Copying experiment: Assessment of Kinome-wide Rewiring Upon Picornavirus Infection

Utrecht U Targeted Proteomics - VethNouwen_2023

Job Status

Created: 2023-11-01 19:01:09
Modified: 2023-11-01 19:02:03
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Assessment of Kinome-wide Rewiring Upon Picornavirus Infection
File Path: /data/labkey/files/Panorama Public/2023/Utrecht U Targeted Proteomics - VethNouwen_2023/@files/Experiment_1803.log
Files: Experiment_1803.log
Completed Runs: CVB3_kinome_2023-10-31_04-41-10.sky.zip
EMCV_kinome_2023-10-31_04-42-06.sky.zip

Log File


01 Nov 2023 19:01:09,338 INFO : Copying experiment "Assessment of Kinome-wide Rewiring Upon Picornavirus Infection" from folder /Utrecht U - Targeted Proteomics/VethNouwen_2023 to /Panorama Public/2023/Utrecht U Targeted Proteomics - VethNouwen_2023
01 Nov 2023 19:01:09,338 INFO : =======================================
01 Nov 2023 19:01:09,381 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
01 Nov 2023 19:01:09,381 INFO :
01 Nov 2023 19:01:09,381 INFO : Exporting experiment.
01 Nov 2023 19:01:22,403 INFO : Exporting files metadata.
01 Nov 2023 19:01:22,407 INFO :
01 Nov 2023 19:01:22,407 INFO : Experiment export completed successfully.
01 Nov 2023 19:01:22,407 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
01 Nov 2023 19:01:22,428 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
01 Nov 2023 19:01:22,428 INFO :
01 Nov 2023 19:01:22,429 INFO : Importing experiment.
01 Nov 2023 19:01:22,680 INFO : Loading folder properties (folder type, settings and active modules)
01 Nov 2023 19:01:22,739 INFO : Done importing folder properties (folder type, settings and active modules)
01 Nov 2023 19:01:22,740 INFO : Loading container specific module properties
01 Nov 2023 19:01:22,744 INFO : Done importing container specific module properties
01 Nov 2023 19:01:22,745 INFO : Loading etl definitions
01 Nov 2023 19:01:22,746 INFO : Loading wikis
01 Nov 2023 19:01:22,754 INFO : 1 wiki imported
01 Nov 2023 19:01:22,755 INFO : Done importing wikis
01 Nov 2023 19:01:22,757 INFO : Starting Data Class Importer
01 Nov 2023 19:01:22,757 INFO : No types XAR file to process.
01 Nov 2023 19:01:22,757 INFO : Finished Data Class Importer
01 Nov 2023 19:01:22,759 INFO : Starting to copy files
01 Nov 2023 19:01:22,759 INFO : Copied 0 files
01 Nov 2023 19:01:22,759 INFO : Ensuring exp.data rows exist for imported files
01 Nov 2023 19:01:22,829 INFO : Starting Sample Type Importer
01 Nov 2023 19:01:22,829 INFO : No types XAR file to process.
01 Nov 2023 19:01:22,829 INFO : Finished Sample Type Importer
01 Nov 2023 19:01:22,830 INFO : Loading xar
01 Nov 2023 19:01:26,943 INFO : Starting import from CVB3_kinome_2023-10-31_04-41-10.sky.zip
01 Nov 2023 19:01:26,946 INFO : Starting to import Skyline document from CVB3_kinome_2023-10-31_04-41-10.sky.zip
01 Nov 2023 19:01:27,069 INFO : Expanding mTOR-iRT-20210310.irtdb
01 Nov 2023 19:01:27,089 INFO : Expanding FGFR_method_JPT1_HLlib_cortrans.blib
01 Nov 2023 19:01:27,214 INFO : Expanding 2nd_batch_peptides_PRM_PseudoMS2.blib
01 Nov 2023 19:01:27,216 INFO : Expanding PRM_HL_library_last_batch_PseudoMS2.blib
01 Nov 2023 19:01:27,400 INFO : Expanding FGFR_method_JPT1_HLlib_PseudoMS2.blib
