06 Sep 2021 17:28:51,801 INFO : Copying experiment "HDL proteomics on CPROBE samples" from folder /UW - Shao Lab/CPROBE_CKD_HDL to /Panorama Public/2021/UW Shao Lab - CPROBE_CKD_HDL
06 Sep 2021 17:28:51,802 INFO : =======================================
06 Sep 2021 17:28:52,039 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
06 Sep 2021 17:28:52,039 INFO : 
06 Sep 2021 17:28:52,039 INFO : Exporting experiment.
06 Sep 2021 17:31:59,141 INFO : 
06 Sep 2021 17:31:59,141 INFO : Experiment export completed successfully.
06 Sep 2021 17:31:59,142 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
06 Sep 2021 17:31:59,245 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
06 Sep 2021 17:31:59,245 INFO : 
06 Sep 2021 17:31:59,245 INFO : Importing experiment.
06 Sep 2021 17:31:59,252 INFO : Loading folder properties (folder type, settings and active modules)
06 Sep 2021 17:31:59,356 INFO : Done importing folder properties (folder type, settings and active modules)
06 Sep 2021 17:31:59,362 INFO : Loading etl definitions
06 Sep 2021 17:31:59,365 INFO : Loading wikis
06 Sep 2021 17:31:59,367 INFO : 0 wikis imported
06 Sep 2021 17:31:59,367 INFO : Done importing wikis
06 Sep 2021 17:31:59,367 INFO : Starting to copy files
06 Sep 2021 17:34:00,278 INFO : 94 files copied, now copying 1124-191.raw
06 Sep 2021 17:34:25,509 INFO : 106 files copied, now copying CPROBE_HDL_proteins.sky.view
06 Sep 2021 17:34:27,652 INFO : 109 files copied, now copying CPROBE_15N-APOA1.sky
06 Sep 2021 17:34:27,704 INFO : Copied 112 files
06 Sep 2021 17:34:27,704 INFO : Ensuring exp.data rows exist for imported files
06 Sep 2021 17:34:28,433 INFO : Starting Sample Type and Data Class import
06 Sep 2021 17:34:28,434 INFO : No types XAR file to process.
06 Sep 2021 17:34:28,434 INFO : Finished importing Sample Types and Data Classes
06 Sep 2021 17:34:28,437 INFO : Loading xar
06 Sep 2021 17:34:30,368 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip'
06 Sep 2021 17:34:30,371 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip.Core'
06 Sep 2021 17:34:30,374 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip.Output'
06 Sep 2021 17:34:30,374 DEBUG: Protocol import complete
06 Sep 2021 17:34:30,376 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9059:HDL+proteomics+on+CPROBE+samples'
06 Sep 2021 17:34:30,376 DEBUG: Experiment/Run group import complete
06 Sep 2021 17:34:30,389 DEBUG: Protocol action set import complete
06 Sep 2021 17:34:30,408 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip'
06 Sep 2021 17:34:30,420 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9059:cbc7965d-e9ad-1039-a2b1-fea6ddf522ee'
06 Sep 2021 17:34:30,428 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9059:cbc79610-e9ad-1039-a2b1-fea6ddf522ee'
06 Sep 2021 17:34:30,429 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip.Core'
06 Sep 2021 17:34:30,433 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip.Output'
06 Sep 2021 17:34:30,434 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9059:cbc79752-e9ad-1039-a2b1-fea6ddf522ee'
06 Sep 2021 17:34:30,445 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip'
06 Sep 2021 17:34:30,452 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9059:4572b13a-f0c0-1039-a2b1-fea6ddf522ee'
06 Sep 2021 17:34:30,458 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9059:4572b126-f0c0-1039-a2b1-fea6ddf522ee'
06 Sep 2021 17:34:30,458 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip.Core'
06 Sep 2021 17:34:30,461 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9059:TargetedMS.ImportSkyZip.Output'
06 Sep 2021 17:34:30,462 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9059:4572b186-f0c0-1039-a2b1-fea6ddf522ee'
