Copying experiment: Analysis of N-Glycosylation for SARS-CoV-2 expressed receptor-binding domain VOCs and membrane protein with LC-MS.

U of Leipzig AG Bioanalytics - RBD_M_Glyco

Job Status

Created: 2024-01-26 17:22:01
Modified: 2024-01-26 17:24:26
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Analysis of N-Glycosylation for SARS-CoV-2 expressed receptor-binding domain VOCs and membrane protein with LC-MS.
File Path: /data/labkey/files/Panorama Public/2024/U of Leipzig AG Bioanalytics - RBD_M_Glyco/@files/Experiment_1775.log
Files: Experiment_1775.log
Completed Runs: RBD_M_Glyco_2024-01-25_15-29-41.sky.zip

Log File


26 Jan 2024 17:22:01,159 INFO : Copying experiment "Analysis of N-Glycosylation for SARS-CoV-2 expressed receptor-binding domain VOCs and membrane protein with LC-MS." from folder /U of Leipzig - AG Bioanalytics/RBD_M_Glyco to /Panorama Public/2024/U of Leipzig AG Bioanalytics - RBD_M_Glyco
26 Jan 2024 17:22:01,160 INFO : =======================================
26 Jan 2024 17:22:01,201 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
26 Jan 2024 17:22:01,201 INFO :
26 Jan 2024 17:22:01,201 INFO : Exporting experiment.
26 Jan 2024 17:22:53,865 INFO : Exporting files metadata.
26 Jan 2024 17:22:53,890 INFO :
26 Jan 2024 17:22:53,890 INFO : Experiment export completed successfully.
26 Jan 2024 17:22:53,890 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
26 Jan 2024 17:22:53,917 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
26 Jan 2024 17:22:53,917 INFO :
26 Jan 2024 17:22:53,917 INFO : Importing experiment.
26 Jan 2024 17:22:53,919 INFO : Loading folder properties (folder type, settings and active modules)
26 Jan 2024 17:22:53,990 INFO : Done importing folder properties (folder type, settings and active modules)
26 Jan 2024 17:22:53,992 INFO : Loading container specific module properties
26 Jan 2024 17:22:53,995 INFO : Done importing container specific module properties
26 Jan 2024 17:22:53,997 INFO : Loading grid views
26 Jan 2024 17:22:54,044 INFO : 1 custom view imported
26 Jan 2024 17:22:54,044 INFO : Done importing grid views
26 Jan 2024 17:22:54,045 INFO : Loading etl definitions
26 Jan 2024 17:22:54,046 INFO : Loading wikis
26 Jan 2024 17:22:54,052 INFO : 1 wiki imported
26 Jan 2024 17:22:54,052 INFO : Done importing wikis
26 Jan 2024 17:22:54,529 INFO : Starting Data Class Importer
26 Jan 2024 17:22:54,530 INFO : No types XAR file to process.
26 Jan 2024 17:22:54,530 INFO : Finished Data Class Importer
26 Jan 2024 17:22:56,023 INFO : Starting to copy files
26 Jan 2024 17:22:56,023 INFO : Copied 0 files
26 Jan 2024 17:22:56,023 INFO : Ensuring exp.data rows exist for imported files
26 Jan 2024 17:22:56,861 INFO : Starting Sample Type Importer
26 Jan 2024 17:22:56,861 INFO : No types XAR file to process.
26 Jan 2024 17:22:56,861 INFO : Finished Sample Type Importer
26 Jan 2024 17:22:56,863 INFO : Loading xar
26 Jan 2024 17:23:26,652 INFO : Starting import from RBD_M_Glyco_2024-01-25_15-29-41.sky.zip
26 Jan 2024 17:23:26,655 INFO : Starting to import Skyline document from RBD_M_Glyco_2024-01-25_15-29-41.sky.zip
