31 Dec 2024 11:25:01,627 INFO : Copying experiment "A histone PTM Skyline template with spectral library and iRT calculator" from folder /U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template to /Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template

31 Dec 2024 11:25:01,627 INFO : =======================================

31 Dec 2024 11:25:01,641 DEBUG: Resetting Job ID: 5dff7bf0-a9da-103d-b1ba-8d1d6db2ce32

31 Dec 2024 11:25:01,662 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

31 Dec 2024 11:25:01,662 INFO : 

31 Dec 2024 11:25:01,662 INFO : Exporting experiment.

31 Dec 2024 11:25:13,570 INFO : Exporting files metadata.

31 Dec 2024 11:25:13,570 DEBUG: [/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template]  Writing files metadata to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/export

31 Dec 2024 11:25:13,577 INFO : 

31 Dec 2024 11:25:13,577 INFO : Experiment export completed successfully.

31 Dec 2024 11:25:13,577 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

31 Dec 2024 11:25:13,597 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

31 Dec 2024 11:25:13,597 INFO : 

31 Dec 2024 11:25:13,597 INFO : Importing experiment.

31 Dec 2024 11:25:13,601 DEBUG: [/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template] Importing folder properties from: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/export

31 Dec 2024 11:25:13,602 INFO : Loading folder properties (folder type, settings and active modules)

31 Dec 2024 11:25:13,602 DEBUG: [/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template] Folder type: Targeted MS

31 Dec 2024 11:25:13,602 DEBUG: [/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template] Active modules: Issues, PanoramaPublic, Experiment, Query, FileContent, Search, Pipeline, Announcements, Protein, API, Core, Wiki, TargetedMS

31 Dec 2024 11:25:13,636 INFO : Done importing folder properties (folder type, settings and active modules)

31 Dec 2024 11:25:13,637 INFO : Loading container specific module properties

31 Dec 2024 11:25:13,644 INFO : Done importing container specific module properties

31 Dec 2024 11:25:13,645 INFO : Loading queries

31 Dec 2024 11:25:13,647 INFO : 1 query imported

31 Dec 2024 11:25:13,647 INFO : Done importing queries

31 Dec 2024 11:25:13,648 INFO : Loading etl definitions

31 Dec 2024 11:25:13,649 INFO : Loading wikis

31 Dec 2024 11:25:13,698 INFO : 1 wiki imported

31 Dec 2024 11:25:13,698 INFO : Done importing wikis

31 Dec 2024 11:25:13,788 INFO : Starting Data Class Importer

31 Dec 2024 11:25:13,788 INFO : No types XAR file to process.

31 Dec 2024 11:25:13,788 INFO : Finished Data Class Importer

31 Dec 2024 11:25:13,815 INFO : Starting to copy files to @files

31 Dec 2024 11:25:13,816 INFO : Copied 0 files to @files

31 Dec 2024 11:25:13,817 INFO : Starting to copy files to @assayfiles

31 Dec 2024 11:25:13,817 INFO : Copied 0 files to @assayfiles

31 Dec 2024 11:25:13,817 INFO : Ensuring exp.data rows exist for imported files

31 Dec 2024 11:25:13,872 INFO : Starting Sample Type Importer

31 Dec 2024 11:25:13,873 INFO : No types XAR file to process.

31 Dec 2024 11:25:13,873 INFO : Finished Sample Type Importer

31 Dec 2024 11:25:13,873 INFO : Loading xar

31 Dec 2024 11:25:17,353 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip.Core'

31 Dec 2024 11:25:17,355 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip.Output'

31 Dec 2024 11:25:17,356 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip'

31 Dec 2024 11:25:17,356 DEBUG: Protocol import complete

31 Dec 2024 11:25:17,357 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-14391:A+histone+PTM+Skyline+template+with+spectral+library+and+iRT+calculator'

31 Dec 2024 11:25:17,357 DEBUG: Experiment/Run group import complete

31 Dec 2024 11:25:17,363 DEBUG: Protocol action set import complete

31 Dec 2024 11:25:17,369 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip'

31 Dec 2024 11:25:17,373 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14391:d243017c-ac2c-103c-a2d1-fea6ddf55050'

31 Dec 2024 11:25:17,376 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14391:d2430776-ac2c-103c-a2d1-fea6ddf55050'