06 Sep 2021 17:34:30,464 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116416/CPROBE_HDL_proteins_2021-08-27_14-54-00/CPROBE_HDL_proteins.skyd into the system
06 Sep 2021 17:34:30,465 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116416/CPROBE_HDL_proteins_2021-08-27_14-54-00/CPROBE_HDL_proteins.skyd into the system
06 Sep 2021 17:34:30,465 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116416/CPROBE_HDL_proteins_2021-08-27_14-54-00.sky.zip into the system
06 Sep 2021 17:34:30,467 INFO : Starting import from CPROBE_HDL_proteins_2021-08-27_14-54-00.sky.zip
06 Sep 2021 17:34:30,473 INFO : Starting to import Skyline document from CPROBE_HDL_proteins_2021-08-27_14-54-00.sky.zip
06 Sep 2021 17:34:30,511 INFO : Expanding CPROBE_HDL_proteins.skyd
06 Sep 2021 17:34:31,630 INFO : Expanding CPROBE_HDL_proteins.sky.view
06 Sep 2021 17:34:31,631 INFO : Expanding CPROBE_HDL_proteins.sky
06 Sep 2021 17:34:33,226 DEBUG: Starting to load chromatogram headers
06 Sep 2021 17:34:33,238 DEBUG: Done loading chromatogram headers
06 Sep 2021 17:34:33,391 INFO : Inserting AMBP_TVAA
06 Sep 2021 17:34:33,462 INFO : 2% Done
06 Sep 2021 17:34:33,652 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:33,656 INFO : Inserting APOA1
06 Sep 2021 17:34:33,752 INFO : 4% Done
06 Sep 2021 17:34:34,156 INFO : 6% Done
06 Sep 2021 17:34:34,308 INFO : 7% Done
06 Sep 2021 17:34:34,441 DEBUG: Total peptides inserted: 4
06 Sep 2021 17:34:34,441 INFO : Inserting APOA2_EQLT
06 Sep 2021 17:34:34,473 INFO : 8% Done
06 Sep 2021 17:34:34,591 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:34,592 INFO : Inserting APOA2_SPEL
06 Sep 2021 17:34:34,639 INFO : 9% Done
06 Sep 2021 17:34:34,785 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:34,785 INFO : Inserting APOA4_LAPL
06 Sep 2021 17:34:34,822 INFO : 10% Done
06 Sep 2021 17:34:34,945 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:34,945 INFO : Inserting ApoA4_LEPY
06 Sep 2021 17:34:34,979 INFO : 11% Done
06 Sep 2021 17:34:35,097 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:35,097 INFO : Inserting APOA4_SELT
06 Sep 2021 17:34:35,169 INFO : 12% Done
06 Sep 2021 17:34:35,371 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:35,372 INFO : Inserting ApoB_SPAFTDLHLR
06 Sep 2021 17:34:35,448 INFO : 14% Done
06 Sep 2021 17:34:35,711 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:35,711 INFO : Inserting APOB_TEVI
06 Sep 2021 17:34:35,766 INFO : 16% Done
06 Sep 2021 17:34:35,921 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:35,922 INFO : Inserting APOC1_EWFS
06 Sep 2021 17:34:36,088 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:36,088 INFO : Inserting APOC2_TAAQ
06 Sep 2021 17:34:36,137 INFO : 18% Done
06 Sep 2021 17:34:36,298 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:36,298 INFO : Inserting ApoC2_TYLP
06 Sep 2021 17:34:36,337 INFO : 19% Done
06 Sep 2021 17:34:36,452 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:36,452 INFO : Inserting ApoC3_DALS
06 Sep 2021 17:34:36,744 INFO : 24% Done
06 Sep 2021 17:34:37,263 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:37,264 INFO : Inserting APOC3_GWVT
06 Sep 2021 17:34:37,318 INFO : 25% Done
06 Sep 2021 17:34:37,472 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:37,473 INFO : Inserting APOC4_AWFL
06 Sep 2021 17:34:37,582 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:37,582 INFO : Inserting APOD_NILT
06 Sep 2021 17:34:37,616 INFO : 26% Done
06 Sep 2021 17:34:37,713 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:37,713 INFO : Inserting ApoE_AATV
06 Sep 2021 17:34:37,816 INFO : 27% Done
06 Sep 2021 17:34:38,033 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:38,034 INFO : Inserting ApoE_LGAD
06 Sep 2021 17:34:38,137 INFO : 29% Done
06 Sep 2021 17:34:38,368 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:38,368 INFO : Inserting ApoE2_CLAVYQAGAR