26 Jan 2024 17:23:28,485 INFO : Expanding Uniprot_Human_20594seq_RBD_181223.protdb
26 Jan 2024 17:23:53,288 INFO : Expanding RBD_M_HD_DDA.blib
26 Jan 2024 17:23:54,997 INFO : Expanding RBD_M_HD_DDA.redundant.blib
26 Jan 2024 17:23:55,067 INFO : Expanding RBD_M_Glyco.skyd
26 Jan 2024 17:23:55,274 INFO : Expanding RBD_M_Glyco.sky.view
26 Jan 2024 17:23:57,346 INFO : Expanding RBD_M_Glyco.sky
26 Jan 2024 17:23:58,047 INFO : Expanding RBD_M_Glyco.skyl
26 Jan 2024 17:24:00,572 INFO : 1% Done
26 Jan 2024 17:24:01,079 INFO : Inserting rh|MHISII|Expressed
26 Jan 2024 17:24:01,110 INFO : 2% Done
26 Jan 2024 17:24:01,162 INFO : 3% Done
26 Jan 2024 17:24:01,205 INFO : Inserting rh|RBDa|Expressed
26 Jan 2024 17:24:01,210 INFO : 4% Done
26 Jan 2024 17:24:01,253 INFO : 5% Done
26 Jan 2024 17:24:01,291 INFO : 6% Done
26 Jan 2024 17:24:01,337 INFO : 7% Done
26 Jan 2024 17:24:01,373 INFO : 8% Done
26 Jan 2024 17:24:01,425 INFO : 9% Done
26 Jan 2024 17:24:01,468 INFO : 10% Done
26 Jan 2024 17:24:01,513 INFO : 11% Done
26 Jan 2024 17:24:01,544 INFO : 12% Done
26 Jan 2024 17:24:01,592 INFO : 13% Done
26 Jan 2024 17:24:01,641 INFO : 14% Done
26 Jan 2024 17:24:01,683 INFO : 15% Done
26 Jan 2024 17:24:01,729 INFO : 16% Done
26 Jan 2024 17:24:01,761 INFO : 17% Done
26 Jan 2024 17:24:01,815 INFO : 18% Done
26 Jan 2024 17:24:01,859 INFO : 19% Done
26 Jan 2024 17:24:01,868 INFO : Inserting rh|RBDb|Expressed
26 Jan 2024 17:24:01,904 INFO : 20% Done
26 Jan 2024 17:24:01,946 INFO : 21% Done
26 Jan 2024 17:24:01,975 INFO : 22% Done
26 Jan 2024 17:24:02,030 INFO : 23% Done
26 Jan 2024 17:24:02,070 INFO : 24% Done
26 Jan 2024 17:24:02,101 INFO : 25% Done
26 Jan 2024 17:24:02,186 INFO : 26% Done
26 Jan 2024 17:24:02,222 INFO : 27% Done
26 Jan 2024 17:24:02,261 INFO : 28% Done
26 Jan 2024 17:24:02,300 INFO : 29% Done
26 Jan 2024 17:24:02,341 INFO : 30% Done
26 Jan 2024 17:24:02,373 INFO : 31% Done
26 Jan 2024 17:24:02,424 INFO : 32% Done
26 Jan 2024 17:24:02,458 INFO : 33% Done
26 Jan 2024 17:24:02,507 INFO : 34% Done
26 Jan 2024 17:24:02,525 INFO : Inserting rh|RBDbaI|Expressed
26 Jan 2024 17:24:02,550 INFO : 35% Done
26 Jan 2024 17:24:02,589 INFO : 36% Done
26 Jan 2024 17:24:02,623 INFO : 37% Done
26 Jan 2024 17:24:02,663 INFO : 38% Done
26 Jan 2024 17:24:02,693 INFO : 39% Done
26 Jan 2024 17:24:02,738 INFO : 40% Done
26 Jan 2024 17:24:02,784 INFO : 41% Done
26 Jan 2024 17:24:02,815 INFO : 42% Done
26 Jan 2024 17:24:02,865 INFO : 43% Done
26 Jan 2024 17:24:02,894 INFO : Inserting rh|RBDg|Expressed
26 Jan 2024 17:24:02,911 INFO : 44% Done
26 Jan 2024 17:24:02,951 INFO : 45% Done
26 Jan 2024 17:24:02,980 INFO : 46% Done
26 Jan 2024 17:24:03,027 INFO : 47% Done
26 Jan 2024 17:24:03,067 INFO : 48% Done
26 Jan 2024 17:24:03,108 INFO : 49% Done
26 Jan 2024 17:24:03,139 INFO : 50% Done
26 Jan 2024 17:24:03,186 INFO : 51% Done
26 Jan 2024 17:24:03,226 INFO : 52% Done
26 Jan 2024 17:24:03,255 INFO : 53% Done
26 Jan 2024 17:24:03,309 INFO : 54% Done
26 Jan 2024 17:24:03,339 INFO : 55% Done
26 Jan 2024 17:24:03,387 INFO : 56% Done
26 Jan 2024 17:24:03,418 INFO : 57% Done
26 Jan 2024 17:24:03,458 INFO : 58% Done