31 Dec 2024 11:25:17,376 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip.Core'

31 Dec 2024 11:25:17,378 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip.Output'

31 Dec 2024 11:25:17,378 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14391:d2430a20-ac2c-103c-a2d1-fea6ddf55050'

31 Dec 2024 11:25:17,381 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip'

31 Dec 2024 11:25:17,384 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14391:1faad42c-a9c5-103d-b1ba-8d1d6db2ce32'

31 Dec 2024 11:25:17,384 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip.Core'

31 Dec 2024 11:25:17,385 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14391:TargetedMS.ImportSkyZip.Output'

31 Dec 2024 11:25:17,385 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14391:1faad781-a9c5-103d-b1ba-8d1d6db2ce32'

31 Dec 2024 11:25:17,390 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Pennsylvania%20Epigenetics%20Institute%20-%20Histone%20PTM%20Skyline%20template/@files/export/xar/experiments_and_runs.xar.exploded/Run192052/histone_ptm_template.sky.zip into the system

31 Dec 2024 11:25:17,390 INFO : Starting import from histone_ptm_template.sky.zip

31 Dec 2024 11:25:17,392 INFO : Starting to import Skyline document from histone_ptm_template.sky.zip

31 Dec 2024 11:25:17,393 INFO : Expanding uniprot_human_sp_isoforms_2022-03-15_crap.protdb

31 Dec 2024 11:25:20,218 INFO : Expanding coenriched_histone_irt.irtdb

31 Dec 2024 11:25:20,218 INFO : Expanding prm_export_chrom_update.blib

31 Dec 2024 11:25:20,220 INFO : Expanding histone_ptm_template.skyd

31 Dec 2024 11:25:20,279 INFO : Expanding histone_ptm_template.sky.view

31 Dec 2024 11:25:20,280 INFO : Expanding histone_ptm_template.sky

31 Dec 2024 11:25:20,286 INFO : Reading Skyline file, histone_ptm_template.sky, to determine if the TransitionChromInfos in the document should be stored...

