26 Jan 2024 16:43:14,579 INFO : Copying experiment "Fecal Microbiota Transplant_Bile Acid" from folder /UNC - Baker Lab/FMT Bile Acid to /Panorama Public/2024/UNC Baker Lab - FMT Bile Acid
26 Jan 2024 16:43:14,579 INFO : =======================================
26 Jan 2024 16:43:14,594 DEBUG: Resetting Job ID: f8af5b63-9eda-103c-b9a2-fea6ddf51bb6
26 Jan 2024 16:43:41,555 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
26 Jan 2024 16:43:41,555 INFO : 
26 Jan 2024 16:43:41,555 INFO : Exporting experiment.
26 Jan 2024 16:43:46,557 INFO : Exporting files metadata.
26 Jan 2024 16:43:46,557 DEBUG: [/UNC - Baker Lab/FMT Bile Acid]  Writing files metadata to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/export
26 Jan 2024 16:43:46,559 INFO : 
26 Jan 2024 16:43:46,559 INFO : Experiment export completed successfully.
26 Jan 2024 16:43:46,560 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
26 Jan 2024 16:43:46,581 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
26 Jan 2024 16:43:46,581 INFO : 
26 Jan 2024 16:43:46,581 INFO : Importing experiment.
26 Jan 2024 16:43:46,583 DEBUG: [/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid] Importing folder properties from: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/export
26 Jan 2024 16:43:46,584 INFO : Loading folder properties (folder type, settings and active modules)
26 Jan 2024 16:43:46,584 DEBUG: [/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid] Folder type: Targeted MS
26 Jan 2024 16:43:46,585 DEBUG: [/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid] Active modules: Announcements, FileContent, Pipeline, Wiki, Search, API, PanoramaPublic, TargetedMS, Issues, Experiment, Core, Query, Assay, MS2
26 Jan 2024 16:43:46,643 INFO : Done importing folder properties (folder type, settings and active modules)
26 Jan 2024 16:43:46,644 INFO : Loading container specific module properties
26 Jan 2024 16:43:46,647 INFO : Done importing container specific module properties
26 Jan 2024 16:43:46,648 INFO : Loading etl definitions
26 Jan 2024 16:43:46,649 INFO : Loading wikis
26 Jan 2024 16:43:46,650 INFO : 0 wikis imported
26 Jan 2024 16:43:46,650 INFO : Done importing wikis
26 Jan 2024 16:43:46,651 INFO : Starting Data Class Importer
26 Jan 2024 16:43:46,652 INFO : No types XAR file to process.
26 Jan 2024 16:43:46,652 INFO : Finished Data Class Importer
26 Jan 2024 16:43:46,652 INFO : Starting to copy files
26 Jan 2024 16:43:46,653 INFO : Copied 0 files
26 Jan 2024 16:43:46,653 INFO : Ensuring exp.data rows exist for imported files
26 Jan 2024 16:43:46,934 INFO : Starting Sample Type Importer
26 Jan 2024 16:43:46,935 INFO : No types XAR file to process.
26 Jan 2024 16:43:46,935 INFO : Finished Sample Type Importer
26 Jan 2024 16:43:46,936 INFO : Loading xar
26 Jan 2024 16:43:47,879 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip'
26 Jan 2024 16:43:47,881 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip.Core'
26 Jan 2024 16:43:47,883 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip.Output'
26 Jan 2024 16:43:47,883 DEBUG: Protocol import complete
26 Jan 2024 16:43:47,885 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-12556:Fecal+Microbiota+Transplant_Bile+Acid'
26 Jan 2024 16:43:47,885 DEBUG: Experiment/Run group import complete
26 Jan 2024 16:43:47,893 DEBUG: Protocol action set import complete
26 Jan 2024 16:43:47,901 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip'
26 Jan 2024 16:43:47,907 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-12556:dee839fc-8d6f-103c-b5a4-fea6ddf52354'
26 Jan 2024 16:43:47,910 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-12556:dee8388b-8d6f-103c-b5a4-fea6ddf52354'
26 Jan 2024 16:43:47,910 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip.Core'
26 Jan 2024 16:43:47,913 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip.Output'
26 Jan 2024 16:43:47,913 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-12556:dee83fce-8d6f-103c-b5a4-fea6ddf52354'
26 Jan 2024 16:43:47,918 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip'
