25 Jul 2024 13:24:04,609 INFO : 28% Done
25 Jul 2024 13:24:04,616 INFO : Inserting CP3A4_C236
25 Jul 2024 13:24:04,625 INFO : 31% Done
25 Jul 2024 13:24:04,657 INFO : 32% Done
25 Jul 2024 13:24:04,680 INFO : 35% Done
25 Jul 2024 13:24:04,710 INFO : 36% Done
25 Jul 2024 13:24:04,735 INFO : 38% Done
25 Jul 2024 13:24:04,759 INFO : 39% Done
25 Jul 2024 13:24:04,771 INFO : Inserting sp|P16435|NCPR_HUMAN
25 Jul 2024 13:24:04,777 INFO : 41% Done
25 Jul 2024 13:24:04,798 INFO : 42% Done
25 Jul 2024 13:24:04,820 INFO : 44% Done
25 Jul 2024 13:24:04,848 INFO : 45% Done
25 Jul 2024 13:24:04,860 INFO : 46% Done
25 Jul 2024 13:24:04,873 INFO : 47% Done
25 Jul 2024 13:24:04,894 INFO : 49% Done
25 Jul 2024 13:24:04,914 INFO : 51% Done
25 Jul 2024 13:24:04,934 INFO : 52% Done
25 Jul 2024 13:24:04,955 INFO : 54% Done
25 Jul 2024 13:24:04,982 INFO : 55% Done
25 Jul 2024 13:24:04,995 INFO : 56% Done
25 Jul 2024 13:24:05,014 INFO : 58% Done
25 Jul 2024 13:24:05,034 INFO : 59% Done
25 Jul 2024 13:24:05,047 INFO : 60% Done
25 Jul 2024 13:24:05,068 INFO : 61% Done
25 Jul 2024 13:24:05,089 INFO : 63% Done
25 Jul 2024 13:24:05,106 INFO : 64% Done
25 Jul 2024 13:24:05,117 INFO : 65% Done
25 Jul 2024 13:24:05,134 INFO : 67% Done
25 Jul 2024 13:24:05,153 INFO : 68% Done
25 Jul 2024 13:24:05,166 INFO : 69% Done
25 Jul 2024 13:24:05,189 INFO : 71% Done
25 Jul 2024 13:24:05,202 INFO : 73% Done
25 Jul 2024 13:24:05,233 INFO : Inserting sp|P00167|CYB5_HUMAN
25 Jul 2024 13:24:05,238 INFO : 74% Done
25 Jul 2024 13:24:05,257 INFO : 75% Done
25 Jul 2024 13:24:05,268 INFO : 76% Done
25 Jul 2024 13:24:05,284 INFO : 78% Done
25 Jul 2024 13:24:05,295 INFO : 79% Done
25 Jul 2024 13:24:05,313 INFO : 80% Done
25 Jul 2024 13:24:05,321 INFO : Inserting sp|P00924|ENO1_YEAST
25 Jul 2024 13:24:05,326 INFO : 81% Done
25 Jul 2024 13:24:05,346 INFO : 82% Done
25 Jul 2024 13:24:05,358 INFO : 83% Done
25 Jul 2024 13:24:05,370 INFO : 84% Done
25 Jul 2024 13:24:05,383 INFO : 86% Done
25 Jul 2024 13:24:05,405 INFO : 87% Done
25 Jul 2024 13:24:05,429 INFO : 89% Done
25 Jul 2024 13:24:05,451 INFO : 90% Done
25 Jul 2024 13:24:05,474 INFO : 92% Done
25 Jul 2024 13:24:05,494 INFO : 93% Done
25 Jul 2024 13:24:05,506 INFO : 94% Done
25 Jul 2024 13:24:05,518 INFO : 95% Done
25 Jul 2024 13:24:05,528 INFO : Inserting CYP3A4 synthetic labeled peptides
25 Jul 2024 13:24:05,533 INFO : 96% Done
25 Jul 2024 13:24:05,543 INFO : Inserting PRTC
25 Jul 2024 13:24:05,547 INFO : 97% Done
25 Jul 2024 13:24:05,557 INFO : 98% Done
25 Jul 2024 13:24:05,573 INFO : Done parsing Skyline document.
25 Jul 2024 13:24:06,002 INFO : Creating and populating temp tables for Proportion values
25 Jul 2024 13:24:06,010 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Jul 2024 13:24:06,026 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Jul 2024 13:24:06,035 INFO : Cleaning up temp tables
25 Jul 2024 13:24:06,037 INFO : Completed import of Skyline document from Supersome-CYP3A4-C239-chromatography-optimization.sky.zip
25 Jul 2024 13:24:06,046 INFO : 100% Done
25 Jul 2024 13:24:06,056 INFO : Starting import from All_HLM_quant_Main_Figure.sky.zip
25 Jul 2024 13:24:06,058 INFO : Starting to import Skyline document from All_HLM_quant_Main_Figure.sky.zip
25 Jul 2024 13:24:06,058 INFO : Expanding AZ905-910-searches-5762-5763-5764-5765-5766-5767.blib
25 Jul 2024 13:24:07,422 INFO : Expanding 2024_Raloxifene_paper_HLM_quant.skyd
25 Jul 2024 13:24:08,067 INFO : Expanding 2024_Raloxifene_paper_HLM_quant.sky.view
25 Jul 2024 13:24:08,068 INFO : Expanding 2024_Raloxifene_paper_HLM_quant.sky
25 Jul 2024 13:24:08,107 INFO : Expanding 2024_Raloxifene_paper_HLM_quant.skyl
25 Jul 2024 13:24:08,112 INFO : Reading Skyline file, 2024_Raloxifene_paper_HLM_quant.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Jul 2024 13:24:08,292 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Jul 2024 13:24:08,293 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
