17 Nov 2021 08:51:34,061 INFO : Copying experiment "Absolute quantification of influenza virus proteins" from folder /U of Magdeburg - Benndorf Lab/Absolute quantification of influenza virus proteins-JK to /Panorama Public/2021/U of Magdeburg Benndorf Lab - Absolute quantification of influenza virus proteins-JK
17 Nov 2021 08:51:34,061 INFO : =======================================
17 Nov 2021 08:51:34,102 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
17 Nov 2021 08:51:34,102 INFO : 
17 Nov 2021 08:51:34,102 INFO : Exporting experiment.
17 Nov 2021 09:02:37,551 INFO : 
17 Nov 2021 09:02:37,551 INFO : Experiment export completed successfully.
17 Nov 2021 09:02:37,551 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
17 Nov 2021 09:02:37,578 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
17 Nov 2021 09:02:37,578 INFO : 
17 Nov 2021 09:02:37,578 INFO : Importing experiment.
17 Nov 2021 09:02:37,582 INFO : Loading folder properties (folder type, settings and active modules)
17 Nov 2021 09:02:37,788 INFO : Done importing folder properties (folder type, settings and active modules)
17 Nov 2021 09:02:37,791 INFO : Loading etl definitions
17 Nov 2021 09:02:37,793 INFO : Loading wikis
17 Nov 2021 09:02:37,880 INFO : 0 wikis imported
17 Nov 2021 09:02:37,880 INFO : Done importing wikis
17 Nov 2021 09:02:37,880 INFO : Starting to copy files
17 Nov 2021 09:02:37,881 INFO : Copied 0 files
17 Nov 2021 09:02:37,881 INFO : Ensuring exp.data rows exist for imported files
17 Nov 2021 09:02:37,896 INFO : Starting Sample Type and Data Class import
17 Nov 2021 09:02:37,896 INFO : No types XAR file to process.
17 Nov 2021 09:02:37,896 INFO : Finished importing Sample Types and Data Classes
17 Nov 2021 09:02:37,898 INFO : Loading xar
17 Nov 2021 09:02:37,903 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9344:Absolute+quantification+of+influenza+virus+proteins'