01 Nov 2023 19:01:27,521 INFO : Expanding 02A11_AL_jpt_DDA_TripleTOF2.blib
01 Nov 2023 19:01:27,523 INFO : Expanding 02A11_AL_jpt_DDA_TripleTOF3.blib
01 Nov 2023 19:01:27,525 INFO : Expanding HpH_library_phosphoRS.blib
01 Nov 2023 19:01:27,527 INFO : Expanding TSQ_DDA_AL.blib
01 Nov 2023 19:01:27,544 INFO : Expanding CVB3_kinome.skyd
01 Nov 2023 19:01:28,605 INFO : Expanding CVB3_kinome.sky.view
01 Nov 2023 19:01:28,644 INFO : Expanding CVB3_kinome.sky
01 Nov 2023 19:01:28,805 INFO : Expanding CVB3_kinome.skyl
01 Nov 2023 19:01:28,979 INFO : 1% Done
01 Nov 2023 19:01:31,655 INFO : Inserting Biognosys standards
01 Nov 2023 19:01:31,661 INFO : 2% Done
01 Nov 2023 19:01:31,731 INFO : 3% Done
01 Nov 2023 19:01:31,760 INFO : 4% Done
01 Nov 2023 19:01:31,789 INFO : 5% Done
01 Nov 2023 19:01:31,848 INFO : 6% Done
01 Nov 2023 19:01:31,876 INFO : 7% Done
01 Nov 2023 19:01:31,904 INFO : 8% Done
01 Nov 2023 19:01:31,962 INFO : 9% Done
01 Nov 2023 19:01:31,988 INFO : Inserting sp|O15530|PDPK1_HUMAN
01 Nov 2023 19:01:31,998 INFO : 10% Done
01 Nov 2023 19:01:32,071 INFO : Inserting sp|P46734|MP2K3_HUMAN
01 Nov 2023 19:01:32,083 INFO : 12% Done
01 Nov 2023 19:01:32,175 INFO : Inserting sp|P49137|MAPK2_HUMAN
01 Nov 2023 19:01:32,184 INFO : 13% Done
01 Nov 2023 19:01:32,266 INFO : 14% Done
01 Nov 2023 19:01:32,266 INFO : Inserting sp|P10398|ARAF_HUMAN
01 Nov 2023 19:01:32,278 INFO : 15% Done
01 Nov 2023 19:01:32,366 INFO : Inserting sp|Q15418|KS6A1_HUMAN
01 Nov 2023 19:01:32,376 INFO : 17% Done
01 Nov 2023 19:01:32,456 INFO : 18% Done
01 Nov 2023 19:01:32,537 INFO : Inserting sp|P27361|MK03_HUMAN
01 Nov 2023 19:01:32,553 INFO : 19% Done
01 Nov 2023 19:01:32,674 INFO : 21% Done
01 Nov 2023 19:01:32,785 INFO : 22% Done
01 Nov 2023 19:01:32,874 INFO : Inserting sp|P05129|KPCG_HUMAN
01 Nov 2023 19:01:32,889 INFO : 24% Done
01 Nov 2023 19:01:32,984 INFO : Inserting sp|P06493|CDK1_HUMAN
01 Nov 2023 19:01:32,994 INFO : 25% Done
01 Nov 2023 19:01:33,082 INFO : Inserting sp|P12931|SRC_HUMAN
01 Nov 2023 19:01:33,093 INFO : 26% Done
01 Nov 2023 19:01:33,171 INFO : Inserting sp|P45983|MK08_HUMAN
01 Nov 2023 19:01:33,183 INFO : 27% Done
01 Nov 2023 19:01:33,273 INFO : Inserting sp|P45984|MK09_HUMAN
01 Nov 2023 19:01:33,283 INFO : 29% Done
01 Nov 2023 19:01:33,359 INFO : Inserting sp|P45984|MK09_HUMAN
01 Nov 2023 19:01:33,372 INFO : 31% Done
01 Nov 2023 19:01:33,461 INFO : Inserting sp|P45985|MP2K4_HUMAN
01 Nov 2023 19:01:33,471 INFO : 32% Done
01 Nov 2023 19:01:33,547 INFO : Inserting sp|P49840|GSK3A_HUMAN
01 Nov 2023 19:01:33,558 INFO : 33% Done
01 Nov 2023 19:01:33,645 INFO : Inserting sp|P51817|PRKX_HUMAN
01 Nov 2023 19:01:33,671 INFO : 35% Done
01 Nov 2023 19:01:33,783 INFO : Inserting sp|Q05655|KPCD_HUMAN
01 Nov 2023 19:01:33,793 INFO : 37% Done
01 Nov 2023 19:01:33,876 INFO : Inserting sp|Q16539|MK14_HUMAN
01 Nov 2023 19:01:33,885 INFO : 38% Done
01 Nov 2023 19:01:33,967 INFO : Inserting sp|Q16539|MK14_HUMAN
01 Nov 2023 19:01:33,976 INFO : 39% Done
01 Nov 2023 19:01:34,065 INFO : Inserting sp|P51812|KS6A3_HUMAN
01 Nov 2023 19:01:34,075 INFO : 40% Done
01 Nov 2023 19:01:34,158 INFO : Inserting sp|Q16539|MK14_HUMAN
01 Nov 2023 19:01:34,170 INFO : 42% Done
01 Nov 2023 19:01:34,268 INFO : Inserting sp|P45983|MK08_HUMAN
01 Nov 2023 19:01:34,278 INFO : 43% Done