06 Sep 2021 17:34:38,390 INFO : 30% Done
06 Sep 2021 17:34:38,481 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:38,481 INFO : Inserting ApoE4_LGADMEDVR
06 Sep 2021 17:34:38,615 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:38,615 INFO : Inserting APOF_SGVQ
06 Sep 2021 17:34:38,903 INFO : 35% Done
06 Sep 2021 17:34:39,484 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:39,484 INFO : Inserting APOF_SYDL
06 Sep 2021 17:34:39,582 INFO : 37% Done
06 Sep 2021 17:34:39,823 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:39,823 INFO : Inserting ApoL1_VAQELEEK
06 Sep 2021 17:34:39,858 INFO : 38% Done
06 Sep 2021 17:34:39,989 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:39,989 INFO : Inserting ApoL1_VTEP
06 Sep 2021 17:34:40,124 INFO : 40% Done
06 Sep 2021 17:34:40,387 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:40,388 INFO : Inserting APOM_AFLL
06 Sep 2021 17:34:40,405 INFO : 41% Done
06 Sep 2021 17:34:40,480 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:40,480 INFO : Inserting APOM_NQEA
06 Sep 2021 17:34:40,534 INFO : 42% Done
06 Sep 2021 17:34:40,687 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:40,687 INFO : Inserting B2M_SNFL
06 Sep 2021 17:34:40,881 INFO : 44% Done
06 Sep 2021 17:34:41,205 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:41,205 INFO : Inserting B2M_VNHVTLSQPK
06 Sep 2021 17:34:41,262 INFO : 46% Done
06 Sep 2021 17:34:41,431 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:41,432 INFO : Inserting CAMP_SSDA
06 Sep 2021 17:34:41,560 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:41,561 INFO : Inserting CFD_LYDV
06 Sep 2021 17:34:41,574 INFO : 47% Done
06 Sep 2021 17:34:41,635 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:41,635 INFO : Inserting CFD_RPDS
06 Sep 2021 17:34:41,699 INFO : 48% Done
06 Sep 2021 17:34:41,846 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:41,846 INFO : Inserting CLU_ELDE
06 Sep 2021 17:34:41,889 INFO : 49% Done
06 Sep 2021 17:34:41,998 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:41,998 INFO : Inserting CLU_LFDS
06 Sep 2021 17:34:42,134 INFO : 51% Done
06 Sep 2021 17:34:42,390 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:42,390 INFO : Inserting CLU_VTTV
06 Sep 2021 17:34:42,607 INFO : 54% Done
06 Sep 2021 17:34:42,937 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:42,937 INFO : Inserting CST3_ALDF
06 Sep 2021 17:34:42,985 INFO : 55% Done
06 Sep 2021 17:34:43,128 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:43,128 INFO : Inserting GC_SCES
06 Sep 2021 17:34:43,293 INFO : 57% Done
06 Sep 2021 17:34:43,588 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:43,588 INFO : Inserting HPR_NPAN
06 Sep 2021 17:34:43,613 INFO : 58% Done
06 Sep 2021 17:34:43,731 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:43,731 INFO : Inserting HPR_VGYV
06 Sep 2021 17:34:43,830 INFO : 59% Done
06 Sep 2021 17:34:44,075 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:44,075 INFO : Inserting LCAT_SSGL
06 Sep 2021 17:34:44,135 INFO : 61% Done
06 Sep 2021 17:34:44,325 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:44,325 INFO : Inserting LCAT_STEL
06 Sep 2021 17:34:44,375 INFO : 62% Done
06 Sep 2021 17:34:44,528 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:44,529 INFO : Inserting LCAT_TYIY
06 Sep 2021 17:34:44,683 INFO : 65% Done
06 Sep 2021 17:34:44,995 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:44,995 INFO : Inserting LPA_GTYS
06 Sep 2021 17:34:45,029 INFO : 66% Done
06 Sep 2021 17:34:45,143 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:45,143 INFO : Inserting LPA_NPDA
06 Sep 2021 17:34:45,228 INFO : 68% Done
06 Sep 2021 17:34:45,473 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:45,474 INFO : Inserting LPA_TPEN