17 Nov 2021 09:02:37,903 DEBUG: Experiment/Run group import complete
17 Nov 2021 09:02:37,904 INFO : Done importing xar
17 Nov 2021 09:02:37,906 INFO : Loading pages and webpart properties
17 Nov 2021 09:02:38,021 INFO : Done importing pages and webpart properties
17 Nov 2021 09:02:38,023 INFO : Loading subfolders and container tabs
17 Nov 2021 09:02:38,062 INFO : New container created with inherited permissions for Cell Pellet
17 Nov 2021 09:02:38,062 INFO : Loading folder archive for Cell Pellet
17 Nov 2021 09:02:38,064 INFO : Loading folder properties (folder type, settings and active modules)
17 Nov 2021 09:02:38,110 INFO : Done importing folder properties (folder type, settings and active modules)
17 Nov 2021 09:02:38,111 INFO : Loading etl definitions
17 Nov 2021 09:02:38,113 INFO : Loading wikis
17 Nov 2021 09:02:38,114 INFO : 0 wikis imported
17 Nov 2021 09:02:38,114 INFO : Done importing wikis
17 Nov 2021 09:02:38,114 INFO : Starting to copy files
17 Nov 2021 09:04:42,415 INFO : 29 files copied, now copying Abschlussexp_S3_CP_11_GB4_01_4268.d.zip
17 Nov 2021 09:06:47,376 INFO : 47 files copied, now copying Abschlussexp_S2_CP_10_GE7_01_4237.d.zip
17 Nov 2021 09:08:50,532 INFO : 65 files copied, now copying Abschlussexp_Mock_CP_2_GD7_01_4290.d.zip
17 Nov 2021 09:09:06,470 INFO : 67 files copied, now copying 20211102_JK_Cell Pellet_S1.sky
17 Nov 2021 09:09:07,029 INFO : 70 files copied, now copying 20211102_JK_Cell Pellet_S2.sky.view
17 Nov 2021 09:09:07,247 INFO : 73 files copied, now copying 20190622_PL_Mock_CP.skyd
17 Nov 2021 09:09:07,325 INFO : Copied 76 files
17 Nov 2021 09:09:07,325 INFO : Ensuring exp.data rows exist for imported files
17 Nov 2021 09:09:07,657 INFO : Starting Sample Type and Data Class import
17 Nov 2021 09:09:07,657 INFO : No types XAR file to process.
17 Nov 2021 09:09:07,657 INFO : Finished importing Sample Types and Data Classes
17 Nov 2021 09:09:07,659 INFO : Loading xar
17 Nov 2021 09:09:07,919 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip'
17 Nov 2021 09:09:07,921 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:09:07,922 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:09:07,922 DEBUG: Protocol import complete
17 Nov 2021 09:09:07,931 DEBUG: Protocol action set import complete
17 Nov 2021 09:09:07,938 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip'
17 Nov 2021 09:09:07,945 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9345:5bb39b22-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,948 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9345:5bb39b0d-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,948 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:09:07,950 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:09:07,951 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9345:5bb39b38-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,955 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip'
17 Nov 2021 09:09:07,959 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9345:5bb39981-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,962 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9345:5bb3996a-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,962 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:09:07,964 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:09:07,964 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9345:5bb39992-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,968 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip'
17 Nov 2021 09:09:07,972 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9345:84d2a38c-1e1c-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,975 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9345:84d2a37d-1e1c-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,975 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:09:07,977 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:09:07,977 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9345:84d2a3ae-1e1c-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,981 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip'
17 Nov 2021 09:09:07,985 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9345:5bb38fdd-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,988 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9345:5bb38fcd-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,988 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:09:07,990 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9345:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:09:07,990 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9345:5bb38ff0-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:09:07,992 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120833/20211102_JK_Cell%20Pellet_S3_2021-11-02_08-59-23/20211102_JK_Cell%20Pellet_S3.skyd into the system
17 Nov 2021 09:09:07,992 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120833/20211102_JK_Cell%20Pellet_S3_2021-11-02_08-59-23/20211102_JK_Cell%20Pellet_S3.skyd into the system
17 Nov 2021 09:09:07,992 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120833/20211102_JK_Cell%20Pellet_S3_2021-11-02_08-59-23.sky.zip into the system
17 Nov 2021 09:09:07,993 INFO : Starting import from 20211102_JK_Cell Pellet_S3_2021-11-02_08-59-23.sky.zip
17 Nov 2021 09:09:07,998 INFO : Starting to import Skyline document from 20211102_JK_Cell Pellet_S3_2021-11-02_08-59-23.sky.zip
17 Nov 2021 09:09:08,000 INFO : Expanding 20211102_JK_Cell Pellet_S3.skyd
17 Nov 2021 09:09:08,035 INFO : Expanding 20211102_JK_Cell Pellet_S3.sky.view
17 Nov 2021 09:09:08,035 INFO : Expanding 20211102_JK_Cell Pellet_S3.sky
17 Nov 2021 09:09:08,040 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
17 Nov 2021 09:09:08,049 INFO : 2% Done
17 Nov 2021 09:09:08,071 DEBUG: Starting to load chromatogram headers
17 Nov 2021 09:09:08,072 DEBUG: Done loading chromatogram headers
17 Nov 2021 09:09:08,142 INFO : Inserting sp|P03452|HEMA_I34A1
17 Nov 2021 09:09:08,153 INFO : 8% Done
17 Nov 2021 09:09:08,228 INFO : 16% Done
17 Nov 2021 09:09:08,292 INFO : 22% Done
17 Nov 2021 09:09:08,340 DEBUG: Total peptides inserted: 3
17 Nov 2021 09:09:08,346 INFO : Inserting sp|P03485|M1_I34A1
17 Nov 2021 09:09:08,351 INFO : 26% Done
17 Nov 2021 09:09:08,392 INFO : 34% Done
17 Nov 2021 09:09:08,451 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:09:08,451 INFO : Inserting peptides1
17 Nov 2021 09:09:08,457 INFO : 40% Done
17 Nov 2021 09:09:08,496 DEBUG: Total peptides inserted: 1
17 Nov 2021 09:09:08,499 INFO : Inserting sp|P03468|NRAM_I34A1
17 Nov 2021 09:09:08,504 INFO : 44% Done
17 Nov 2021 09:09:08,539 INFO : 49% Done
17 Nov 2021 09:09:08,571 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:09:08,574 INFO : Inserting sp|P03466|NCAP_I34A1