01 Nov 2023 19:01:34,360 INFO : Inserting sp|P36507|MP2K2_HUMAN
01 Nov 2023 19:01:34,370 INFO : 45% Done
01 Nov 2023 19:01:34,452 INFO : 46% Done
01 Nov 2023 19:01:34,525 INFO : Inserting sp|P28482|MK01_HUMAN
01 Nov 2023 19:01:34,535 INFO : 47% Done
01 Nov 2023 19:01:34,608 INFO : Inserting sp|P07947|YES_HUMAN
01 Nov 2023 19:01:34,618 INFO : 49% Done
01 Nov 2023 19:01:34,703 INFO : Inserting sp|P22694|KAPCB_HUMAN
01 Nov 2023 19:01:34,714 INFO : 50% Done
01 Nov 2023 19:01:34,788 INFO : Inserting sp|P28482|MK01_HUMAN
01 Nov 2023 19:01:34,799 INFO : 51% Done
01 Nov 2023 19:01:34,881 INFO : Inserting sp|P50750|CDK9_HUMAN
01 Nov 2023 19:01:34,891 INFO : 53% Done
01 Nov 2023 19:01:34,970 INFO : Inserting sp|P21127|CD11B_HUMAN
01 Nov 2023 19:01:34,979 INFO : 54% Done
01 Nov 2023 19:01:35,054 INFO : Inserting sp|Q9UQ88|CD11A_HUMAN
01 Nov 2023 19:01:35,063 INFO : 55% Done
01 Nov 2023 19:01:35,142 INFO : Inserting sp|Q9HC98|NEK6_HUMAN
01 Nov 2023 19:01:35,152 INFO : 57% Done
01 Nov 2023 19:01:35,234 INFO : 58% Done
01 Nov 2023 19:01:35,308 INFO : Inserting sp|P31152|MK04_HUMAN
01 Nov 2023 19:01:35,318 INFO : 60% Done
01 Nov 2023 19:01:35,393 INFO : Inserting sp|Q8IW41|MAPK5_HUMAN
01 Nov 2023 19:01:35,403 INFO : 61% Done
01 Nov 2023 19:01:35,484 INFO : 62% Done
01 Nov 2023 19:01:35,556 INFO : Inserting sp|Q13627|DYR1A_HUMAN
01 Nov 2023 19:01:35,566 INFO : 64% Done
01 Nov 2023 19:01:35,640 INFO : Inserting sp|Q9P0L2|MARK1_HUMAN
01 Nov 2023 19:01:35,650 INFO : 65% Done
01 Nov 2023 19:01:35,728 INFO : 66% Done
01 Nov 2023 19:01:35,803 INFO : Inserting sp|O43781|DYRK3_HUMAN
01 Nov 2023 19:01:35,812 INFO : 68% Done
01 Nov 2023 19:01:35,887 INFO : Inserting sp|Q9NYV4|CDK12_HUMAN
01 Nov 2023 19:01:35,897 INFO : 69% Done
01 Nov 2023 19:01:35,970 INFO : Inserting sp|O96013|PAK4_HUMAN
01 Nov 2023 19:01:35,979 INFO : 71% Done
01 Nov 2023 19:01:36,060 INFO : 72% Done
01 Nov 2023 19:01:36,135 INFO : Inserting sp|Q15139|KPCD1_HUMAN
01 Nov 2023 19:01:36,147 INFO : 74% Done
01 Nov 2023 19:01:36,238 INFO : Inserting sp|P50613|CDK7_HUMAN
01 Nov 2023 19:01:36,333 INFO : 75% Done
01 Nov 2023 19:01:36,437 INFO : Inserting sp|Q96GX5|GWL_HUMAN
01 Nov 2023 19:01:36,448 INFO : 77% Done
01 Nov 2023 19:01:36,536 INFO : Inserting sp|Q13153|PAK1_HUMAN
01 Nov 2023 19:01:36,546 INFO : 79% Done
01 Nov 2023 19:01:36,618 INFO : Inserting sp|Q9BZL6|KPCD2_HUMAN
01 Nov 2023 19:01:36,631 INFO : 80% Done
01 Nov 2023 19:01:36,718 INFO : Inserting sp|O96017|CHK2_HUMAN
01 Nov 2023 19:01:36,728 INFO : 82% Done
01 Nov 2023 19:01:36,808 INFO : 83% Done
01 Nov 2023 19:01:36,881 INFO : Inserting sp|Q16566|KCC4_HUMAN
01 Nov 2023 19:01:36,890 INFO : 84% Done
01 Nov 2023 19:01:36,957 INFO : Inserting sp|P45984|MK09_HUMAN
01 Nov 2023 19:01:36,966 INFO : 86% Done
01 Nov 2023 19:01:37,042 INFO : Inserting sp|Q16513|PKN2_HUMAN
01 Nov 2023 19:01:37,055 INFO : 87% Done
01 Nov 2023 19:01:37,137 INFO : Inserting sp|Q6P5Z2|PKN3_HUMAN
01 Nov 2023 19:01:37,148 INFO : 89% Done
01 Nov 2023 19:01:37,228 INFO : Inserting sp|Q9H422|HIPK3_HUMAN
01 Nov 2023 19:01:37,238 INFO : 90% Done
01 Nov 2023 19:01:37,309 INFO : Inserting sp|P24941|CDK2_HUMAN
01 Nov 2023 19:01:37,320 INFO : 92% Done
01 Nov 2023 19:01:37,413 INFO : Inserting sp|Q92630|DYRK2_HUMAN