31 Dec 2024 11:25:20,294 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored

31 Dec 2024 11:25:20,297 INFO : 1% Done

31 Dec 2024 11:25:20,427 DEBUG: Starting to load chromatogram headers

31 Dec 2024 11:25:20,428 DEBUG: Done loading chromatogram headers

31 Dec 2024 11:25:20,590 INFO : Inserting H2A

31 Dec 2024 11:25:20,593 INFO : 2% Done

31 Dec 2024 11:25:20,622 INFO : 3% Done

31 Dec 2024 11:25:20,641 INFO : 4% Done

31 Dec 2024 11:25:20,675 DEBUG: Total peptides inserted: 4

31 Dec 2024 11:25:20,675 INFO : Inserting H3

31 Dec 2024 11:25:20,678 INFO : 5% Done

31 Dec 2024 11:25:20,701 INFO : 7% Done

31 Dec 2024 11:25:20,724 INFO : 8% Done

31 Dec 2024 11:25:20,748 INFO : 9% Done

31 Dec 2024 11:25:20,773 INFO : 10% Done

31 Dec 2024 11:25:20,800 INFO : 11% Done

31 Dec 2024 11:25:20,827 INFO : 12% Done

31 Dec 2024 11:25:20,862 INFO : 14% Done

31 Dec 2024 11:25:20,896 INFO : 15% Done

31 Dec 2024 11:25:20,930 INFO : 16% Done

31 Dec 2024 11:25:20,964 INFO : 18% Done

31 Dec 2024 11:25:20,998 INFO : 19% Done

31 Dec 2024 11:25:21,031 INFO : 21% Done

31 Dec 2024 11:25:21,065 INFO : 22% Done

31 Dec 2024 11:25:21,099 INFO : 24% Done

31 Dec 2024 11:25:21,133 INFO : 25% Done

31 Dec 2024 11:25:21,204 INFO : 27% Done

31 Dec 2024 11:25:21,241 INFO : 28% Done

31 Dec 2024 11:25:21,277 INFO : 30% Done

31 Dec 2024 11:25:21,312 INFO : 31% Done

31 Dec 2024 11:25:21,345 INFO : 33% Done

31 Dec 2024 11:25:21,377 INFO : 34% Done

31 Dec 2024 11:25:21,410 INFO : 36% Done

31 Dec 2024 11:25:21,443 INFO : 37% Done

31 Dec 2024 11:25:21,473 INFO : 38% Done

31 Dec 2024 11:25:21,494 INFO : 39% Done

31 Dec 2024 11:25:21,514 INFO : 40% Done

31 Dec 2024 11:25:21,534 INFO : 41% Done

31 Dec 2024 11:25:21,576 INFO : 42% Done

31 Dec 2024 11:25:21,596 INFO : 44% Done

31 Dec 2024 11:25:21,633 INFO : 45% Done

31 Dec 2024 11:25:21,654 INFO : 46% Done

31 Dec 2024 11:25:21,674 INFO : 47% Done

31 Dec 2024 11:25:21,696 INFO : 48% Done

31 Dec 2024 11:25:21,715 INFO : 49% Done

31 Dec 2024 11:25:21,736 INFO : 50% Done

31 Dec 2024 11:25:21,756 INFO : 51% Done

31 Dec 2024 11:25:21,777 INFO : 52% Done

31 Dec 2024 11:25:21,813 INFO : 53% Done

31 Dec 2024 11:25:21,828 INFO : 54% Done

31 Dec 2024 11:25:21,844 INFO : 55% Done

31 Dec 2024 11:25:21,873 DEBUG: Total peptides inserted: 46

31 Dec 2024 11:25:21,873 INFO : Inserting H4

31 Dec 2024 11:25:21,877 INFO : 57% Done

31 Dec 2024 11:25:21,905 INFO : 58% Done

31 Dec 2024 11:25:21,932 INFO : 59% Done

31 Dec 2024 11:25:21,961 INFO : 60% Done

31 Dec 2024 11:25:21,990 INFO : 62% Done

31 Dec 2024 11:25:22,019 INFO : 63% Done

31 Dec 2024 11:25:22,048 INFO : 64% Done

31 Dec 2024 11:25:22,077 INFO : 65% Done

31 Dec 2024 11:25:22,106 INFO : 67% Done

31 Dec 2024 11:25:22,136 INFO : 68% Done

31 Dec 2024 11:25:22,166 INFO : 69% Done

31 Dec 2024 11:25:22,196 INFO : 71% Done

31 Dec 2024 11:25:22,226 INFO : 72% Done

31 Dec 2024 11:25:22,255 INFO : 73% Done

31 Dec 2024 11:25:22,284 INFO : 74% Done

31 Dec 2024 11:25:22,314 INFO : 75% Done

31 Dec 2024 11:25:22,354 INFO : 76% Done

31 Dec 2024 11:25:22,367 INFO : 77% Done

31 Dec 2024 11:25:22,392 INFO : 78% Done

31 Dec 2024 11:25:22,409 DEBUG: Total peptides inserted: 21

31 Dec 2024 11:25:22,409 INFO : Inserting sp|P84243|H33_HUMAN

31 Dec 2024 11:25:22,416 INFO : 79% Done

31 Dec 2024 11:25:22,446 INFO : 81% Done

31 Dec 2024 11:25:22,478 INFO : 82% Done

31 Dec 2024 11:25:22,511 INFO : 84% Done

31 Dec 2024 11:25:22,540 DEBUG: Total peptides inserted: 4

31 Dec 2024 11:25:22,540 INFO : Inserting sp|P16104|H2AX_HUMAN

31 Dec 2024 11:25:22,544 INFO : 85% Done

31 Dec 2024 11:25:22,562 DEBUG: Total peptides inserted: 1

31 Dec 2024 11:25:22,562 INFO : Inserting sp|P0C0S5|H2AZ_HUMAN

31 Dec 2024 11:25:22,569 INFO : 86% Done

31 Dec 2024 11:25:22,593 INFO : 87% Done

31 Dec 2024 11:25:22,632 INFO : 88% Done