26 Jan 2024 16:43:47,922 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-12556:692dbfd6-9e22-103c-b9a2-fea6ddf51bb6'
26 Jan 2024 16:43:47,926 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-12556:30b5b729-9e22-103c-b9a2-fea6ddf51bb6'
26 Jan 2024 16:43:47,926 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip.Core'
26 Jan 2024 16:43:47,927 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12556:TargetedMS.ImportSkyZip.Output'
26 Jan 2024 16:43:47,928 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-12556:692dc5ee-9e22-103c-b9a2-fea6ddf51bb6'
26 Jan 2024 16:43:47,935 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%20FMT%20Bile%20Acid/@files/export/xar/experiments_and_runs.xar.exploded/Run185013/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd into the system
26 Jan 2024 16:43:47,935 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%20FMT%20Bile%20Acid/@files/export/xar/experiments_and_runs.xar.exploded/Run185013/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd into the system
26 Jan 2024 16:43:47,935 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%20FMT%20Bile%20Acid/@files/export/xar/experiments_and_runs.xar.exploded/Run185013/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip into the system
26 Jan 2024 16:43:47,936 INFO : Starting import from 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip
26 Jan 2024 16:43:47,939 INFO : Starting to import Skyline document from 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip
26 Jan 2024 16:43:47,943 INFO : Expanding 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd
26 Jan 2024 16:43:48,111 INFO : Expanding 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky.view
26 Jan 2024 16:43:48,111 INFO : Expanding 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky
26 Jan 2024 16:43:48,122 INFO : Expanding 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyl
26 Jan 2024 16:43:48,347 INFO : 1% Done
26 Jan 2024 16:43:48,446 DEBUG: Starting to load chromatogram headers
26 Jan 2024 16:43:48,455 DEBUG: Done loading chromatogram headers
26 Jan 2024 16:43:48,656 INFO : Inserting Canonical Bile Acids_Isomers
26 Jan 2024 16:43:48,663 INFO : 3% Done
26 Jan 2024 16:43:48,722 INFO : 5% Done
26 Jan 2024 16:43:48,779 INFO : 8% Done
26 Jan 2024 16:43:48,835 INFO : 10% Done
26 Jan 2024 16:43:48,892 INFO : 13% Done
26 Jan 2024 16:43:48,947 INFO : 15% Done
26 Jan 2024 16:43:49,009 INFO : 17% Done
26 Jan 2024 16:43:49,070 INFO : 19% Done
26 Jan 2024 16:43:49,131 INFO : 21% Done
26 Jan 2024 16:43:49,194 INFO : 24% Done
26 Jan 2024 16:43:49,253 INFO : 25% Done
26 Jan 2024 16:43:49,314 INFO : 27% Done
26 Jan 2024 16:43:49,374 INFO : 29% Done
26 Jan 2024 16:43:49,437 INFO : 31% Done
26 Jan 2024 16:43:49,491 DEBUG: Total molecules inserted: 14
26 Jan 2024 16:43:49,491 INFO : Inserting Canonical Bile Acids_Isomers
26 Jan 2024 16:43:49,500 INFO : 34% Done
26 Jan 2024 16:43:49,562 INFO : 36% Done
26 Jan 2024 16:43:49,627 INFO : 38% Done
26 Jan 2024 16:43:49,681 DEBUG: Total molecules inserted: 3
26 Jan 2024 16:43:49,681 INFO : Inserting Canonical Bile Acids
26 Jan 2024 16:43:49,689 INFO : 40% Done
26 Jan 2024 16:43:49,749 INFO : 43% Done
26 Jan 2024 16:43:49,815 INFO : 45% Done
26 Jan 2024 16:43:49,883 INFO : 48% Done
26 Jan 2024 16:43:49,946 INFO : 50% Done
26 Jan 2024 16:43:50,010 INFO : 53% Done
26 Jan 2024 16:43:50,069 INFO : 55% Done
26 Jan 2024 16:43:50,130 INFO : 57% Done
26 Jan 2024 16:43:50,190 INFO : 59% Done
26 Jan 2024 16:43:50,252 INFO : 61% Done
26 Jan 2024 16:43:50,308 INFO : 63% Done
26 Jan 2024 16:43:50,368 INFO : 65% Done
26 Jan 2024 16:43:50,423 INFO : 67% Done
26 Jan 2024 16:43:50,483 INFO : 69% Done
26 Jan 2024 16:43:50,545 INFO : 71% Done
26 Jan 2024 16:43:50,609 INFO : 74% Done
26 Jan 2024 16:43:50,667 INFO : 75% Done
26 Jan 2024 16:43:50,732 INFO : 77% Done
26 Jan 2024 16:43:50,783 DEBUG: Total molecules inserted: 18
26 Jan 2024 16:43:50,783 INFO : Inserting Deuterated BA
26 Jan 2024 16:43:50,787 INFO : 78% Done
26 Jan 2024 16:43:50,814 INFO : 79% Done
26 Jan 2024 16:43:50,839 INFO : 81% Done
26 Jan 2024 16:43:50,867 INFO : 82% Done
26 Jan 2024 16:43:50,896 INFO : 83% Done