25 Jul 2024 13:24:09,298 INFO : Inserting sp|P08684|CP3A4_HUMAN
25 Jul 2024 13:24:09,308 INFO : 1% Done
25 Jul 2024 13:24:09,406 INFO : 2% Done
25 Jul 2024 13:24:09,493 INFO : 3% Done
25 Jul 2024 13:24:09,596 INFO : 4% Done
25 Jul 2024 13:24:09,672 INFO : 5% Done
25 Jul 2024 13:24:09,795 INFO : 6% Done
25 Jul 2024 13:24:09,878 INFO : 7% Done
25 Jul 2024 13:24:09,975 INFO : 8% Done
25 Jul 2024 13:24:10,037 INFO : 9% Done
25 Jul 2024 13:24:10,142 INFO : 10% Done
25 Jul 2024 13:24:10,276 INFO : 11% Done
25 Jul 2024 13:24:10,368 INFO : 12% Done
25 Jul 2024 13:24:10,447 INFO : 13% Done
25 Jul 2024 13:24:10,532 INFO : 14% Done
25 Jul 2024 13:24:10,636 INFO : 15% Done
25 Jul 2024 13:24:10,742 INFO : 16% Done
25 Jul 2024 13:24:10,843 INFO : 17% Done
25 Jul 2024 13:24:10,900 INFO : Inserting sp|P11712|CP2C9_HUMAN
25 Jul 2024 13:24:10,951 INFO : 18% Done
25 Jul 2024 13:24:11,058 INFO : 19% Done
25 Jul 2024 13:24:11,194 INFO : 20% Done
25 Jul 2024 13:24:11,266 INFO : 21% Done
25 Jul 2024 13:24:11,398 INFO : 22% Done
25 Jul 2024 13:24:11,490 INFO : 23% Done
25 Jul 2024 13:24:11,579 INFO : 24% Done
25 Jul 2024 13:24:11,680 INFO : 25% Done
25 Jul 2024 13:24:11,823 INFO : 26% Done
25 Jul 2024 13:24:11,932 INFO : 27% Done
25 Jul 2024 13:24:11,949 INFO : Inserting sp|P10632|CP2C8_HUMAN
25 Jul 2024 13:24:12,008 INFO : 28% Done
25 Jul 2024 13:24:12,105 INFO : 29% Done
25 Jul 2024 13:24:12,178 INFO : 30% Done
25 Jul 2024 13:24:12,253 INFO : 31% Done
25 Jul 2024 13:24:12,341 INFO : 32% Done
25 Jul 2024 13:24:12,423 INFO : 33% Done
25 Jul 2024 13:24:12,512 INFO : 34% Done
25 Jul 2024 13:24:12,575 INFO : 35% Done
25 Jul 2024 13:24:12,647 INFO : 36% Done
25 Jul 2024 13:24:12,739 INFO : 37% Done
25 Jul 2024 13:24:12,798 INFO : 38% Done
25 Jul 2024 13:24:12,892 INFO : 39% Done
25 Jul 2024 13:24:12,966 INFO : Inserting sp|P33261|CP2CJ_HUMAN
25 Jul 2024 13:24:12,972 INFO : 40% Done
25 Jul 2024 13:24:13,048 INFO : 41% Done
25 Jul 2024 13:24:13,131 INFO : 42% Done
25 Jul 2024 13:24:13,214 INFO : 43% Done
25 Jul 2024 13:24:13,290 INFO : 44% Done
25 Jul 2024 13:24:13,389 INFO : 45% Done
25 Jul 2024 13:24:13,443 INFO : 46% Done
25 Jul 2024 13:24:13,555 INFO : 47% Done
25 Jul 2024 13:24:13,596 INFO : Inserting sp|P10620|MGST1_HUMAN
25 Jul 2024 13:24:13,640 INFO : 48% Done
25 Jul 2024 13:24:13,730 INFO : 49% Done
25 Jul 2024 13:24:13,820 INFO : 50% Done
25 Jul 2024 13:24:13,899 INFO : 51% Done
25 Jul 2024 13:24:13,931 INFO : Inserting sp|P08319|ADH4_HUMAN
25 Jul 2024 13:24:13,993 INFO : 52% Done
25 Jul 2024 13:24:14,073 INFO : 53% Done
25 Jul 2024 13:24:14,163 INFO : 54% Done
25 Jul 2024 13:24:14,251 INFO : 55% Done
25 Jul 2024 13:24:14,338 INFO : 56% Done
25 Jul 2024 13:24:14,419 INFO : 57% Done
25 Jul 2024 13:24:14,497 INFO : 58% Done
25 Jul 2024 13:24:14,517 INFO : Inserting PRTC
25 Jul 2024 13:24:14,589 INFO : 59% Done
25 Jul 2024 13:24:14,668 INFO : 60% Done
25 Jul 2024 13:24:14,690 INFO : Inserting sp|P00761|TRYP_PIG
25 Jul 2024 13:24:14,719 INFO : Inserting sp|P00325|ADH1B_HUMAN
25 Jul 2024 13:24:14,760 INFO : 61% Done
25 Jul 2024 13:24:14,839 INFO : 62% Done
25 Jul 2024 13:24:14,915 INFO : 63% Done
25 Jul 2024 13:24:14,999 INFO : 64% Done
25 Jul 2024 13:24:15,087 INFO : 65% Done
25 Jul 2024 13:24:15,174 INFO : 66% Done
25 Jul 2024 13:24:15,249 INFO : Inserting sp|Q9H8H3|TMT1A_HUMAN
25 Jul 2024 13:24:15,255 INFO : 67% Done
25 Jul 2024 13:24:15,324 INFO : 68% Done
25 Jul 2024 13:24:15,411 INFO : 69% Done