01 Nov 2023 19:01:37,425 INFO : 94% Done
01 Nov 2023 19:01:37,509 INFO : Inserting sp|P06241|FYN_HUMAN
01 Nov 2023 19:01:37,520 INFO : 95% Done
01 Nov 2023 19:01:37,604 INFO : Inserting sp|Q14289|FAK2_HUMAN
01 Nov 2023 19:01:37,615 INFO : 97% Done
01 Nov 2023 19:01:37,693 INFO : 98% Done
01 Nov 2023 19:01:37,766 INFO : Done parsing Skyline document.
01 Nov 2023 19:01:37,766 INFO : Calculating iRT correlations for 46 sample(s)
01 Nov 2023 19:01:37,770 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,772 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,775 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,777 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,780 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,782 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,785 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,787 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,790 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,792 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,794 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,797 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,799 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,802 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,804 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,806 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,809 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,811 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,814 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,816 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,818 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,821 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,823 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,826 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,828 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,830 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,833 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,835 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,838 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,840 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,843 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,845 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,848 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,850 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,852 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,855 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,857 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,860 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,862 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,864 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,867 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,869 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,872 INFO : Calculated iRT regression line by ignoring import value for standard: LGGNEQVTR
01 Nov 2023 19:01:37,874 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,876 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,879 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:37,879 INFO : Finished calculating iRT correlations for all samples. 46 had a regression line calculated.