06 Sep 2021 17:34:45,537 INFO : 69% Done
06 Sep 2021 17:34:45,739 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:45,740 INFO : Inserting PON1_EVQP
06 Sep 2021 17:34:45,855 INFO : 71% Done
06 Sep 2021 17:34:46,110 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:46,110 INFO : Inserting PON1_IFFY
06 Sep 2021 17:34:46,538 INFO : 77% Done
06 Sep 2021 17:34:47,285 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:47,285 INFO : Inserting PON1_IQNI
06 Sep 2021 17:34:47,331 INFO : 78% Done
06 Sep 2021 17:34:47,487 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:47,487 INFO : Inserting PON3_ILIG
06 Sep 2021 17:34:47,519 INFO : 79% Done
06 Sep 2021 17:34:47,643 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:47,643 INFO : Inserting PON3_STVE
06 Sep 2021 17:34:47,660 INFO : 80% Done
06 Sep 2021 17:34:47,748 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:47,748 INFO : Inserting RBP4_GNDD
06 Sep 2021 17:34:47,821 INFO : 82% Done
06 Sep 2021 17:34:48,030 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:48,030 INFO : Inserting RBP4_YWGV
06 Sep 2021 17:34:48,064 INFO : 83% Done
06 Sep 2021 17:34:48,201 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:48,201 INFO : Inserting SAA1/2_SFFS
06 Sep 2021 17:34:48,252 INFO : 85% Done
06 Sep 2021 17:34:48,440 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:48,440 INFO : Inserting SAA1_FFGH
06 Sep 2021 17:34:48,580 INFO : 88% Done
06 Sep 2021 17:34:48,912 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:48,913 INFO : Inserting SAA4_AYWD
06 Sep 2021 17:34:49,038 INFO : 91% Done
06 Sep 2021 17:34:49,334 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:49,334 INFO : Inserting SAA4_FRPD
06 Sep 2021 17:34:49,368 INFO : 92% Done
06 Sep 2021 17:34:49,512 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:49,512 INFO : Inserting SAA4_GPGG
06 Sep 2021 17:34:49,540 INFO : 93% Done
06 Sep 2021 17:34:49,651 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:49,651 INFO : Inserting SERPINA1_LSIT
06 Sep 2021 17:34:49,688 INFO : 94% Done
06 Sep 2021 17:34:49,840 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:49,841 INFO : Inserting SERPINA1_SVLG
06 Sep 2021 17:34:49,867 INFO : 95% Done
06 Sep 2021 17:34:49,972 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:49,972 INFO : Inserting TTR_AADD
06 Sep 2021 17:34:50,013 INFO : 96% Done
06 Sep 2021 17:34:50,172 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:50,173 INFO : Inserting VTN_SIAQ
06 Sep 2021 17:34:50,232 INFO : 98% Done
06 Sep 2021 17:34:50,439 DEBUG: Total peptides inserted: 1
06 Sep 2021 17:34:50,440 INFO : Done parsing Skyline document.
06 Sep 2021 17:34:50,441 INFO : Creating and populating temp tables for Proportion values
06 Sep 2021 17:34:50,489 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
06 Sep 2021 17:34:50,741 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
06 Sep 2021 17:34:50,914 INFO : Cleaning up temp tables
06 Sep 2021 17:34:51,176 INFO : Completed import of Skyline document from CPROBE_HDL_proteins_2021-08-27_14-54-00.sky.zip
06 Sep 2021 17:34:51,180 INFO : 100% Done
06 Sep 2021 17:34:51,184 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116416/CPROBE_HDL_proteins_2021-08-27_14-54-00.sky.zip into the system
06 Sep 2021 17:34:51,184 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116888/CPROBE_15N-APOA1_2021-09-05_14-52-13/CPROBE_15N-APOA1.skyd into the system
06 Sep 2021 17:34:51,185 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116888/CPROBE_15N-APOA1_2021-09-05_14-52-13/CPROBE_15N-APOA1.skyd into the system
06 Sep 2021 17:34:51,185 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116888/CPROBE_15N-APOA1_2021-09-05_14-52-13.sky.zip into the system