25 Jul 2024 13:24:15,474 INFO : 70% Done
25 Jul 2024 13:24:15,537 INFO : Inserting sp|P60709|ACTB_HUMAN
25 Jul 2024 13:24:15,574 INFO : 71% Done
25 Jul 2024 13:24:15,642 INFO : 72% Done
25 Jul 2024 13:24:15,696 INFO : 73% Done
25 Jul 2024 13:24:15,792 INFO : 74% Done
25 Jul 2024 13:24:15,947 INFO : 75% Done
25 Jul 2024 13:24:16,020 INFO : 76% Done
25 Jul 2024 13:24:16,037 INFO : Inserting sp|Q71U36|TBA1A_HUMAN
25 Jul 2024 13:24:16,111 INFO : 77% Done
25 Jul 2024 13:24:16,188 INFO : 78% Done
25 Jul 2024 13:24:16,258 INFO : 79% Done
25 Jul 2024 13:24:16,332 INFO : 80% Done
25 Jul 2024 13:24:16,420 INFO : 81% Done
25 Jul 2024 13:24:16,497 INFO : 82% Done
25 Jul 2024 13:24:16,583 INFO : 83% Done
25 Jul 2024 13:24:16,622 INFO : Inserting sp|Q9H4B7|TBB1_HUMAN
25 Jul 2024 13:24:16,676 INFO : 84% Done
25 Jul 2024 13:24:16,756 INFO : Inserting sp|P00924|ENO1_YEAST
25 Jul 2024 13:24:16,765 INFO : 85% Done
25 Jul 2024 13:24:16,831 INFO : 86% Done
25 Jul 2024 13:24:16,921 INFO : 87% Done
25 Jul 2024 13:24:17,009 INFO : 88% Done
25 Jul 2024 13:24:17,095 INFO : 89% Done
25 Jul 2024 13:24:17,173 INFO : 90% Done
25 Jul 2024 13:24:17,255 INFO : 91% Done
25 Jul 2024 13:24:17,336 INFO : 92% Done
25 Jul 2024 13:24:17,418 INFO : 93% Done
25 Jul 2024 13:24:17,472 INFO : Inserting sp|P04406|G3P_HUMAN
25 Jul 2024 13:24:17,513 INFO : 94% Done
25 Jul 2024 13:24:17,588 INFO : 95% Done
25 Jul 2024 13:24:17,682 INFO : 96% Done
25 Jul 2024 13:24:17,755 INFO : 97% Done
25 Jul 2024 13:24:17,847 INFO : 98% Done
25 Jul 2024 13:24:17,889 INFO : Done parsing Skyline document.
25 Jul 2024 13:24:17,923 INFO : Creating and populating temp tables for Proportion values
25 Jul 2024 13:24:17,965 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Jul 2024 13:24:18,156 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Jul 2024 13:24:18,244 INFO : Cleaning up temp tables
25 Jul 2024 13:24:18,245 INFO : Completed import of Skyline document from All_HLM_quant_Main_Figure.sky.zip
25 Jul 2024 13:24:18,252 INFO : 100% Done
25 Jul 2024 13:24:18,271 INFO : Done importing xar
25 Jul 2024 13:24:18,273 INFO : Loading pages and webpart properties
25 Jul 2024 13:24:18,320 INFO : Done importing 2 page(s) with 4 webpart(s)
25 Jul 2024 13:24:18,320 INFO : Loading File Browser config
25 Jul 2024 13:24:18,320 INFO : Done importing File Browser config
25 Jul 2024 13:24:18,322 INFO : Starting Sample Status Data import
25 Jul 2024 13:24:18,322 INFO : No sample types XAR file to process.
25 Jul 2024 13:24:18,322 INFO : Finished importing Sample Status Data
25 Jul 2024 13:24:18,328 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:24:18,331 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Jul 2024 13:24:18,331 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Jul 2024 13:24:18,332 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Jul 2024 13:24:18,332 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Jul 2024 13:24:18,332 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:24:18,333 INFO : Moving files to folder /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DIA Data and creating symlinks
25 Jul 2024 13:24:18,707 INFO : Aligning data files urls in folder: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/DIA Data
25 Jul 2024 13:24:18,729 INFO : Done importing folder archive for DIA Data
25 Jul 2024 13:24:18,793 INFO : New folder created with inherited permissions: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/FASTA files