31 Dec 2024 11:25:22,654 INFO : 89% Done

31 Dec 2024 11:25:22,674 INFO : 90% Done

31 Dec 2024 11:25:22,694 INFO : 91% Done

31 Dec 2024 11:25:22,717 INFO : 92% Done

31 Dec 2024 11:25:22,737 DEBUG: Total peptides inserted: 8

31 Dec 2024 11:25:22,737 INFO : Inserting SP|O75367|H2AY_HUMAN

31 Dec 2024 11:25:22,740 INFO : 93% Done

31 Dec 2024 11:25:22,763 DEBUG: Total peptides inserted: 1

31 Dec 2024 11:25:22,763 INFO : Inserting Co-enriched iRT peptides

31 Dec 2024 11:25:22,765 INFO : 94% Done

31 Dec 2024 11:25:22,785 INFO : 95% Done

31 Dec 2024 11:25:22,804 INFO : 96% Done

31 Dec 2024 11:25:22,818 INFO : 97% Done

31 Dec 2024 11:25:22,844 INFO : 98% Done

31 Dec 2024 11:25:22,858 DEBUG: Total peptides inserted: 13

31 Dec 2024 11:25:22,858 INFO : Done parsing Skyline document.

31 Dec 2024 11:25:22,858 INFO : Calculating iRT correlations for 1 sample(s)

31 Dec 2024 11:25:22,859 INFO : Calculated iRT regression line from full standard list.

31 Dec 2024 11:25:22,859 INFO : Finished calculating iRT correlations for all samples. 1 had a regression line calculated.

31 Dec 2024 11:25:22,860 INFO : Creating and populating temp tables for Proportion values

31 Dec 2024 11:25:22,866 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

31 Dec 2024 11:25:22,884 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

31 Dec 2024 11:25:22,896 INFO : Cleaning up temp tables

31 Dec 2024 11:25:22,896 INFO : Completed import of Skyline document from histone_ptm_template.sky.zip

31 Dec 2024 11:25:22,925 INFO : 100% Done

31 Dec 2024 11:25:22,929 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Pennsylvania%20Epigenetics%20Institute%20-%20Histone%20PTM%20Skyline%20template/@files/export/xar/experiments_and_runs.xar.exploded/Run192052/histone_ptm_template.sky.zip into the system

31 Dec 2024 11:25:22,929 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Pennsylvania%20Epigenetics%20Institute%20-%20Histone%20PTM%20Skyline%20template/@files/export/xar/experiments_and_runs.xar.exploded/Run192052/histone_ptm_template/histone_ptm_template.skyd into the system

31 Dec 2024 11:25:22,929 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Pennsylvania%20Epigenetics%20Institute%20-%20Histone%20PTM%20Skyline%20template/@files/export/xar/experiments_and_runs.xar.exploded/Run192052/histone_ptm_template/histone_ptm_template.skyd into the system

31 Dec 2024 11:25:22,929 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Pennsylvania%20Epigenetics%20Institute%20-%20Histone%20PTM%20Skyline%20template/@files/export/xar/experiments_and_runs.xar.exploded/Run240766/histone_ptm_empty_template.sky.zip into the system

31 Dec 2024 11:25:22,930 INFO : Starting import from histone_ptm_empty_template.sky.zip

31 Dec 2024 11:25:22,931 INFO : Starting to import Skyline document from histone_ptm_empty_template.sky.zip

31 Dec 2024 11:25:22,939 INFO : Expanding uniprot_human_sp_isoforms_2022-03-15_crap.protdb

31 Dec 2024 11:25:25,991 INFO : Expanding coenriched_histone_irt.irtdb

31 Dec 2024 11:25:25,992 INFO : Expanding prm_export_chrom_update.blib

31 Dec 2024 11:25:25,993 INFO : Expanding histone_ptm_empty_template.sky.view

31 Dec 2024 11:25:25,994 INFO : Expanding histone_ptm_empty_template.sky

31 Dec 2024 11:25:25,997 INFO : Reading Skyline file, histone_ptm_empty_template.sky, to determine if the TransitionChromInfos in the document should be stored...

31 Dec 2024 11:25:26,002 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored

31 Dec 2024 11:25:26,002 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1

31 Dec 2024 11:25:26,004 INFO : 2% Done

31 Dec 2024 11:25:26,005 WARN : Unable to find file /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/export/xar/experiments_and_runs.xar.exploded/Run240766/histone_ptm_empty_template/histone_ptm_empty_template.skyd, unable to import chromatograms