26 Jan 2024 16:43:50,925 INFO : 85% Done
26 Jan 2024 16:43:50,954 INFO : 86% Done
26 Jan 2024 16:43:50,982 INFO : 87% Done
26 Jan 2024 16:43:51,011 INFO : 89% Done
26 Jan 2024 16:43:51,037 INFO : 90% Done
26 Jan 2024 16:43:51,063 INFO : 91% Done
26 Jan 2024 16:43:51,088 INFO : 93% Done
26 Jan 2024 16:43:51,114 INFO : 94% Done
26 Jan 2024 16:43:51,140 INFO : 95% Done
26 Jan 2024 16:43:51,166 INFO : 97% Done
26 Jan 2024 16:43:51,190 INFO : 98% Done
26 Jan 2024 16:43:51,212 DEBUG: Total molecules inserted: 16
26 Jan 2024 16:43:51,214 INFO : Done parsing Skyline document.
26 Jan 2024 16:44:18,958 INFO : Creating and populating temp tables for Proportion values
26 Jan 2024 16:44:19,126 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
26 Jan 2024 16:44:19,270 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
26 Jan 2024 16:44:19,374 INFO : Cleaning up temp tables
26 Jan 2024 16:44:19,638 INFO : Completed import of Skyline document from 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip
26 Jan 2024 16:44:19,640 INFO : 100% Done
26 Jan 2024 16:44:19,646 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%20FMT%20Bile%20Acid/@files/export/xar/experiments_and_runs.xar.exploded/Run185013/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip into the system
26 Jan 2024 16:44:19,646 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%20FMT%20Bile%20Acid/@files/export/xar/experiments_and_runs.xar.exploded/Run189192/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd into the system
26 Jan 2024 16:44:19,646 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%20FMT%20Bile%20Acid/@files/export/xar/experiments_and_runs.xar.exploded/Run189192/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd into the system
26 Jan 2024 16:44:19,646 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%20FMT%20Bile%20Acid/@files/export/xar/experiments_and_runs.xar.exploded/Run189192/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip into the system
26 Jan 2024 16:44:19,647 INFO : Starting import from 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip
26 Jan 2024 16:44:19,648 INFO : Starting to import Skyline document from 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip
26 Jan 2024 16:44:19,649 INFO : Expanding 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd
26 Jan 2024 16:44:20,028 INFO : Expanding 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky.view
26 Jan 2024 16:44:20,029 INFO : Expanding 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky
26 Jan 2024 16:44:20,052 INFO : Expanding 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyl
26 Jan 2024 16:44:20,574 DEBUG: Starting to load chromatogram headers
26 Jan 2024 16:44:20,600 DEBUG: Done loading chromatogram headers
26 Jan 2024 16:44:20,793 INFO : Inserting MCBA Synthetic Conjugates
26 Jan 2024 16:44:20,803 INFO : 1% Done
26 Jan 2024 16:44:20,853 INFO : 2% Done
26 Jan 2024 16:44:20,896 INFO : 3% Done
26 Jan 2024 16:44:20,941 INFO : 4% Done
26 Jan 2024 16:44:20,991 INFO : 5% Done
26 Jan 2024 16:44:21,041 INFO : 6% Done
26 Jan 2024 16:44:21,090 INFO : 8% Done
26 Jan 2024 16:44:21,145 INFO : 9% Done
26 Jan 2024 16:44:21,196 INFO : 10% Done
26 Jan 2024 16:44:21,243 INFO : 11% Done
26 Jan 2024 16:44:21,337 INFO : 13% Done
26 Jan 2024 16:44:21,389 INFO : 14% Done
26 Jan 2024 16:44:21,435 INFO : 15% Done
26 Jan 2024 16:44:21,483 INFO : 16% Done
26 Jan 2024 16:44:21,533 INFO : 17% Done
26 Jan 2024 16:44:21,583 INFO : 18% Done
26 Jan 2024 16:44:21,632 INFO : 19% Done
26 Jan 2024 16:44:21,677 INFO : 20% Done
26 Jan 2024 16:44:21,720 INFO : 21% Done
26 Jan 2024 16:44:21,767 INFO : 22% Done
26 Jan 2024 16:44:21,809 INFO : 23% Done
26 Jan 2024 16:44:21,856 INFO : 24% Done
26 Jan 2024 16:44:21,900 INFO : 25% Done
26 Jan 2024 16:44:21,991 INFO : 26% Done
26 Jan 2024 16:44:22,043 INFO : 27% Done
26 Jan 2024 16:44:22,098 INFO : 28% Done
26 Jan 2024 16:44:22,150 INFO : 29% Done
26 Jan 2024 16:44:22,197 INFO : 30% Done
26 Jan 2024 16:44:22,251 INFO : 31% Done
26 Jan 2024 16:44:22,305 INFO : 32% Done
26 Jan 2024 16:44:22,352 INFO : 33% Done
26 Jan 2024 16:44:22,404 INFO : 34% Done