25 Jul 2024 13:24:18,793 INFO : Loading folder archive for FASTA files
25 Jul 2024 13:24:18,794 INFO : Loading folder properties (folder type, settings and active modules)
25 Jul 2024 13:24:18,855 INFO : Done importing folder properties (folder type, settings and active modules)
25 Jul 2024 13:24:18,856 INFO : Loading container specific module properties
25 Jul 2024 13:24:18,860 INFO : Done importing container specific module properties
25 Jul 2024 13:24:18,861 INFO : Loading queries
25 Jul 2024 13:24:18,865 INFO : 1 query imported
25 Jul 2024 13:24:18,865 INFO : Done importing queries
25 Jul 2024 13:24:18,866 INFO : Loading etl definitions
25 Jul 2024 13:24:18,867 INFO : Loading wikis
25 Jul 2024 13:24:18,868 INFO : 0 wikis imported
25 Jul 2024 13:24:18,869 INFO : Done importing wikis
25 Jul 2024 13:24:18,870 INFO : Starting Data Class Importer
25 Jul 2024 13:24:18,870 INFO : No types XAR file to process.
25 Jul 2024 13:24:18,870 INFO : Finished Data Class Importer
25 Jul 2024 13:24:18,871 INFO : Starting to copy files
25 Jul 2024 13:24:18,871 INFO : Copied 0 files
25 Jul 2024 13:24:18,871 INFO : Ensuring exp.data rows exist for imported files
25 Jul 2024 13:24:18,877 INFO : Starting Sample Type Importer
25 Jul 2024 13:24:18,877 INFO : No types XAR file to process.
25 Jul 2024 13:24:18,877 INFO : Finished Sample Type Importer
25 Jul 2024 13:24:18,878 INFO : Loading xar
25 Jul 2024 13:24:18,883 INFO : Done importing xar
25 Jul 2024 13:24:18,884 INFO : Loading pages and webpart properties
25 Jul 2024 13:24:18,955 INFO : Done importing 3 page(s) with 3 webpart(s)
25 Jul 2024 13:24:18,955 INFO : Loading File Browser config
25 Jul 2024 13:24:18,955 INFO : Done importing File Browser config
25 Jul 2024 13:24:18,956 INFO : Starting Sample Status Data import
25 Jul 2024 13:24:18,956 INFO : No sample types XAR file to process.
25 Jul 2024 13:24:18,956 INFO : Finished importing Sample Status Data
25 Jul 2024 13:24:18,961 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:24:18,982 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Jul 2024 13:24:18,983 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Jul 2024 13:24:18,983 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Jul 2024 13:24:18,984 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Jul 2024 13:24:18,984 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Jul 2024 13:24:18,985 INFO : Moving files to folder /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/FASTA files and creating symlinks
25 Jul 2024 13:24:19,018 INFO : Aligning data files urls in folder: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper/FASTA files
25 Jul 2024 13:24:19,018 INFO : Done importing folder archive for FASTA files
25 Jul 2024 13:24:19,018 INFO : Done importing subfolders and container tabs