31 Dec 2024 11:25:26,135 INFO : Inserting H2A

31 Dec 2024 11:25:26,152 INFO : 3% Done

31 Dec 2024 11:25:26,167 INFO : 4% Done

31 Dec 2024 11:25:26,183 INFO : 5% Done

31 Dec 2024 11:25:26,199 DEBUG: Total peptides inserted: 4

31 Dec 2024 11:25:26,199 INFO : Inserting H3

31 Dec 2024 11:25:26,200 INFO : 6% Done

31 Dec 2024 11:25:26,218 INFO : 7% Done

31 Dec 2024 11:25:26,236 INFO : 8% Done

31 Dec 2024 11:25:26,255 INFO : 9% Done

31 Dec 2024 11:25:26,275 INFO : 10% Done

31 Dec 2024 11:25:26,294 INFO : 11% Done

31 Dec 2024 11:25:26,313 INFO : 13% Done

31 Dec 2024 11:25:26,337 INFO : 14% Done

31 Dec 2024 11:25:26,361 INFO : 15% Done

31 Dec 2024 11:25:26,387 INFO : 17% Done

31 Dec 2024 11:25:26,409 INFO : 18% Done

31 Dec 2024 11:25:26,432 INFO : 19% Done

31 Dec 2024 11:25:26,455 INFO : 21% Done

31 Dec 2024 11:25:26,478 INFO : 22% Done

31 Dec 2024 11:25:26,500 INFO : 24% Done

31 Dec 2024 11:25:26,523 INFO : 25% Done

31 Dec 2024 11:25:26,568 INFO : 27% Done

31 Dec 2024 11:25:26,591 INFO : 28% Done

31 Dec 2024 11:25:26,615 INFO : 29% Done

31 Dec 2024 11:25:26,639 INFO : 31% Done

31 Dec 2024 11:25:26,663 INFO : 32% Done

31 Dec 2024 11:25:26,687 INFO : 34% Done

31 Dec 2024 11:25:26,711 INFO : 35% Done

31 Dec 2024 11:25:26,734 INFO : 37% Done

31 Dec 2024 11:25:26,757 INFO : 38% Done

31 Dec 2024 11:25:26,788 INFO : 39% Done

31 Dec 2024 11:25:26,804 INFO : 40% Done

31 Dec 2024 11:25:26,820 INFO : 41% Done

31 Dec 2024 11:25:26,836 INFO : 42% Done

31 Dec 2024 11:25:26,852 INFO : 43% Done

31 Dec 2024 11:25:26,868 INFO : 44% Done

31 Dec 2024 11:25:26,884 INFO : 45% Done

31 Dec 2024 11:25:26,899 INFO : 46% Done

31 Dec 2024 11:25:26,930 INFO : 48% Done

31 Dec 2024 11:25:26,946 INFO : 49% Done

31 Dec 2024 11:25:26,977 INFO : 50% Done

31 Dec 2024 11:25:26,993 INFO : 51% Done

31 Dec 2024 11:25:27,009 INFO : 52% Done

31 Dec 2024 11:25:27,021 INFO : 53% Done

31 Dec 2024 11:25:27,033 INFO : 54% Done

31 Dec 2024 11:25:27,055 INFO : 55% Done

31 Dec 2024 11:25:27,066 DEBUG: Total peptides inserted: 46

31 Dec 2024 11:25:27,066 INFO : Inserting H4

31 Dec 2024 11:25:27,067 INFO : 56% Done

31 Dec 2024 11:25:27,091 INFO : 57% Done

31 Dec 2024 11:25:27,117 INFO : 59% Done

31 Dec 2024 11:25:27,141 INFO : 60% Done

31 Dec 2024 11:25:27,166 INFO : 61% Done

31 Dec 2024 11:25:27,190 INFO : 63% Done

31 Dec 2024 11:25:27,215 INFO : 64% Done

31 Dec 2024 11:25:27,241 INFO : 66% Done

31 Dec 2024 11:25:27,266 INFO : 67% Done

31 Dec 2024 11:25:27,290 INFO : 69% Done

31 Dec 2024 11:25:27,313 INFO : 70% Done

31 Dec 2024 11:25:27,337 INFO : 71% Done

31 Dec 2024 11:25:27,361 INFO : 72% Done

31 Dec 2024 11:25:27,385 INFO : 74% Done

31 Dec 2024 11:25:27,433 INFO : 75% Done

31 Dec 2024 11:25:27,456 INFO : 76% Done

31 Dec 2024 11:25:27,465 INFO : 77% Done

31 Dec 2024 11:25:27,483 INFO : 78% Done

31 Dec 2024 11:25:27,492 INFO : 79% Done

31 Dec 2024 11:25:27,506 DEBUG: Total peptides inserted: 21

31 Dec 2024 11:25:27,506 INFO : Inserting sp|P84243|H33_HUMAN

31 Dec 2024 11:25:27,509 INFO : 80% Done

31 Dec 2024 11:25:27,533 INFO : 81% Done

31 Dec 2024 11:25:27,557 INFO : 82% Done

31 Dec 2024 11:25:27,581 INFO : 84% Done

31 Dec 2024 11:25:27,604 DEBUG: Total peptides inserted: 4

31 Dec 2024 11:25:27,604 INFO : Inserting sp|P16104|H2AX_HUMAN