01 Nov 2023 19:01:41,996 INFO : Creating and populating temp tables for Proportion values
01 Nov 2023 19:01:42,138 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
01 Nov 2023 19:01:42,370 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
01 Nov 2023 19:01:42,476 INFO : Cleaning up temp tables
01 Nov 2023 19:01:42,792 INFO : Completed import of Skyline document from CVB3_kinome_2023-10-31_04-41-10.sky.zip
01 Nov 2023 19:01:42,794 INFO : 100% Done
01 Nov 2023 19:01:42,799 INFO : Starting import from EMCV_kinome_2023-10-31_04-42-06.sky.zip
01 Nov 2023 19:01:42,801 INFO : Starting to import Skyline document from EMCV_kinome_2023-10-31_04-42-06.sky.zip
01 Nov 2023 19:01:42,858 INFO : Expanding mTOR-iRT-20210310.irtdb
01 Nov 2023 19:01:42,860 INFO : Expanding FGFR_method_JPT1_HLlib_cortrans.blib
01 Nov 2023 19:01:42,877 INFO : Expanding 2nd_batch_peptides_PRM_PseudoMS2.blib
01 Nov 2023 19:01:42,879 INFO : Expanding PRM_HL_library_last_batch_PseudoMS2.blib
01 Nov 2023 19:01:42,880 INFO : Expanding FGFR_method_JPT1_HLlib_PseudoMS2.blib
01 Nov 2023 19:01:42,882 INFO : Expanding 02A11_AL_jpt_DDA_TripleTOF2.blib
01 Nov 2023 19:01:42,882 INFO : Expanding 02A11_AL_jpt_DDA_TripleTOF3.blib
01 Nov 2023 19:01:42,884 INFO : Expanding HpH_library_phosphoRS.blib
01 Nov 2023 19:01:42,886 INFO : Expanding TSQ_DDA_AL.blib
01 Nov 2023 19:01:42,902 INFO : Expanding EMCV_kinome.skyd
01 Nov 2023 19:01:43,568 INFO : Expanding EMCV_kinome.sky.view
01 Nov 2023 19:01:43,731 INFO : Expanding EMCV_kinome.sky
01 Nov 2023 19:01:43,768 INFO : Expanding EMCV_kinome.skyl
01 Nov 2023 19:01:43,963 INFO : 1% Done
01 Nov 2023 19:01:46,682 INFO : Inserting Biognosys standards
01 Nov 2023 19:01:46,721 INFO : 2% Done
01 Nov 2023 19:01:46,750 INFO : 3% Done
01 Nov 2023 19:01:46,805 INFO : 4% Done
01 Nov 2023 19:01:46,833 INFO : 5% Done
01 Nov 2023 19:01:46,862 INFO : 6% Done
01 Nov 2023 19:01:46,918 INFO : 7% Done
01 Nov 2023 19:01:46,947 INFO : 8% Done
01 Nov 2023 19:01:46,999 INFO : Inserting sp|O15530|PDPK1_HUMAN
01 Nov 2023 19:01:47,008 INFO : 10% Done
01 Nov 2023 19:01:47,081 INFO : Inserting sp|P46734|MP2K3_HUMAN
01 Nov 2023 19:01:47,091 INFO : 11% Done
01 Nov 2023 19:01:47,174 INFO : Inserting sp|P49137|MAPK2_HUMAN
01 Nov 2023 19:01:47,183 INFO : 12% Done
01 Nov 2023 19:01:47,249 INFO : Inserting sp|P10398|ARAF_HUMAN
01 Nov 2023 19:01:47,260 INFO : 14% Done
01 Nov 2023 19:01:47,348 INFO : Inserting sp|Q15418|KS6A1_HUMAN
01 Nov 2023 19:01:47,356 INFO : 15% Done
01 Nov 2023 19:01:47,434 INFO : 17% Done
01 Nov 2023 19:01:47,508 INFO : Inserting sp|P27361|MK03_HUMAN
01 Nov 2023 19:01:47,519 INFO : 18% Done
01 Nov 2023 19:01:47,614 INFO : 20% Done
01 Nov 2023 19:01:47,704 INFO : Inserting sp|P05129|KPCG_HUMAN
01 Nov 2023 19:01:47,716 INFO : 21% Done
01 Nov 2023 19:01:47,797 INFO : Inserting sp|P06493|CDK1_HUMAN
01 Nov 2023 19:01:47,805 INFO : 23% Done
01 Nov 2023 19:01:47,880 INFO : Inserting sp|P12931|SRC_HUMAN
01 Nov 2023 19:01:47,889 INFO : 24% Done
01 Nov 2023 19:01:47,964 INFO : Inserting sp|P45983|MK08_HUMAN
01 Nov 2023 19:01:47,973 INFO : 25% Done
01 Nov 2023 19:01:48,048 INFO : Inserting sp|P45983|MK08_HUMAN
01 Nov 2023 19:01:48,059 INFO : 26% Done
01 Nov 2023 19:01:48,153 INFO : Inserting sp|P45984|MK09_HUMAN
01 Nov 2023 19:01:48,163 INFO : 27% Done
01 Nov 2023 19:01:48,238 INFO : Inserting sp|P45984|MK09_HUMAN
01 Nov 2023 19:01:48,251 INFO : 29% Done
01 Nov 2023 19:01:48,344 INFO : Inserting sp|P45985|MP2K4_HUMAN
01 Nov 2023 19:01:48,354 INFO : 30% Done
01 Nov 2023 19:01:48,430 INFO : Inserting sp|P49840|GSK3A_HUMAN
01 Nov 2023 19:01:48,440 INFO : 31% Done
01 Nov 2023 19:01:48,513 INFO : Inserting sp|Q05397|FAK1_HUMAN
01 Nov 2023 19:01:48,524 INFO : 32% Done
01 Nov 2023 19:01:48,598 INFO : Inserting sp|Q05655|KPCD_HUMAN
