03 Dec 2023 00:11:22,405 INFO : Copying experiment "It’s a trap: ClpP substrates caught in action" from folder /TUM - Sieber Lab/ClpP Substrate Trap to /Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap
03 Dec 2023 00:11:22,405 INFO : =======================================
03 Dec 2023 00:11:22,421 DEBUG: Resetting Job ID: 0a353f31-73e1-103c-bc68-fea6ddf5ace0
03 Dec 2023 00:11:22,442 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
03 Dec 2023 00:11:22,442 INFO :
03 Dec 2023 00:11:22,442 INFO : Exporting experiment.
03 Dec 2023 00:11:28,719 INFO : Exporting files metadata.
03 Dec 2023 00:11:28,719 DEBUG: [/TUM - Sieber Lab/ClpP Substrate Trap] Writing files metadata to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/export
03 Dec 2023 00:11:28,721 INFO :
03 Dec 2023 00:11:28,721 INFO : Experiment export completed successfully.
03 Dec 2023 00:11:28,721 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
03 Dec 2023 00:11:28,739 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
03 Dec 2023 00:11:28,739 INFO :
03 Dec 2023 00:11:28,739 INFO : Importing experiment.
03 Dec 2023 00:11:28,740 DEBUG: [/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap] Importing folder properties from: /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/export
03 Dec 2023 00:11:28,741 INFO : Loading folder properties (folder type, settings and active modules)
03 Dec 2023 00:11:28,741 DEBUG: [/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap] Folder type: Targeted MS
03 Dec 2023 00:11:28,741 DEBUG: [/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap] Active modules: Wiki, Core, PanoramaPublic, Experiment, Issues, FileContent, Assay, API, TargetedMS, MS2, Query, Pipeline, Announcements, Search
03 Dec 2023 00:11:28,841 INFO : Done importing folder properties (folder type, settings and active modules)
03 Dec 2023 00:11:28,842 INFO : Loading container specific module properties
03 Dec 2023 00:11:28,845 INFO : Done importing container specific module properties
03 Dec 2023 00:11:28,847 INFO : Loading etl definitions
03 Dec 2023 00:11:28,848 INFO : Loading wikis
03 Dec 2023 00:11:28,849 INFO : 0 wikis imported
03 Dec 2023 00:11:28,849 INFO : Done importing wikis
03 Dec 2023 00:11:28,850 INFO : Starting Data Class Importer
03 Dec 2023 00:11:28,850 INFO : No types XAR file to process.
03 Dec 2023 00:11:28,850 INFO : Finished Data Class Importer
03 Dec 2023 00:11:28,851 INFO : Starting to copy files
03 Dec 2023 00:11:28,851 INFO : Copied 0 files
03 Dec 2023 00:11:28,851 INFO : Ensuring exp.data rows exist for imported files
03 Dec 2023 00:11:28,902 INFO : Starting Sample Type Importer
03 Dec 2023 00:11:28,902 INFO : No types XAR file to process.
03 Dec 2023 00:11:28,902 INFO : Finished Sample Type Importer
03 Dec 2023 00:11:28,903 INFO : Loading xar
03 Dec 2023 00:11:30,096 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12370:TargetedMS.ImportSkyZip'
03 Dec 2023 00:11:30,098 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12370:TargetedMS.ImportSkyZip.Core'
03 Dec 2023 00:11:30,100 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12370:TargetedMS.ImportSkyZip.Output'
03 Dec 2023 00:11:30,100 DEBUG: Protocol import complete