26 Jan 2024 16:44:22,458 INFO : 35% Done
26 Jan 2024 16:44:22,511 INFO : 36% Done
26 Jan 2024 16:44:22,563 INFO : 37% Done
26 Jan 2024 16:44:22,616 INFO : 38% Done
26 Jan 2024 16:44:22,671 INFO : 39% Done
26 Jan 2024 16:44:22,720 INFO : 40% Done
26 Jan 2024 16:44:22,766 INFO : 41% Done
26 Jan 2024 16:44:22,859 INFO : 42% Done
26 Jan 2024 16:44:22,907 INFO : 44% Done
26 Jan 2024 16:44:22,952 INFO : 45% Done
26 Jan 2024 16:44:23,001 INFO : 46% Done
26 Jan 2024 16:44:23,051 INFO : 47% Done
26 Jan 2024 16:44:23,097 INFO : 48% Done
26 Jan 2024 16:44:23,148 INFO : 49% Done
26 Jan 2024 16:44:23,200 INFO : 50% Done
26 Jan 2024 16:44:23,200 DEBUG: Inserted 50 molecules
26 Jan 2024 16:44:23,251 INFO : 51% Done
26 Jan 2024 16:44:23,295 INFO : 52% Done
26 Jan 2024 16:44:23,343 INFO : 53% Done
26 Jan 2024 16:44:23,443 INFO : 54% Done
26 Jan 2024 16:44:23,487 INFO : 55% Done
26 Jan 2024 16:44:23,541 INFO : 56% Done
26 Jan 2024 16:44:23,592 INFO : 57% Done
26 Jan 2024 16:44:23,643 INFO : 58% Done
26 Jan 2024 16:44:23,690 INFO : 59% Done
26 Jan 2024 16:44:23,742 INFO : 60% Done
26 Jan 2024 16:44:23,790 INFO : 61% Done
26 Jan 2024 16:44:23,835 INFO : 62% Done
26 Jan 2024 16:44:23,883 INFO : 63% Done
26 Jan 2024 16:44:23,930 INFO : 64% Done
26 Jan 2024 16:44:23,980 INFO : 65% Done
26 Jan 2024 16:44:24,032 INFO : 66% Done
26 Jan 2024 16:44:24,081 INFO : 67% Done
26 Jan 2024 16:44:24,132 INFO : 68% Done
26 Jan 2024 16:44:24,184 INFO : 69% Done
26 Jan 2024 16:44:24,236 INFO : 70% Done
26 Jan 2024 16:44:24,285 INFO : 71% Done
26 Jan 2024 16:44:24,333 INFO : 72% Done
26 Jan 2024 16:44:24,377 INFO : 73% Done
26 Jan 2024 16:44:24,422 INFO : 74% Done
26 Jan 2024 16:44:24,539 INFO : 75% Done
26 Jan 2024 16:44:24,587 INFO : 76% Done
26 Jan 2024 16:44:24,632 INFO : 77% Done
26 Jan 2024 16:44:24,679 INFO : 78% Done
26 Jan 2024 16:44:24,731 INFO : 79% Done
26 Jan 2024 16:44:24,788 INFO : 80% Done
26 Jan 2024 16:44:24,835 INFO : 81% Done
26 Jan 2024 16:44:24,881 INFO : 82% Done
26 Jan 2024 16:44:24,929 INFO : 83% Done
26 Jan 2024 16:44:24,979 INFO : 84% Done
26 Jan 2024 16:44:25,034 INFO : 85% Done
26 Jan 2024 16:44:25,083 INFO : 86% Done
26 Jan 2024 16:44:25,132 INFO : 87% Done
26 Jan 2024 16:44:25,184 INFO : 88% Done
26 Jan 2024 16:44:25,238 INFO : 89% Done
26 Jan 2024 16:44:25,291 INFO : 90% Done
26 Jan 2024 16:44:25,343 INFO : 91% Done
26 Jan 2024 16:44:25,400 INFO : 92% Done
26 Jan 2024 16:44:25,454 INFO : 93% Done
26 Jan 2024 16:44:25,506 INFO : 94% Done
26 Jan 2024 16:44:25,555 INFO : 95% Done
26 Jan 2024 16:44:25,604 INFO : 96% Done
26 Jan 2024 16:44:25,654 INFO : 97% Done
26 Jan 2024 16:44:25,704 INFO : 98% Done
26 Jan 2024 16:44:25,704 DEBUG: Inserted 100 molecules
26 Jan 2024 16:44:25,742 DEBUG: Total molecules inserted: 100
26 Jan 2024 16:44:25,744 INFO : Done parsing Skyline document.
26 Jan 2024 16:44:45,477 INFO : Creating and populating temp tables for Proportion values
26 Jan 2024 16:44:45,660 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
26 Jan 2024 16:44:45,896 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
26 Jan 2024 16:44:46,061 INFO : Cleaning up temp tables
26 Jan 2024 16:44:46,335 INFO : Completed import of Skyline document from 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip
26 Jan 2024 16:44:46,338 INFO : 100% Done
26 Jan 2024 16:44:46,341 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%20FMT%20Bile%20Acid/@files/export/xar/experiments_and_runs.xar.exploded/Run189192/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip into the system
26 Jan 2024 16:44:46,347 INFO : Done importing xar
26 Jan 2024 16:44:46,348 INFO : Loading pages and webpart properties
26 Jan 2024 16:44:46,408 INFO : Done importing 3 page(s) with 5 webpart(s)
26 Jan 2024 16:44:46,408 INFO : Loading File Browser config
26 Jan 2024 16:44:46,408 INFO : Done importing File Browser config
26 Jan 2024 16:44:46,409 INFO : Starting Sample Status Data import
26 Jan 2024 16:44:46,409 INFO : No sample types XAR file to process.
26 Jan 2024 16:44:46,409 INFO : Finished importing Sample Status Data