06 Sep 2021 17:34:51,186 INFO : Starting import from CPROBE_15N-APOA1_2021-09-05_14-52-13.sky.zip
06 Sep 2021 17:34:51,190 INFO : Starting to import Skyline document from CPROBE_15N-APOA1_2021-09-05_14-52-13.sky.zip
06 Sep 2021 17:34:51,194 INFO : Expanding CPROBE_15N-APOA1.skyd
06 Sep 2021 17:34:51,306 INFO : Expanding CPROBE_15N-APOA1.sky.view
06 Sep 2021 17:34:51,306 INFO : Expanding CPROBE_15N-APOA1.sky
06 Sep 2021 17:34:51,327 INFO : 3% Done
06 Sep 2021 17:34:51,476 DEBUG: Starting to load chromatogram headers
06 Sep 2021 17:34:51,478 DEBUG: Done loading chromatogram headers
06 Sep 2021 17:34:51,655 INFO : Inserting APOA1
06 Sep 2021 17:34:51,808 INFO : 35% Done
06 Sep 2021 17:34:52,413 INFO : 55% Done
06 Sep 2021 17:34:52,799 INFO : 74% Done
06 Sep 2021 17:34:53,212 INFO : 98% Done
06 Sep 2021 17:34:53,624 DEBUG: Total peptides inserted: 4
06 Sep 2021 17:34:53,625 INFO : Done parsing Skyline document.
06 Sep 2021 17:34:53,627 INFO : Creating and populating temp tables for Proportion values
06 Sep 2021 17:34:53,641 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
06 Sep 2021 17:34:53,670 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
06 Sep 2021 17:34:53,681 INFO : Cleaning up temp tables
06 Sep 2021 17:34:53,905 INFO : Completed import of Skyline document from CPROBE_15N-APOA1_2021-09-05_14-52-13.sky.zip
06 Sep 2021 17:34:53,908 INFO : 100% Done
06 Sep 2021 17:34:53,913 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116888/CPROBE_15N-APOA1_2021-09-05_14-52-13.sky.zip into the system
06 Sep 2021 17:34:53,924 INFO : Done importing xar
06 Sep 2021 17:34:53,926 INFO : Loading pages and webpart properties
06 Sep 2021 17:34:54,004 INFO : Done importing pages and webpart properties
06 Sep 2021 17:34:54,005 INFO : 
06 Sep 2021 17:34:54,005 INFO : Experiment import completed successfully.
06 Sep 2021 17:34:54,005 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
06 Sep 2021 17:34:54,055 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
06 Sep 2021 17:34:54,055 INFO : 
06 Sep 2021 17:34:54,056 INFO : Finishing up experiment copy.
06 Sep 2021 17:34:54,058 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
06 Sep 2021 17:34:54,061 INFO : Assigning a ProteomeXchange ID.
06 Sep 2021 17:34:55,229 INFO : Assigning a DOI.
06 Sep 2021 17:34:56,414 INFO : Assigned DOI: 10.6069/6kqh-w345
06 Sep 2021 17:34:56,419 INFO : Updating access URL to point to the new copy of the data.
06 Sep 2021 17:34:56,428 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
06 Sep 2021 17:34:56,429 INFO : Removing copy permissions given to journal.
06 Sep 2021 17:34:56,442 INFO : Adding read permissions to all users that are folder admins in the source container.
06 Sep 2021 17:34:56,451 INFO : Setting the TargetedMS folder type to 'Experimental Data'
06 Sep 2021 17:34:56,456 INFO : Updating the 'Raw Data' tab configuration
06 Sep 2021 17:34:56,459 INFO : Updating dataFileUrls for run CPROBE_HDL_proteins_2021-08-27_14-54-00.sky.zip; targetedms run ID 119443
06 Sep 2021 17:34:56,459 INFO : Updating dataFileUrl...
06 Sep 2021 17:34:56,460 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116416/CPROBE_HDL_proteins_2021-08-27_14-54-00.sky.zip
06 Sep 2021 17:34:56,461 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL/@files/CPROBE_HDL_proteins_2021-08-27_14-54-00.sky.zip
06 Sep 2021 17:34:56,465 INFO : Updating dataFileUrl...
06 Sep 2021 17:34:56,465 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116416/CPROBE_HDL_proteins_2021-08-27_14-54-00/CPROBE_HDL_proteins.skyd
06 Sep 2021 17:34:56,466 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL/@files/CPROBE_HDL_proteins_2021-08-27_14-54-00/CPROBE_HDL_proteins.skyd
06 Sep 2021 17:34:56,472 INFO : Updating dataFileUrls for run CPROBE_15N-APOA1_2021-09-05_14-52-13.sky.zip; targetedms run ID 119444
06 Sep 2021 17:34:56,473 INFO : Updating dataFileUrl...
06 Sep 2021 17:34:56,473 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116888/CPROBE_15N-APOA1_2021-09-05_14-52-13/CPROBE_15N-APOA1.skyd
06 Sep 2021 17:34:56,473 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL/@files/CPROBE_15N-APOA1_2021-09-05_14-52-13/CPROBE_15N-APOA1.skyd
06 Sep 2021 17:34:56,475 INFO : Updating dataFileUrl...
06 Sep 2021 17:34:56,475 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL_595b4681-f19f-1039-a2b1-fea6ddf522ee/_temp__2021-09-06_17-28-51/export/xar/experiments_and_runs.xar.exploded/Run116888/CPROBE_15N-APOA1_2021-09-05_14-52-13.sky.zip
06 Sep 2021 17:34:56,475 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/UW%20Shao%20Lab%20-%20CPROBE_CKD_HDL/@files/CPROBE_15N-APOA1_2021-09-05_14-52-13.sky.zip
06 Sep 2021 17:34:56,478 INFO : Creating a reviewer account.
06 Sep 2021 17:34:56,733 INFO : Created reviewer with email: User panorama+reviewer65@proteinms.net
06 Sep 2021 17:34:56,742 INFO : Hiding the Data Pipeline tab.
06 Sep 2021 17:34:56,897 INFO : Emailing submitter.
06 Sep 2021 17:34:57,101 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'