31 Dec 2024 11:25:27,606 INFO : 85% Done

31 Dec 2024 11:25:27,621 DEBUG: Total peptides inserted: 1

31 Dec 2024 11:25:27,621 INFO : Inserting sp|P0C0S5|H2AZ_HUMAN

31 Dec 2024 11:25:27,624 INFO : 86% Done

31 Dec 2024 11:25:27,640 INFO : 87% Done

31 Dec 2024 11:25:27,657 INFO : 88% Done

31 Dec 2024 11:25:27,673 INFO : 89% Done

31 Dec 2024 11:25:27,689 INFO : 90% Done

31 Dec 2024 11:25:27,706 INFO : 91% Done

31 Dec 2024 11:25:27,722 INFO : 92% Done

31 Dec 2024 11:25:27,738 INFO : 93% Done

31 Dec 2024 11:25:27,754 DEBUG: Total peptides inserted: 8

31 Dec 2024 11:25:27,754 INFO : Inserting SP|O75367|H2AY_HUMAN

31 Dec 2024 11:25:27,755 INFO : 94% Done

31 Dec 2024 11:25:27,776 DEBUG: Total peptides inserted: 1

31 Dec 2024 11:25:27,776 INFO : Inserting Co-enriched iRT peptides

31 Dec 2024 11:25:27,777 INFO : 95% Done

31 Dec 2024 11:25:27,794 INFO : 96% Done

31 Dec 2024 11:25:27,807 INFO : 97% Done

31 Dec 2024 11:25:27,826 INFO : 98% Done

31 Dec 2024 11:25:27,839 DEBUG: Total peptides inserted: 13

31 Dec 2024 11:25:27,839 INFO : Done parsing Skyline document.

31 Dec 2024 11:25:27,839 INFO : Calculating iRT correlations for 0 sample(s)

31 Dec 2024 11:25:27,839 INFO : Finished calculating iRT correlations for all samples. 0 had a regression line calculated.

31 Dec 2024 11:25:27,840 INFO : Creating and populating temp tables for Proportion values

31 Dec 2024 11:25:27,845 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

31 Dec 2024 11:25:27,846 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

31 Dec 2024 11:25:27,846 INFO : Cleaning up temp tables

31 Dec 2024 11:25:27,847 INFO : Completed import of Skyline document from histone_ptm_empty_template.sky.zip

31 Dec 2024 11:25:27,848 INFO : 100% Done

31 Dec 2024 11:25:27,851 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Pennsylvania%20Epigenetics%20Institute%20-%20Histone%20PTM%20Skyline%20template/@files/export/xar/experiments_and_runs.xar.exploded/Run240766/histone_ptm_empty_template.sky.zip into the system

31 Dec 2024 11:25:28,224 INFO : Done importing xar

31 Dec 2024 11:25:28,226 INFO : Loading pages and webpart properties

31 Dec 2024 11:25:28,272 INFO : Done importing 3 page(s) with 5 webpart(s)

31 Dec 2024 11:25:28,272 INFO : Loading File Browser config

31 Dec 2024 11:25:28,272 INFO : Done importing File Browser config

31 Dec 2024 11:25:28,273 INFO : Starting Sample Status Data import

31 Dec 2024 11:25:28,273 INFO : No sample types XAR file to process.

31 Dec 2024 11:25:28,273 INFO : Finished importing Sample Status Data

31 Dec 2024 11:25:28,277 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

31 Dec 2024 11:25:28,279 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping

31 Dec 2024 11:25:28,279 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping

31 Dec 2024 11:25:28,279 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping

31 Dec 2024 11:25:28,280 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping

31 Dec 2024 11:25:28,280 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

31 Dec 2024 11:25:28,281 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

31 Dec 2024 11:25:28,295 INFO : Moving files to folder /Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template and creating symlinks