03 Dec 2023 00:11:30,101 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-12370:It%E2%80%99s+a+trap%3A+ClpP+substrates+caught+in+action'
03 Dec 2023 00:11:30,101 DEBUG: Experiment/Run group import complete
03 Dec 2023 00:11:30,109 DEBUG: Protocol action set import complete
03 Dec 2023 00:11:30,117 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12370:TargetedMS.ImportSkyZip'
03 Dec 2023 00:11:30,123 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-12370:9c519d8d-725b-103c-bc68-fea6ddf5ace0'
03 Dec 2023 00:11:30,126 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-12370:9c519cd3-725b-103c-bc68-fea6ddf5ace0'
03 Dec 2023 00:11:30,126 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12370:TargetedMS.ImportSkyZip.Core'
03 Dec 2023 00:11:30,128 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12370:TargetedMS.ImportSkyZip.Output'
03 Dec 2023 00:11:30,129 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-12370:9c519f2b-725b-103c-bc68-fea6ddf5ace0'
03 Dec 2023 00:11:30,131 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/TUM%20Sieber%20Lab%20-%20ClpP%20Substrate%20Trap/@files/export/xar/experiments_and_runs.xar.exploded/Run178336/PRM%20final_2023-12-01_10-41-41/PRM%20final.skyd into the system
03 Dec 2023 00:11:30,131 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/TUM%20Sieber%20Lab%20-%20ClpP%20Substrate%20Trap/@files/export/xar/experiments_and_runs.xar.exploded/Run178336/PRM%20final_2023-12-01_10-41-41/PRM%20final.skyd into the system
03 Dec 2023 00:11:30,131 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/TUM%20Sieber%20Lab%20-%20ClpP%20Substrate%20Trap/@files/export/xar/experiments_and_runs.xar.exploded/Run178336/PRM%20final_2023-12-01_10-41-41.sky.zip into the system
03 Dec 2023 00:11:30,132 INFO : Starting import from PRM final_2023-12-01_10-41-41.sky.zip
03 Dec 2023 00:11:30,136 INFO : Starting to import Skyline document from PRM final_2023-12-01_10-41-41.sky.zip
03 Dec 2023 00:11:30,168 INFO : Expanding iRT final.irtdb
03 Dec 2023 00:11:30,169 INFO : Expanding PRM final.blib
03 Dec 2023 00:11:30,188 INFO : Expanding PRM final.redundant.blib
03 Dec 2023 00:11:30,579 INFO : Expanding PRM final.skyd
03 Dec 2023 00:11:30,982 INFO : Expanding PRM final.sky.view
03 Dec 2023 00:11:30,984 INFO : Expanding PRM final.sky
03 Dec 2023 00:11:30,988 INFO : Expanding PRM final.skyl
03 Dec 2023 00:11:31,054 INFO : 2% Done
03 Dec 2023 00:11:31,577 DEBUG: Starting to load chromatogram headers
03 Dec 2023 00:11:31,584 DEBUG: Done loading chromatogram headers
03 Dec 2023 00:11:31,743 INFO : Inserting tr|Q2FYF9|Q2FYF9_STAA8
03 Dec 2023 00:11:31,754 INFO : 4% Done
03 Dec 2023 00:11:31,771 INFO : 6% Done
03 Dec 2023 00:11:31,785 INFO : 9% Done
03 Dec 2023 00:11:31,799 INFO : 11% Done
03 Dec 2023 00:11:31,812 INFO : 13% Done
03 Dec 2023 00:11:31,827 INFO : 15% Done
03 Dec 2023 00:11:31,837 DEBUG: Total peptides inserted: 6
03 Dec 2023 00:11:31,837 INFO : Inserting tr|Q2FVQ0|Q2FVQ0_STAA8
03 Dec 2023 00:11:31,845 INFO : 18% Done
03 Dec 2023 00:11:31,859 INFO : 20% Done
03 Dec 2023 00:11:31,872 INFO : 22% Done
03 Dec 2023 00:11:31,886 INFO : 24% Done
03 Dec 2023 00:11:31,899 INFO : 26% Done
03 Dec 2023 00:11:31,909 DEBUG: Total peptides inserted: 5
03 Dec 2023 00:11:31,909 INFO : Inserting tr|Q2FXJ6|Q2FXJ6_STAA8