01 Nov 2023 19:01:48,608 INFO : 34% Done
01 Nov 2023 19:01:48,686 INFO : Inserting sp|Q16539|MK14_HUMAN
01 Nov 2023 19:01:48,694 INFO : 35% Done
01 Nov 2023 19:01:48,777 INFO : 36% Done
01 Nov 2023 19:01:48,857 INFO : Inserting sp|Q16539|MK14_HUMAN
01 Nov 2023 19:01:48,865 INFO : 38% Done
01 Nov 2023 19:01:48,950 INFO : 39% Done
01 Nov 2023 19:01:49,038 INFO : Inserting sp|P51812|KS6A3_HUMAN
01 Nov 2023 19:01:49,047 INFO : 40% Done
01 Nov 2023 19:01:49,120 INFO : Inserting sp|Q16539|MK14_HUMAN
01 Nov 2023 19:01:49,130 INFO : 42% Done
01 Nov 2023 19:01:49,216 INFO : Inserting sp|P36507|MP2K2_HUMAN
01 Nov 2023 19:01:49,225 INFO : 43% Done
01 Nov 2023 19:01:49,307 INFO : 45% Done
01 Nov 2023 19:01:49,381 INFO : Inserting sp|P28482|MK01_HUMAN
01 Nov 2023 19:01:49,390 INFO : 46% Done
01 Nov 2023 19:01:49,464 INFO : Inserting sp|P07947|YES_HUMAN
01 Nov 2023 19:01:49,472 INFO : 47% Done
01 Nov 2023 19:01:49,546 INFO : Inserting sp|P22694|KAPCB_HUMAN
01 Nov 2023 19:01:49,555 INFO : 48% Done
01 Nov 2023 19:01:49,629 INFO : Inserting sp|P28482|MK01_HUMAN
01 Nov 2023 19:01:49,640 INFO : 50% Done
01 Nov 2023 19:01:49,724 INFO : 52% Done
01 Nov 2023 19:01:49,823 INFO : Inserting sp|P50750|CDK9_HUMAN
01 Nov 2023 19:01:49,832 INFO : 53% Done
01 Nov 2023 19:01:49,904 INFO : Inserting sp|P21127|CD11B_HUMAN
01 Nov 2023 19:01:49,911 INFO : 54% Done
01 Nov 2023 19:01:49,981 INFO : Inserting sp|Q9UQ88|CD11A_HUMAN
01 Nov 2023 19:01:49,989 INFO : 55% Done
01 Nov 2023 19:01:50,060 INFO : Inserting sp|Q8IU85|KCC1D_HUMAN
01 Nov 2023 19:01:50,069 INFO : 57% Done
01 Nov 2023 19:01:50,141 INFO : Inserting sp|Q16659|MK06_HUMAN
01 Nov 2023 19:01:50,149 INFO : 58% Done
01 Nov 2023 19:01:50,222 INFO : Inserting sp|P31152|MK04_HUMAN
01 Nov 2023 19:01:50,231 INFO : 59% Done
01 Nov 2023 19:01:50,304 INFO : Inserting sp|Q8IW41|MAPK5_HUMAN
01 Nov 2023 19:01:50,313 INFO : 60% Done
01 Nov 2023 19:01:50,394 INFO : 62% Done
01 Nov 2023 19:01:50,472 INFO : Inserting sp|Q13627|DYR1A_HUMAN
01 Nov 2023 19:01:50,481 INFO : 63% Done
01 Nov 2023 19:01:50,577 INFO : Inserting sp|Q9P0L2|MARK1_HUMAN
01 Nov 2023 19:01:50,586 INFO : 64% Done
01 Nov 2023 19:01:50,670 INFO : 65% Done
01 Nov 2023 19:01:50,748 INFO : Inserting sp|O43781|DYRK3_HUMAN
01 Nov 2023 19:01:50,757 INFO : 67% Done
01 Nov 2023 19:01:50,834 INFO : Inserting sp|Q9NYV4|CDK12_HUMAN
01 Nov 2023 19:01:50,843 INFO : 68% Done
01 Nov 2023 19:01:50,918 INFO : Inserting sp|O96013|PAK4_HUMAN
01 Nov 2023 19:01:50,927 INFO : 69% Done
01 Nov 2023 19:01:51,012 INFO : 71% Done
01 Nov 2023 19:01:51,107 INFO : Inserting sp|Q15139|KPCD1_HUMAN
01 Nov 2023 19:01:51,118 INFO : 72% Done
01 Nov 2023 19:01:51,205 INFO : Inserting sp|P50613|CDK7_HUMAN
01 Nov 2023 19:01:51,214 INFO : 73% Done
01 Nov 2023 19:01:51,297 INFO : 74% Done
01 Nov 2023 19:01:51,387 INFO : Inserting sp|Q96GX5|GWL_HUMAN
01 Nov 2023 19:01:51,398 INFO : 76% Done
01 Nov 2023 19:01:51,481 INFO : Inserting sp|Q13153|PAK1_HUMAN
01 Nov 2023 19:01:51,490 INFO : 77% Done
01 Nov 2023 19:01:51,564 INFO : Inserting sp|Q9BZL6|KPCD2_HUMAN
01 Nov 2023 19:01:51,577 INFO : 78% Done
01 Nov 2023 19:01:51,671 INFO : Inserting sp|O96017|CHK2_HUMAN
01 Nov 2023 19:01:51,680 INFO : 80% Done
01 Nov 2023 19:01:51,760 INFO : 81% Done
01 Nov 2023 19:01:51,833 INFO : Inserting sp|Q16566|KCC4_HUMAN
01 Nov 2023 19:01:51,841 INFO : 82% Done
01 Nov 2023 19:01:51,916 INFO : Inserting sp|P45984|MK09_HUMAN
01 Nov 2023 19:01:51,924 INFO : 83% Done
01 Nov 2023 19:01:51,997 INFO : 84% Done
01 Nov 2023 19:01:51,997 INFO : Inserting sp|Q16513|PKN2_HUMAN
01 Nov 2023 19:01:52,009 INFO : 85% Done
01 Nov 2023 19:01:52,097 INFO : Inserting sp|Q6P5Z2|PKN3_HUMAN
01 Nov 2023 19:01:52,105 INFO : 86% Done
01 Nov 2023 19:01:52,176 INFO : Inserting sp|Q9H422|HIPK3_HUMAN