31 Dec 2024 11:25:28,295 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template

31 Dec 2024 11:25:28,296 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/coenriched_histone_irt.irtdb to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/coenriched_histone_irt.irtdb

31 Dec 2024 11:25:28,298 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/coenriched_histone_irt.irtdb targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/coenriched_histone_irt.irtdb

31 Dec 2024 11:25:28,299 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/prm_export_chrom_update.blib to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/prm_export_chrom_update.blib

31 Dec 2024 11:25:28,300 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/prm_export_chrom_update.blib targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/prm_export_chrom_update.blib

31 Dec 2024 11:25:28,301 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/uniprot_human_sp_isoforms_2022-03-15_crap.protdb to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/uniprot_human_sp_isoforms_2022-03-15_crap.protdb

31 Dec 2024 11:25:28,302 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/uniprot_human_sp_isoforms_2022-03-15_crap.protdb targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/uniprot_human_sp_isoforms_2022-03-15_crap.protdb

31 Dec 2024 11:25:28,303 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.skyd to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.skyd

31 Dec 2024 11:25:28,304 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.skyd targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.skyd

31 Dec 2024 11:25:28,304 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.sky to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.sky

31 Dec 2024 11:25:28,305 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.sky targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.sky

31 Dec 2024 11:25:28,306 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.sky.view to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.sky.view

31 Dec 2024 11:25:28,307 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.sky.view targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.sky.view

31 Dec 2024 11:25:28,308 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template

31 Dec 2024 11:25:28,309 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/coenriched_histone_irt.irtdb to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/coenriched_histone_irt.irtdb

31 Dec 2024 11:25:28,310 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/coenriched_histone_irt.irtdb targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/coenriched_histone_irt.irtdb

31 Dec 2024 11:25:28,311 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/prm_export_chrom_update.blib to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/prm_export_chrom_update.blib

31 Dec 2024 11:25:28,311 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/prm_export_chrom_update.blib targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/prm_export_chrom_update.blib

31 Dec 2024 11:25:28,312 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/histone_ptm_empty_template.sky.view to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/histone_ptm_empty_template.sky.view

31 Dec 2024 11:25:28,312 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/histone_ptm_empty_template.sky.view targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/histone_ptm_empty_template.sky.view

31 Dec 2024 11:25:28,313 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/uniprot_human_sp_isoforms_2022-03-15_crap.protdb to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/uniprot_human_sp_isoforms_2022-03-15_crap.protdb

31 Dec 2024 11:25:28,314 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/uniprot_human_sp_isoforms_2022-03-15_crap.protdb targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/uniprot_human_sp_isoforms_2022-03-15_crap.protdb

31 Dec 2024 11:25:28,315 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/histone_ptm_empty_template.sky to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/histone_ptm_empty_template.sky

31 Dec 2024 11:25:28,315 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template/histone_ptm_empty_template.sky targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template/histone_ptm_empty_template.sky

31 Dec 2024 11:25:28,316 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles

31 Dec 2024 11:25:28,317 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_008.raw to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_008.raw

31 Dec 2024 11:25:28,317 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_008.raw targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_008.raw

31 Dec 2024 11:25:28,318 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dia_009.raw to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dia_009.raw

31 Dec 2024 11:25:28,319 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dia_009.raw targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dia_009.raw

31 Dec 2024 11:25:28,320 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_006.raw to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_006.raw

31 Dec 2024 11:25:28,320 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_006.raw targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_006.raw

31 Dec 2024 11:25:28,321 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_prm_010.raw to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_prm_010.raw

31 Dec 2024 11:25:28,322 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_prm_010.raw targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_prm_010.raw

31 Dec 2024 11:25:28,322 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/histone_garcia_v0-9-3_prm.sky.zip to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/histone_garcia_v0-9-3_prm.sky.zip

31 Dec 2024 11:25:28,323 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/histone_garcia_v0-9-3_prm.sky.zip targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/histone_garcia_v0-9-3_prm.sky.zip

31 Dec 2024 11:25:28,324 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_007.raw to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_007.raw

31 Dec 2024 11:25:28,325 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_007.raw targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/RawFiles/20200710_QEHF_lkp_histone-speclib_dda_007.raw

31 Dec 2024 11:25:28,326 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template.sky.zip to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template.sky.zip