26 Jan 2024 16:44:46,413 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
26 Jan 2024 16:44:46,415 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
26 Jan 2024 16:44:46,416 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
26 Jan 2024 16:44:46,416 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
26 Jan 2024 16:44:46,416 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
26 Jan 2024 16:44:46,417 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
26 Jan 2024 16:44:46,418 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
26 Jan 2024 16:44:46,424 INFO : Moving files to folder /Panorama Public/2024/UNC Baker Lab - FMT Bile Acid and creating symlinks
26 Jan 2024 16:44:46,425 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59
26 Jan 2024 16:44:46,459 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky.view to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky.view
26 Jan 2024 16:44:46,462 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky.view targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky.view
26 Jan 2024 16:44:46,464 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky
26 Jan 2024 16:44:46,465 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.sky
26 Jan 2024 16:44:46,467 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyl to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyl
26 Jan 2024 16:44:46,468 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyl targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyl
26 Jan 2024 16:44:46,470 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd
26 Jan 2024 16:44:46,471 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd
26 Jan 2024 16:44:46,474 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip
26 Jan 2024 16:44:46,475 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip
26 Jan 2024 16:44:46,477 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19
26 Jan 2024 16:44:46,478 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyl to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyl
26 Jan 2024 16:44:46,479 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyl targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyl
26 Jan 2024 16:44:46,481 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky
26 Jan 2024 16:44:46,482 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky
26 Jan 2024 16:44:46,483 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky.view to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky.view
26 Jan 2024 16:44:46,484 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky.view targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.sky.view
26 Jan 2024 16:44:46,485 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd
26 Jan 2024 16:44:46,487 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd
26 Jan 2024 16:44:46,488 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/RawFiles
26 Jan 2024 16:44:46,489 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip
26 Jan 2024 16:44:46,490 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip
26 Jan 2024 16:44:46,492 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/assaydata
26 Jan 2024 16:44:46,492 INFO : Aligning data files urls in folder: /Panorama Public/2024/UNC Baker Lab - FMT Bile Acid
26 Jan 2024 16:44:46,494 DEBUG: Setting filePathRoot on copied run: 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files
26 Jan 2024 16:44:46,496 DEBUG: Setting dataFileUri on copied data: 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip
26 Jan 2024 16:44:46,498 DEBUG: Setting dataFileUri on copied data: 20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59/20231220_Neg_FMT_BA_Full_reduce_Res50_High_final.skyd
26 Jan 2024 16:44:46,499 DEBUG: Setting filePathRoot on copied run: 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files
26 Jan 2024 16:44:46,501 DEBUG: Setting dataFileUri on copied data: 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip
26 Jan 2024 16:44:46,502 DEBUG: Setting dataFileUri on copied data: 20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19/20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final.skyd