25 Jul 2024 13:24:19,019 INFO : Moving files to folder /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper and creating symlinks
25 Jul 2024 13:24:19,022 INFO : Aligning data files urls in folder: /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper
25 Jul 2024 13:24:19,025 INFO : Importing files metadata.
25 Jul 2024 13:24:19,033 INFO :
25 Jul 2024 13:24:19,033 INFO : Experiment import completed successfully.
25 Jul 2024 13:24:19,033 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
25 Jul 2024 13:24:19,064 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
25 Jul 2024 13:24:19,064 INFO :
25 Jul 2024 13:24:19,064 INFO : Checking for library folders.
25 Jul 2024 13:24:19,071 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
25 Jul 2024 13:24:19,094 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
25 Jul 2024 13:24:19,094 INFO :
25 Jul 2024 13:24:19,094 INFO : Finishing up experiment copy.
25 Jul 2024 13:24:19,096 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/UW Isoherranen Lab - 2024 Drug-Protein Adducts Raloxifene Paper
25 Jul 2024 13:24:19,097 INFO : Setting version on new experiment to 1
25 Jul 2024 13:24:19,100 INFO : Updating permanent link to point to the new copy of the data.
25 Jul 2024 13:24:19,129 INFO : Removing copy permissions given to Panorama Public
25 Jul 2024 13:24:19,136 INFO : Adding read permissions to all users that are folder admins in the source folder.
25 Jul 2024 13:24:19,137 INFO : Assigning ReaderRole to azelter@uw.edu
25 Jul 2024 13:24:19,137 INFO : Assigning ReaderRole to ni2@uw.edu
25 Jul 2024 13:24:19,137 INFO : Assigning PanoramaPublicSubmitterRole to azelter@uw.edu
25 Jul 2024 13:24:19,137 INFO : Assigning PanoramaPublicSubmitterRole to ni2@uw.edu
25 Jul 2024 13:24:19,143 INFO : User azelter@uw.edu is already a member of group Panorama Public Submitters
25 Jul 2024 13:24:19,143 INFO : Adding user ni2@uw.edu to group Panorama Public Submitters
25 Jul 2024 13:24:19,145 INFO : Updating the 'Raw Data' tab configuration
25 Jul 2024 13:24:19,149 INFO : Creating a reviewer account.
25 Jul 2024 13:24:19,226 INFO : Created reviewer with email: panorama+reviewer280@proteinms.net
25 Jul 2024 13:24:19,226 INFO : Generating password.
25 Jul 2024 13:24:19,369 INFO : Set reviewer password successfully.
25 Jul 2024 13:24:19,375 INFO : Adding user panorama+reviewer280@proteinms.net to group Reviewers
25 Jul 2024 13:24:19,377 INFO : Hiding the Data Pipeline tab.
25 Jul 2024 13:24:19,401 INFO : Updating Submission. Setting copiedExperimentId to 1881
25 Jul 2024 13:24:24,812 INFO : Assigning a ProteomeXchange ID.
25 Jul 2024 13:24:33,350 INFO : Assigned ProteomeXchange ID: PXD054246
25 Jul 2024 13:24:33,350 INFO : Assigning a DOI.
25 Jul 2024 13:24:34,077 INFO : Assigned DOI: 10.6069/2mwt-7452
25 Jul 2024 13:24:34,215 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'