01 Nov 2023 19:01:52,184 INFO : 88% Done
01 Nov 2023 19:01:52,254 INFO : Inserting sp|P24941|CDK2_HUMAN
01 Nov 2023 19:01:52,264 INFO : 89% Done
01 Nov 2023 19:01:52,347 INFO : Inserting sp|Q92630|DYRK2_HUMAN
01 Nov 2023 19:01:52,358 INFO : 91% Done
01 Nov 2023 19:01:52,442 INFO : Inserting sp|P06241|FYN_HUMAN
01 Nov 2023 19:01:52,452 INFO : 92% Done
01 Nov 2023 19:01:52,559 INFO : Inserting sp|Q05397|FAK1_HUMAN
01 Nov 2023 19:01:52,569 INFO : 94% Done
01 Nov 2023 19:01:52,644 INFO : Inserting sp|P51817|PRKX_HUMAN
01 Nov 2023 19:01:52,665 INFO : 95% Done
01 Nov 2023 19:01:52,767 INFO : 96% Done
01 Nov 2023 19:01:52,767 INFO : Inserting sp|Q14289|FAK2_HUMAN
01 Nov 2023 19:01:52,778 INFO : 97% Done
01 Nov 2023 19:01:52,859 INFO : 98% Done
01 Nov 2023 19:01:52,932 INFO : Done parsing Skyline document.
01 Nov 2023 19:01:52,932 INFO : Calculating iRT correlations for 46 sample(s)
01 Nov 2023 19:01:52,936 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,939 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,941 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,944 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,946 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,949 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,951 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,954 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,956 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,959 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,961 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,964 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,966 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,969 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,971 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,974 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,976 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,979 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,981 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,984 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,986 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,989 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,991 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,994 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,996 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:52,998 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,001 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,003 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,006 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,008 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,011 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,013 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,016 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,018 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,021 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,023 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,026 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,028 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,030 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,033 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,035 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,038 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,040 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,043 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,045 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,048 INFO : Calculated iRT regression line from full standard list.
01 Nov 2023 19:01:53,048 INFO : Finished calculating iRT correlations for all samples. 46 had a regression line calculated.