31 Dec 2024 11:25:28,326 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_template.sky.zip targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template.sky.zip

31 Dec 2024 11:25:28,327 DEBUG: Moved file /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template.sky.zip to /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template.sky.zip

31 Dec 2024 11:25:28,328 DEBUG: Created symlink /data/labkey/files/U of Pennsylvania - Epigenetics Institute/Histone PTM Skyline template/@files/histone_ptm_empty_template.sky.zip targeting /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template.sky.zip

31 Dec 2024 11:25:28,329 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/assaydata

31 Dec 2024 11:25:28,329 INFO : Aligning data files urls in folder: /Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template

31 Dec 2024 11:25:28,331 DEBUG: Setting filePathRoot on copied run: histone_ptm_template.sky.zip to: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files

31 Dec 2024 11:25:28,333 DEBUG: Setting dataFileUri on copied data: histone_ptm_template.sky.zip to: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template.sky.zip

31 Dec 2024 11:25:28,334 DEBUG: Setting dataFileUri on copied data: histone_ptm_template.skyd to: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_template/histone_ptm_template.skyd

31 Dec 2024 11:25:28,335 DEBUG: Setting filePathRoot on copied run: histone_ptm_empty_template.sky.zip to: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files

31 Dec 2024 11:25:28,337 DEBUG: Setting dataFileUri on copied data: histone_ptm_empty_template.sky.zip to: /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/histone_ptm_empty_template.sky.zip

31 Dec 2024 11:25:28,337 INFO : Importing files metadata.

31 Dec 2024 11:25:28,337 DEBUG: [/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template]  Reading files metadata from /data/labkey/files/Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template/@files/export

31 Dec 2024 11:25:28,338 INFO : 

31 Dec 2024 11:25:28,338 INFO : Experiment import completed successfully.

31 Dec 2024 11:25:28,338 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

31 Dec 2024 11:25:28,355 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'

31 Dec 2024 11:25:28,355 INFO : 

31 Dec 2024 11:25:28,355 INFO : Checking for library folders.

31 Dec 2024 11:25:28,356 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'

31 Dec 2024 11:25:28,369 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

31 Dec 2024 11:25:28,370 INFO : 

31 Dec 2024 11:25:28,370 INFO : Finishing up experiment copy.

31 Dec 2024 11:25:28,371 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/U of Pennsylvania Epigenetics Institute - Histone PTM Skyline template

31 Dec 2024 11:25:28,371 INFO : Setting version on new experiment to 1

31 Dec 2024 11:25:28,373 INFO : Updating permanent link to point to the new copy of the data.

31 Dec 2024 11:25:28,390 INFO : Removing copy permissions given to Panorama Public

31 Dec 2024 11:25:28,392 INFO : Adding read permissions to all users that are folder admins in the source folder.

31 Dec 2024 11:25:28,393 INFO : Assigning ReaderRole to baezaj83@gmail.com

31 Dec 2024 11:25:28,393 INFO : Assigning ReaderRole to lindsay.pino@gmail.com

31 Dec 2024 11:25:28,393 INFO : Assigning ReaderRole to richard.lauman@gmail.com

31 Dec 2024 11:25:28,393 INFO : Assigning ReaderRole to lindsay.pino@pennmedicine.upenn.edu

31 Dec 2024 11:25:28,393 INFO : Assigning PanoramaPublicSubmitterRole to baezaj83@gmail.com

31 Dec 2024 11:25:28,393 INFO : Assigning PanoramaPublicSubmitterRole to lindsay.pino@gmail.com

31 Dec 2024 11:25:28,400 INFO : Adding user baezaj83@gmail.com to group Panorama Public Submitters

31 Dec 2024 11:25:28,403 INFO : User lindsay.pino@gmail.com is already a member of group Panorama Public Submitters

31 Dec 2024 11:25:28,403 INFO : Updating the 'Raw Data' tab configuration

31 Dec 2024 11:25:28,403 INFO : Making folder public.

31 Dec 2024 11:25:28,405 INFO : Hiding the Data Pipeline tab.

31 Dec 2024 11:25:28,408 INFO : Updating Submission. Setting copiedExperimentId to 1970

31 Dec 2024 11:25:29,972 INFO : Assigning a DOI.

31 Dec 2024 11:25:31,664 INFO : Assigned DOI: 10.6069/718m-a040

31 Dec 2024 11:25:31,694 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'