26 Jan 2024 17:24:03,499 INFO : 59% Done
26 Jan 2024 17:24:03,546 INFO : Inserting rh|RBDk|Expressed
26 Jan 2024 17:24:03,550 INFO : 60% Done
26 Jan 2024 17:24:03,590 INFO : 61% Done
26 Jan 2024 17:24:08,983 INFO : 62% Done
26 Jan 2024 17:24:09,028 INFO : 63% Done
26 Jan 2024 17:24:09,082 INFO : 64% Done
26 Jan 2024 17:24:09,136 INFO : 65% Done
26 Jan 2024 17:24:09,189 INFO : 66% Done
26 Jan 2024 17:24:09,234 INFO : 67% Done
26 Jan 2024 17:24:09,277 INFO : 68% Done
26 Jan 2024 17:24:09,321 INFO : 69% Done
26 Jan 2024 17:24:09,366 INFO : 70% Done
26 Jan 2024 17:24:09,420 INFO : 71% Done
26 Jan 2024 17:24:09,448 INFO : 72% Done
26 Jan 2024 17:24:09,501 INFO : 73% Done
26 Jan 2024 17:24:09,555 INFO : 74% Done
26 Jan 2024 17:24:09,654 INFO : 75% Done
26 Jan 2024 17:24:09,698 INFO : 76% Done
26 Jan 2024 17:24:09,742 INFO : 77% Done
26 Jan 2024 17:24:09,786 INFO : 78% Done
26 Jan 2024 17:24:09,831 INFO : 79% Done
26 Jan 2024 17:24:09,866 INFO : 80% Done
26 Jan 2024 17:24:09,919 INFO : 81% Done
26 Jan 2024 17:24:09,937 INFO : Inserting rh|RBDWT|Expressed
26 Jan 2024 17:24:09,963 INFO : 82% Done
26 Jan 2024 17:24:10,018 INFO : 83% Done
26 Jan 2024 17:24:10,059 INFO : 84% Done
26 Jan 2024 17:24:10,107 INFO : 85% Done
26 Jan 2024 17:24:10,149 INFO : 86% Done
26 Jan 2024 17:24:10,190 INFO : 87% Done
26 Jan 2024 17:24:10,222 INFO : 88% Done
26 Jan 2024 17:24:10,272 INFO : 89% Done
26 Jan 2024 17:24:10,302 INFO : 90% Done
26 Jan 2024 17:24:10,356 INFO : 91% Done
26 Jan 2024 17:24:10,399 INFO : 92% Done
26 Jan 2024 17:24:10,437 INFO : 93% Done
26 Jan 2024 17:24:10,479 INFO : 94% Done
26 Jan 2024 17:24:10,513 INFO : 95% Done
26 Jan 2024 17:24:10,559 INFO : 96% Done
26 Jan 2024 17:24:10,608 INFO : 97% Done
26 Jan 2024 17:24:10,651 INFO : 98% Done
26 Jan 2024 17:24:10,684 INFO : Done parsing Skyline document.
26 Jan 2024 17:24:10,836 INFO : Creating and populating temp tables for Proportion values
26 Jan 2024 17:24:11,013 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
26 Jan 2024 17:24:11,152 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
26 Jan 2024 17:24:11,222 INFO : Cleaning up temp tables
26 Jan 2024 17:24:11,517 INFO : Completed import of Skyline document from RBD_M_Glyco_2024-01-25_15-29-41.sky.zip
26 Jan 2024 17:24:11,519 INFO : 100% Done
26 Jan 2024 17:24:11,528 INFO : Done importing xar
26 Jan 2024 17:24:11,529 INFO : Loading pages and webpart properties
26 Jan 2024 17:24:11,588 INFO : Done importing 3 page(s) with 5 webpart(s)
26 Jan 2024 17:24:11,589 INFO : Loading File Browser config
26 Jan 2024 17:24:11,589 INFO : Done importing File Browser config
26 Jan 2024 17:24:11,590 INFO : Starting Sample Status Data import
26 Jan 2024 17:24:11,590 INFO : No sample types XAR file to process.
26 Jan 2024 17:24:11,590 INFO : Finished importing Sample Status Data
26 Jan 2024 17:24:11,594 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
26 Jan 2024 17:24:11,601 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
26 Jan 2024 17:24:11,602 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
26 Jan 2024 17:24:11,602 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