03 Dec 2023 00:11:31,915 INFO : 28% Done
03 Dec 2023 00:11:31,933 INFO : 30% Done
03 Dec 2023 00:11:31,950 INFO : 33% Done
03 Dec 2023 00:11:31,964 INFO : 35% Done
03 Dec 2023 00:11:31,977 INFO : 37% Done
03 Dec 2023 00:11:31,990 INFO : 39% Done
03 Dec 2023 00:11:32,000 DEBUG: Total peptides inserted: 6
03 Dec 2023 00:11:32,000 INFO : Inserting tr|Q2FWC9|Q2FWC9_STAA8
03 Dec 2023 00:11:32,006 INFO : 41% Done
03 Dec 2023 00:11:32,018 INFO : 43% Done
03 Dec 2023 00:11:32,032 INFO : 45% Done
03 Dec 2023 00:11:32,041 DEBUG: Total peptides inserted: 3
03 Dec 2023 00:11:32,042 INFO : 46% Done
03 Dec 2023 00:11:32,042 INFO : Inserting sp|Q2FYF1|EBPS_STAA8
03 Dec 2023 00:11:32,050 INFO : 48% Done
03 Dec 2023 00:11:32,064 INFO : 50% Done
03 Dec 2023 00:11:32,077 INFO : 52% Done
03 Dec 2023 00:11:32,092 INFO : 54% Done
03 Dec 2023 00:11:32,105 INFO : 57% Done
03 Dec 2023 00:11:32,115 DEBUG: Total peptides inserted: 5
03 Dec 2023 00:11:32,115 INFO : Inserting sp|Q2FVA4|Y2829_STAA8
03 Dec 2023 00:11:32,122 INFO : 59% Done
03 Dec 2023 00:11:32,135 INFO : 61% Done
03 Dec 2023 00:11:32,150 INFO : 63% Done
03 Dec 2023 00:11:32,163 INFO : 66% Done
03 Dec 2023 00:11:32,181 DEBUG: Total peptides inserted: 4
03 Dec 2023 00:11:32,181 INFO : Inserting sp|Q2FV64|COPA_STAA8
03 Dec 2023 00:11:32,188 INFO : 68% Done
03 Dec 2023 00:11:32,201 INFO : 70% Done
03 Dec 2023 00:11:32,214 INFO : 72% Done
03 Dec 2023 00:11:32,227 INFO : 74% Done
03 Dec 2023 00:11:32,237 DEBUG: Total peptides inserted: 4
03 Dec 2023 00:11:32,237 INFO : Inserting sp|Q2FVT6|HUTI_STAA8
03 Dec 2023 00:11:32,244 INFO : 75% Done
03 Dec 2023 00:11:32,256 INFO : 77% Done
03 Dec 2023 00:11:32,270 INFO : 80% Done
03 Dec 2023 00:11:32,280 DEBUG: Total peptides inserted: 3
03 Dec 2023 00:11:32,280 INFO : Inserting Biognosys standards
03 Dec 2023 00:11:32,283 INFO : 81% Done
03 Dec 2023 00:11:32,295 INFO : 83% Done
03 Dec 2023 00:11:32,307 INFO : 85% Done
03 Dec 2023 00:11:32,319 INFO : 87% Done
03 Dec 2023 00:11:32,330 INFO : 89% Done
03 Dec 2023 00:11:32,342 INFO : 91% Done
03 Dec 2023 00:11:32,355 INFO : 92% Done
03 Dec 2023 00:11:32,366 INFO : 95% Done
03 Dec 2023 00:11:32,377 INFO : 96% Done
03 Dec 2023 00:11:32,389 INFO : 98% Done
03 Dec 2023 00:11:32,398 DEBUG: Total peptides inserted: 10
03 Dec 2023 00:11:32,402 INFO : Done parsing Skyline document.
03 Dec 2023 00:11:32,402 INFO : Calculating iRT correlations for 8 sample(s)
03 Dec 2023 00:11:32,407 INFO : Calculated iRT regression line from full standard list.
03 Dec 2023 00:11:32,411 INFO : Calculated iRT regression line from full standard list.
03 Dec 2023 00:11:32,415 INFO : Calculated iRT regression line from full standard list.
03 Dec 2023 00:11:32,419 INFO : Calculated iRT regression line from full standard list.
03 Dec 2023 00:11:32,424 INFO : Calculated iRT regression line from full standard list.
03 Dec 2023 00:11:32,428 INFO : Calculated iRT regression line from full standard list.
03 Dec 2023 00:11:32,432 INFO : Calculated iRT regression line from full standard list.
03 Dec 2023 00:11:32,436 INFO : Calculated iRT regression line from full standard list.
03 Dec 2023 00:11:32,437 INFO : Finished calculating iRT correlations for all samples. 8 had a regression line calculated.