01 Nov 2023 19:01:56,749 INFO : Creating and populating temp tables for Proportion values
01 Nov 2023 19:01:56,893 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
01 Nov 2023 19:01:57,127 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
01 Nov 2023 19:01:57,236 INFO : Cleaning up temp tables
01 Nov 2023 19:01:57,488 INFO : Completed import of Skyline document from EMCV_kinome_2023-10-31_04-42-06.sky.zip
01 Nov 2023 19:01:57,490 INFO : 100% Done
01 Nov 2023 19:01:57,503 INFO : Done importing xar
01 Nov 2023 19:01:57,504 INFO : Loading pages and webpart properties
01 Nov 2023 19:01:57,562 INFO : Done importing 3 page(s) with 6 webpart(s)
01 Nov 2023 19:01:57,562 INFO : Loading File Browser config
01 Nov 2023 19:01:57,562 INFO : Done importing File Browser config
01 Nov 2023 19:01:57,563 INFO : Starting Sample Status Data import
01 Nov 2023 19:01:57,563 INFO : No sample types XAR file to process.
01 Nov 2023 19:01:57,563 INFO : Finished importing Sample Status Data
01 Nov 2023 19:01:57,567 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
01 Nov 2023 19:01:57,569 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
01 Nov 2023 19:01:57,569 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
01 Nov 2023 19:01:57,570 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
01 Nov 2023 19:01:57,570 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
01 Nov 2023 19:01:57,570 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
01 Nov 2023 19:01:57,572 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
01 Nov 2023 19:01:57,586 INFO : Moving files to folder /Panorama Public/2023/Utrecht U Targeted Proteomics - VethNouwen_2023 and creating symlinks
01 Nov 2023 19:02:00,446 INFO : Aligning data files urls in folder: /Panorama Public/2023/Utrecht U Targeted Proteomics - VethNouwen_2023
01 Nov 2023 19:02:00,458 INFO : Importing files metadata.
01 Nov 2023 19:02:00,459 INFO :
01 Nov 2023 19:02:00,459 INFO : Experiment import completed successfully.
01 Nov 2023 19:02:00,459 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
01 Nov 2023 19:02:00,480 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
01 Nov 2023 19:02:00,480 INFO :
01 Nov 2023 19:02:00,480 INFO : Checking for library folders.
01 Nov 2023 19:02:00,481 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
01 Nov 2023 19:02:00,497 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
01 Nov 2023 19:02:00,497 INFO :
01 Nov 2023 19:02:00,497 INFO : Finishing up experiment copy.
01 Nov 2023 19:02:00,498 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/Utrecht U Targeted Proteomics - VethNouwen_2023
01 Nov 2023 19:02:00,499 INFO : Setting version on new experiment to 1
01 Nov 2023 19:02:00,501 INFO : Updating permanent link to point to the new copy of the data.
01 Nov 2023 19:02:00,506 INFO : Removing copy permissions given to Panorama Public
01 Nov 2023 19:02:00,514 INFO : Adding read permissions to all users that are folder admins in the source folder.
01 Nov 2023 19:02:00,515 INFO : Assigning ReaderRole to t.s.veth@uu.nl
01 Nov 2023 19:02:00,515 INFO : Assigning PanoramaPublicSubmitterRole to t.s.veth@uu.nl
01 Nov 2023 19:02:00,522 INFO : User t.s.veth@uu.nl is already a member of group Panorama Public Submitters
01 Nov 2023 19:02:00,522 INFO : Updating the 'Raw Data' tab configuration
01 Nov 2023 19:02:00,523 INFO : Creating a reviewer account.
01 Nov 2023 19:02:00,712 INFO : Created reviewer with email: User panorama+reviewer222@proteinms.net
01 Nov 2023 19:02:00,722 INFO : Adding user panorama+reviewer222@proteinms.net to group Reviewers
01 Nov 2023 19:02:00,724 INFO : Hiding the Data Pipeline tab.
01 Nov 2023 19:02:00,729 INFO : Updating Submission. Setting copiedExperimentId to 1718
01 Nov 2023 19:02:02,267 INFO : Assigning a ProteomeXchange ID.
01 Nov 2023 19:02:02,617 INFO : Assigned ProteomeXchange ID: PXD046598
01 Nov 2023 19:02:02,617 INFO : Assigning a DOI.
01 Nov 2023 19:02:03,299 INFO : Assigned DOI: 10.6069/d9ae-e434
01 Nov 2023 19:02:03,353 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'