26 Jan 2024 17:24:11,603 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
26 Jan 2024 17:24:11,603 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
26 Jan 2024 17:24:11,605 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
26 Jan 2024 17:24:11,612 INFO : Moving files to folder /Panorama Public/2024/U of Leipzig AG Bioanalytics - RBD_M_Glyco and creating symlinks
26 Jan 2024 17:24:23,032 INFO : Aligning data files urls in folder: /Panorama Public/2024/U of Leipzig AG Bioanalytics - RBD_M_Glyco
26 Jan 2024 17:24:23,038 INFO : Importing files metadata.
26 Jan 2024 17:24:23,040 INFO :
26 Jan 2024 17:24:23,040 INFO : Experiment import completed successfully.
26 Jan 2024 17:24:23,040 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
26 Jan 2024 17:24:23,067 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
26 Jan 2024 17:24:23,067 INFO :
26 Jan 2024 17:24:23,067 INFO : Checking for library folders.
26 Jan 2024 17:24:23,069 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
26 Jan 2024 17:24:23,093 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
26 Jan 2024 17:24:23,093 INFO :
26 Jan 2024 17:24:23,093 INFO : Finishing up experiment copy.
26 Jan 2024 17:24:23,094 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/U of Leipzig AG Bioanalytics - RBD_M_Glyco
26 Jan 2024 17:24:23,095 INFO : Setting version on new experiment to 1
26 Jan 2024 17:24:23,098 INFO : Updating permanent link to point to the new copy of the data.
26 Jan 2024 17:24:23,126 INFO : Removing copy permissions given to Panorama Public
26 Jan 2024 17:24:23,129 INFO : Adding read permissions to all users that are folder admins in the source folder.
26 Jan 2024 17:24:23,129 INFO : Assigning ReaderRole to daniela.volke@bbz.uni-leipzig.de
26 Jan 2024 17:24:23,129 INFO : Assigning ReaderRole to ralf.hoffmann@bbz.uni-leipzig.de
26 Jan 2024 17:24:23,129 INFO : Assigning PanoramaPublicSubmitterRole to daniela.volke@bbz.uni-leipzig.de
26 Jan 2024 17:24:23,130 INFO : Assigning PanoramaPublicSubmitterRole to ralf.hoffmann@bbz.uni-leipzig.de
26 Jan 2024 17:24:23,134 INFO : User daniela.volke@bbz.uni-leipzig.de is already a member of group Panorama Public Submitters
26 Jan 2024 17:24:23,134 INFO : User ralf.hoffmann@bbz.uni-leipzig.de is already a member of group Panorama Public Submitters
26 Jan 2024 17:24:23,134 INFO : Updating the 'Raw Data' tab configuration
26 Jan 2024 17:24:23,135 INFO : Creating a reviewer account.
26 Jan 2024 17:24:23,362 INFO : Created reviewer with email: User panorama+reviewer241@proteinms.net
26 Jan 2024 17:24:23,366 INFO : Adding user panorama+reviewer241@proteinms.net to group Reviewers
26 Jan 2024 17:24:23,368 INFO : Hiding the Data Pipeline tab.
26 Jan 2024 17:24:23,372 INFO : Updating Submission. Setting copiedExperimentId to 1768
26 Jan 2024 17:24:25,083 INFO : Assigning a ProteomeXchange ID.
26 Jan 2024 17:24:25,716 INFO : Assigned ProteomeXchange ID: PXD048930
26 Jan 2024 17:24:25,716 INFO : Assigning a DOI.
26 Jan 2024 17:24:26,502 INFO : Assigned DOI: 10.6069/pd43-2q47
26 Jan 2024 17:24:26,618 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'