26 Jan 2024 16:44:46,502 INFO : Importing files metadata.
26 Jan 2024 16:44:46,502 DEBUG: [/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid]  Reading files metadata from /data/labkey/files/Panorama Public/2024/UNC Baker Lab - FMT Bile Acid/@files/export
26 Jan 2024 16:44:46,503 INFO : 
26 Jan 2024 16:44:46,503 INFO : Experiment import completed successfully.
26 Jan 2024 16:44:46,504 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
26 Jan 2024 16:44:46,522 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
26 Jan 2024 16:44:46,522 INFO : 
26 Jan 2024 16:44:46,522 INFO : Checking for library folders.
26 Jan 2024 16:44:46,524 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
26 Jan 2024 16:44:46,539 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
26 Jan 2024 16:44:46,539 INFO : 
26 Jan 2024 16:44:46,539 INFO : Finishing up experiment copy.
26 Jan 2024 16:44:46,541 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/UNC Baker Lab - FMT Bile Acid
26 Jan 2024 16:44:46,541 INFO : Setting version on new experiment to 1
26 Jan 2024 16:44:46,543 INFO : Updating permanent link to point to the new copy of the data.
26 Jan 2024 16:44:46,567 INFO : Removing copy permissions given to Panorama Public
26 Jan 2024 16:44:46,573 INFO : Adding read permissions to all users that are folder admins in the source folder.
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to jndodds@unc.edu
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to rlberes@unc.edu
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to akstewar@ncsu.edu
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to mrfoster@ncsu.edu
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to guozhi@unc.edu
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to erinmsb@unc.edu
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to melanie.odenkirk@colostate.edu
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to kikirkwo@ncsu.edu
26 Jan 2024 16:44:46,574 INFO : Assigning ReaderRole to aboatman@unc.edu
26 Jan 2024 16:44:46,574 INFO : Assigning PanoramaPublicSubmitterRole to guozhi@unc.edu
26 Jan 2024 16:44:46,574 INFO : Assigning PanoramaPublicSubmitterRole to erinmsb@unc.edu
26 Jan 2024 16:44:46,585 INFO : Adding user guozhi@unc.edu to group Panorama Public Submitters
26 Jan 2024 16:44:46,588 INFO : User erinmsb@unc.edu is already a member of group Panorama Public Submitters
26 Jan 2024 16:44:46,588 INFO : Updating the 'Raw Data' tab configuration
26 Jan 2024 16:44:46,589 INFO : Creating a reviewer account.
26 Jan 2024 16:44:46,805 INFO : Created reviewer with email: User panorama+reviewer240@proteinms.net
26 Jan 2024 16:44:46,814 INFO : Adding user panorama+reviewer240@proteinms.net to group Reviewers
26 Jan 2024 16:44:46,816 INFO : Hiding the Data Pipeline tab.
26 Jan 2024 16:44:46,820 INFO : Updating Submission. Setting copiedExperimentId to 1767
26 Jan 2024 16:44:48,463 INFO : Assigning a DOI.
26 Jan 2024 16:44:49,910 INFO : Assigned DOI: 10.6069/mf5z-3s71
26 Jan 2024 16:44:50,027 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'