03 Dec 2023 00:11:32,676 INFO : Creating and populating temp tables for Proportion values
03 Dec 2023 00:11:32,785 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Dec 2023 00:11:32,801 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Dec 2023 00:11:32,811 INFO : Cleaning up temp tables
03 Dec 2023 00:11:33,099 INFO : Completed import of Skyline document from PRM final_2023-12-01_10-41-41.sky.zip
03 Dec 2023 00:11:33,101 INFO : 100% Done
03 Dec 2023 00:11:33,104 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/TUM%20Sieber%20Lab%20-%20ClpP%20Substrate%20Trap/@files/export/xar/experiments_and_runs.xar.exploded/Run178336/PRM%20final_2023-12-01_10-41-41.sky.zip into the system
03 Dec 2023 00:11:33,109 INFO : Done importing xar
03 Dec 2023 00:11:33,110 INFO : Loading pages and webpart properties
03 Dec 2023 00:11:33,167 INFO : Done importing 3 page(s) with 5 webpart(s)
03 Dec 2023 00:11:33,168 INFO : Loading File Browser config
03 Dec 2023 00:11:33,168 INFO : Done importing File Browser config
03 Dec 2023 00:11:33,169 INFO : Starting Sample Status Data import
03 Dec 2023 00:11:33,169 INFO : No sample types XAR file to process.
03 Dec 2023 00:11:33,169 INFO : Finished importing Sample Status Data
03 Dec 2023 00:11:33,173 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
03 Dec 2023 00:11:33,176 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
03 Dec 2023 00:11:33,176 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
03 Dec 2023 00:11:33,177 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
03 Dec 2023 00:11:33,177 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
03 Dec 2023 00:11:33,177 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
03 Dec 2023 00:11:33,179 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
03 Dec 2023 00:11:33,183 INFO : Moving files to folder /Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap and creating symlinks
03 Dec 2023 00:11:33,185 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41.sky.zip to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41.sky.zip
03 Dec 2023 00:11:33,186 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41.sky.zip targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41.sky.zip
03 Dec 2023 00:11:33,188 DEBUG: Directory created: /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles
03 Dec 2023 00:11:33,189 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_WT_3.raw to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_WT_3.raw
03 Dec 2023 00:11:33,190 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_WT_3.raw targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_WT_3.raw
03 Dec 2023 00:11:33,191 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_S98A_3.raw to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_S98A_3.raw
03 Dec 2023 00:11:33,192 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_S98A_3.raw targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_S98A_3.raw
03 Dec 2023 00:11:33,194 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/msms.txt to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/msms.txt
03 Dec 2023 00:11:33,195 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/msms.txt targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/msms.txt
03 Dec 2023 00:11:33,196 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/mqpar.xml to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/mqpar.xml
03 Dec 2023 00:11:33,197 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/mqpar.xml targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/mqpar.xml
03 Dec 2023 00:11:33,198 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_WT_4.raw to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_WT_4.raw
03 Dec 2023 00:11:33,199 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_WT_4.raw targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_WT_4.raw
03 Dec 2023 00:11:33,201 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_S98A_4.raw to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_S98A_4.raw
03 Dec 2023 00:11:33,202 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_S98A_4.raw targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_S98A_4.raw
03 Dec 2023 00:11:33,202 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_S98A_2.raw to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_S98A_2.raw
03 Dec 2023 00:11:33,203 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_S98A_2.raw targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_S98A_2.raw
03 Dec 2023 00:11:33,204 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/evidence.txt to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/evidence.txt
03 Dec 2023 00:11:33,205 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/evidence.txt targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/evidence.txt
03 Dec 2023 00:11:33,206 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_WT_1.raw to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_WT_1.raw
03 Dec 2023 00:11:33,206 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_WT_1.raw targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_WT_1.raw
03 Dec 2023 00:11:33,208 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_WT_2.raw to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_WT_2.raw
03 Dec 2023 00:11:33,209 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_WT_2.raw targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_WT_2.raw
03 Dec 2023 00:11:33,209 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_S98A_1.raw to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_S98A_1.raw
03 Dec 2023 00:11:33,210 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/RawFiles/PRM_S98A_1.raw targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/RawFiles/PRM_S98A_1.raw
03 Dec 2023 00:11:33,211 DEBUG: Directory created: /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41
03 Dec 2023 00:11:33,214 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyd to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyd
03 Dec 2023 00:11:33,215 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyd targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyd
03 Dec 2023 00:11:33,218 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.sky to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.sky
03 Dec 2023 00:11:33,219 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.sky targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.sky
03 Dec 2023 00:11:33,221 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.sky.view to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.sky.view
03 Dec 2023 00:11:33,222 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.sky.view targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.sky.view
03 Dec 2023 00:11:33,224 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/iRT final.irtdb to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/iRT final.irtdb
03 Dec 2023 00:11:33,225 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/iRT final.irtdb targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/iRT final.irtdb
03 Dec 2023 00:11:33,227 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyl to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyl
03 Dec 2023 00:11:33,228 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyl targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyl
03 Dec 2023 00:11:33,230 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.redundant.blib to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.redundant.blib
03 Dec 2023 00:11:33,231 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.redundant.blib targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.redundant.blib
03 Dec 2023 00:11:33,232 DEBUG: Moved file /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.blib to /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.blib
03 Dec 2023 00:11:33,233 DEBUG: Created symlink /data/labkey/files/TUM - Sieber Lab/ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.blib targeting /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.blib
03 Dec 2023 00:11:33,234 INFO : Aligning data files urls in folder: /Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap
03 Dec 2023 00:11:33,235 DEBUG: Setting filePathRoot on copied run: PRM final_2023-12-01_10-41-41.sky.zip to: /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files
03 Dec 2023 00:11:33,238 DEBUG: Setting dataFileUri on copied data: PRM final_2023-12-01_10-41-41.sky.zip to: /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41.sky.zip
03 Dec 2023 00:11:33,240 DEBUG: Setting dataFileUri on copied data: PRM final.skyd to: /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/PRM final_2023-12-01_10-41-41/PRM final.skyd
