Validating data for experiment Id: 1506, validation Id: 221: /Panorama Public/2022/Sainsbury Lab TSL Proteomics

Validating data for experiment Id: 1506, validation Id: 221

Sainsbury Lab TSL Proteomics - Yu et al.,2022

Job Status

Created:

2022-10-11 07:32:53

Modified:

2022-10-11 07:32:54

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Validating data for experiment Id: 1506, validation Id: 221

File Path:

/data/labkey/files/Panorama Public/2022/Sainsbury Lab TSL Proteomics - Yu et al.,2022/@files/Experiment_Validation_1586_2022-10-11_07-32-52.log

Files:

Experiment_Validation_1586_2022-10-11_07-32-52.log

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11 Oct 2022 07:32:53,856 INFO : Validating data for a ProteomeXchange submission.

11 Oct 2022 07:32:53,857 INFO : =======================================

11 Oct 2022 07:32:53,923 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'

11 Oct 2022 07:32:53,925 INFO : Validating data for experiment Id: 1506, validation Id: 221

11 Oct 2022 07:32:53,963 INFO : Validating data for 1 Skyline documents in 1 folders

11 Oct 2022 07:32:53,993 INFO : Sample file validation for Skyline document: PUB4_PRM_02_refined_for_EMBO_2022-09-13_17-31-15.sky.zip

11 Oct 2022 07:32:53,993 INFO :   Found all sample files.

11 Oct 2022 07:32:54,233 INFO : Modifications validation:

11 Oct 2022 07:32:54,233 INFO : VALID MODIFICATIONS:

11 Oct 2022 07:32:54,233 INFO : 823: Carbamidomethyl Cysteine:

11 Oct 2022 07:32:54,234 INFO :     PUB4_PRM_02_refined_for_EMBO_2022-09-13_17-31-15.sky.zip

11 Oct 2022 07:32:54,234 INFO : 824: Oxidised Met:

11 Oct 2022 07:32:54,234 INFO :     PUB4_PRM_02_refined_for_EMBO_2022-09-13_17-31-15.sky.zip

11 Oct 2022 07:32:54,234 INFO : 825: phosphoserine:

11 Oct 2022 07:32:54,234 INFO :     PUB4_PRM_02_refined_for_EMBO_2022-09-13_17-31-15.sky.zip

11 Oct 2022 07:32:54,234 INFO : 826: phosthreonine:

11 Oct 2022 07:32:54,234 INFO :     PUB4_PRM_02_refined_for_EMBO_2022-09-13_17-31-15.sky.zip

11 Oct 2022 07:32:54,234 INFO : INVALID MODIFICATIONS (No Unimod ID):

11 Oct 2022 07:32:54,237 INFO : Validating spectral library: PUB4_all.blib

11 Oct 2022 07:32:54,342 INFO : 'PUB4_all' (PUB4_all.blib) library in 1 Skyline documents was built with 21 raw files; 21 peptide Id files. Status: Missing spectrum and peptide Id  files.

11 Oct 2022 07:32:54,342 INFO :   MISSING FILES:

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde161129_02.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde161129_08.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde161129_14.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde161129_20.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde161129_26.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde170307_14.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde170307_20.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde170307_38.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde170307_44.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_01.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_02.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_03.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_04.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_05.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_06.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_07.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_08.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_09.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_10.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_11.raw

11 Oct 2022 07:32:54,342 INFO :     Spectrum File: mde171116_12.raw

11 Oct 2022 07:32:54,342 INFO :     Peptide Id File: F115635_mde161129_02.dat

11 Oct 2022 07:32:54,342 INFO :     Peptide Id File: F115643_mde161129_08.dat

11 Oct 2022 07:32:54,342 INFO :     Peptide Id File: F128659_mde161129_14.dat

11 Oct 2022 07:32:54,342 INFO :     Peptide Id File: F128665_mde161129_20.dat

11 Oct 2022 07:32:54,342 INFO :     Peptide Id File: F128683_mde161129_26.dat

11 Oct 2022 07:32:54,343 INFO :     Peptide Id File: mde170307_14_F130226.dat

11 Oct 2022 07:32:54,343 INFO :     Peptide Id File: mde170307_20_F130232.dat

11 Oct 2022 07:32:54,343 INFO :     Peptide Id File: mde170307_38_F130270.dat

11 Oct 2022 07:32:54,343 INFO :     Peptide Id File: mde170307_44_F130276.dat

11 Oct 2022 07:32:54,343 INFO :     Peptide Id File: mde171116_01_F137158.dat

11 Oct 2022 07:32:54,343 INFO :     Peptide Id File: mde171116_02_F137160.dat

11 Oct 2022 07:32:54,343 INFO :     Peptide Id File: mde171116_03_F137162.dat

11 Oct 2022 07:32:54,343 INFO :     Peptide Id File: mde171116_04_F137164.dat

11 Oct 2022 07:32:54,344 INFO :     Peptide Id File: mde171116_05_F137165.dat

11 Oct 2022 07:32:54,344 INFO :     Peptide Id File: mde171116_06_F137166.dat

11 Oct 2022 07:32:54,344 INFO :     Peptide Id File: mde171116_07_F137167.dat

11 Oct 2022 07:32:54,344 INFO :     Peptide Id File: mde171116_08_F137168.dat

11 Oct 2022 07:32:54,344 INFO :     Peptide Id File: mde171116_09_F137169.dat

11 Oct 2022 07:32:54,344 INFO :     Peptide Id File: mde171116_10_F137170.dat

11 Oct 2022 07:32:54,344 INFO :     Peptide Id File: mde171116_11_F137171.dat

11 Oct 2022 07:32:54,344 INFO :     Peptide Id File: mde171116_12_F137163.dat

11 Oct 2022 07:32:54,346 INFO : Validating spectral library: PUB4_PRM_02_refined_for_EMBO.blib

11 Oct 2022 07:32:54,895 INFO : 'PUB4_PRM_02_refined_for_EMBO' (PUB4_PRM_02_refined_for_EMBO.blib) library in 1 Skyline documents was built with 27 raw files; 27 peptide Id files. Status: Missing spectrum and peptide Id  files.

11 Oct 2022 07:32:54,895 INFO :   MISSING FILES:

11 Oct 2022 07:32:54,895 INFO :     Spectrum File: mde200121_pool_01.raw

11 Oct 2022 07:32:54,895 INFO :     Spectrum File: mde200121_pool_02.raw

11 Oct 2022 07:32:54,895 INFO :     Spectrum File: mde200121_pool_01_2.raw

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_pool_01_F147798.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_pool_02_F147800.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_pool_01_2_F148463.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_01_F148472.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_02_F148473.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_03_F148474.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_04_F148475.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_01_F148476.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_02_F148477.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_03_F148478.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_04_F148479.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_01a_F148506.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_01b_F148507.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_02a_F148509.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_02b_F148508.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_03a_F148510.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_03b_F148511.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_04a_F148512.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200121_04b_F148513.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_01a_F148514.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_01b_F148515.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_02a_F148516.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_02b_F148517.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_03a_F148519.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_03b_F148518.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_04a_F148521.dat

11 Oct 2022 07:32:54,896 INFO :     Peptide Id File: mde200214_04b_F148520.dat

11 Oct 2022 07:32:54,896 INFO : Spectral library validation complete.

11 Oct 2022 07:32:54,930 INFO : Data validation is complete. Status is IncompleteMetadata

11 Oct 2022 07:32:54,930 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'