03 Dec 2023 00:11:33,240 INFO : Importing files metadata.
03 Dec 2023 00:11:33,240 DEBUG: [/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap] Reading files metadata from /data/labkey/files/Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap/@files/export
03 Dec 2023 00:11:33,241 INFO :
03 Dec 2023 00:11:33,241 INFO : Experiment import completed successfully.
03 Dec 2023 00:11:33,241 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
03 Dec 2023 00:11:33,257 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
03 Dec 2023 00:11:33,257 INFO :
03 Dec 2023 00:11:33,257 INFO : Checking for library folders.
03 Dec 2023 00:11:33,258 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
03 Dec 2023 00:11:33,272 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
03 Dec 2023 00:11:33,272 INFO :
03 Dec 2023 00:11:33,272 INFO : Finishing up experiment copy.
03 Dec 2023 00:11:33,273 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/TUM Sieber Lab - ClpP Substrate Trap
03 Dec 2023 00:11:33,274 INFO : Setting version on new experiment to 1
03 Dec 2023 00:11:33,277 INFO : Updating permanent link to point to the new copy of the data.
03 Dec 2023 00:11:33,281 INFO : Removing copy permissions given to Panorama Public
03 Dec 2023 00:11:33,290 INFO : Adding read permissions to all users that are folder admins in the source folder.
03 Dec 2023 00:11:33,291 INFO : Assigning ReaderRole to stephan.sieber@tum.de
03 Dec 2023 00:11:33,291 INFO : Assigning ReaderRole to laura.eck@tum.de
03 Dec 2023 00:11:33,291 INFO : Assigning ReaderRole to nina.bach@tum.de
03 Dec 2023 00:11:33,291 INFO : Assigning PanoramaPublicSubmitterRole to laura.eck@tum.de
03 Dec 2023 00:11:33,291 INFO : Assigning PanoramaPublicSubmitterRole to stephan.sieber@tum.de
03 Dec 2023 00:11:33,298 INFO : Adding user laura.eck@tum.de to group Panorama Public Submitters
03 Dec 2023 00:11:33,302 INFO : User stephan.sieber@tum.de is already a member of group Panorama Public Submitters
03 Dec 2023 00:11:33,302 INFO : Updating the 'Raw Data' tab configuration
03 Dec 2023 00:11:33,303 INFO : Creating a reviewer account.
03 Dec 2023 00:11:33,491 INFO : Created reviewer with email: User panorama+reviewer228@proteinms.net
03 Dec 2023 00:11:33,502 INFO : Adding user panorama+reviewer228@proteinms.net to group Reviewers
03 Dec 2023 00:11:33,503 INFO : Hiding the Data Pipeline tab.
03 Dec 2023 00:11:33,507 INFO : Updating Submission. Setting copiedExperimentId to 1734
03 Dec 2023 00:11:35,014 INFO : Assigning a ProteomeXchange ID.
03 Dec 2023 00:11:35,727 INFO : Assigned ProteomeXchange ID: PXD047469
03 Dec 2023 00:11:35,728 INFO : Assigning a DOI.
03 Dec 2023 00:11:36,413 INFO : Assigned DOI: 10.6069/jhwe-2r44
03 Dec 2023 00:11:36,440 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'