17 Nov 2021 09:09:08,579 INFO : 55% Done
17 Nov 2021 09:09:08,624 INFO : 61% Done
17 Nov 2021 09:09:08,673 INFO : 74% Done
17 Nov 2021 09:09:08,756 INFO : 80% Done
17 Nov 2021 09:09:08,797 DEBUG: Total peptides inserted: 4
17 Nov 2021 09:09:08,798 INFO : Done parsing Skyline document.
17 Nov 2021 09:09:08,799 INFO : Calculating fold changes
17 Nov 2021 09:09:08,800 DEBUG: Calculating fold change for group comparison a vs b, 1 of 1
17 Nov 2021 09:09:09,002 INFO : 98% Done
17 Nov 2021 09:09:09,002 INFO : Done calculating fold changes.
17 Nov 2021 09:09:09,004 INFO : Creating and populating temp tables for Proportion values
17 Nov 2021 09:09:09,025 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Nov 2021 09:09:09,041 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Nov 2021 09:09:09,047 INFO : Cleaning up temp tables
17 Nov 2021 09:09:09,284 INFO : Completed import of Skyline document from 20211102_JK_Cell Pellet_S3_2021-11-02_08-59-23.sky.zip
17 Nov 2021 09:09:09,287 INFO : 100% Done
17 Nov 2021 09:09:09,293 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120833/20211102_JK_Cell%20Pellet_S3_2021-11-02_08-59-23.sky.zip into the system
17 Nov 2021 09:09:09,294 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120832/20211102_JK_Cell%20Pellet_S2_2021-11-02_08-58-38/20211102_JK_Cell%20Pellet_S2.skyd into the system
17 Nov 2021 09:09:09,294 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120832/20211102_JK_Cell%20Pellet_S2_2021-11-02_08-58-38/20211102_JK_Cell%20Pellet_S2.skyd into the system
17 Nov 2021 09:09:09,294 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120832/20211102_JK_Cell%20Pellet_S2_2021-11-02_08-58-38.sky.zip into the system
17 Nov 2021 09:09:09,296 INFO : Starting import from 20211102_JK_Cell Pellet_S2_2021-11-02_08-58-38.sky.zip
17 Nov 2021 09:09:09,299 INFO : Starting to import Skyline document from 20211102_JK_Cell Pellet_S2_2021-11-02_08-58-38.sky.zip
17 Nov 2021 09:09:09,301 INFO : Expanding 20211102_JK_Cell Pellet_S2.skyd
17 Nov 2021 09:09:09,334 INFO : Expanding 20211102_JK_Cell Pellet_S2.sky.view
17 Nov 2021 09:09:09,335 INFO : Expanding 20211102_JK_Cell Pellet_S2.sky
17 Nov 2021 09:09:09,340 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
17 Nov 2021 09:09:09,345 INFO : 2% Done
17 Nov 2021 09:09:09,365 DEBUG: Starting to load chromatogram headers
17 Nov 2021 09:09:09,365 DEBUG: Done loading chromatogram headers
17 Nov 2021 09:09:09,419 INFO : Inserting sp|P03452|HEMA_I34A1
17 Nov 2021 09:09:09,428 INFO : 9% Done
17 Nov 2021 09:09:09,488 INFO : 15% Done
17 Nov 2021 09:09:09,546 INFO : 22% Done
17 Nov 2021 09:09:09,591 DEBUG: Total peptides inserted: 3
17 Nov 2021 09:09:09,594 INFO : Inserting sp|P03485|M1_I34A1
17 Nov 2021 09:09:09,598 INFO : 26% Done
17 Nov 2021 09:09:09,642 INFO : 35% Done
17 Nov 2021 09:09:09,698 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:09:09,698 INFO : Inserting peptides1
17 Nov 2021 09:09:09,703 INFO : 40% Done
17 Nov 2021 09:09:09,746 DEBUG: Total peptides inserted: 1
17 Nov 2021 09:09:09,748 INFO : Inserting sp|P03468|NRAM_I34A1
17 Nov 2021 09:09:09,753 INFO : 45% Done
17 Nov 2021 09:09:09,789 INFO : 49% Done
17 Nov 2021 09:09:09,821 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:09:09,823 INFO : 50% Done
17 Nov 2021 09:09:09,825 INFO : Inserting sp|P03466|NCAP_I34A1
17 Nov 2021 09:09:09,830 INFO : 56% Done
17 Nov 2021 09:09:09,877 INFO : 62% Done
17 Nov 2021 09:09:09,927 INFO : 74% Done
17 Nov 2021 09:09:10,008 INFO : 80% Done
17 Nov 2021 09:09:10,049 DEBUG: Total peptides inserted: 4
17 Nov 2021 09:09:10,050 INFO : Done parsing Skyline document.
17 Nov 2021 09:09:10,051 INFO : Calculating fold changes
17 Nov 2021 09:09:10,051 DEBUG: Calculating fold change for group comparison a vs b, 1 of 1
17 Nov 2021 09:09:10,218 INFO : 98% Done
17 Nov 2021 09:09:10,218 INFO : Done calculating fold changes.
17 Nov 2021 09:09:10,219 INFO : Creating and populating temp tables for Proportion values
17 Nov 2021 09:09:10,235 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Nov 2021 09:09:10,250 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Nov 2021 09:09:10,254 INFO : Cleaning up temp tables
17 Nov 2021 09:09:10,478 INFO : Completed import of Skyline document from 20211102_JK_Cell Pellet_S2_2021-11-02_08-58-38.sky.zip
17 Nov 2021 09:09:10,481 INFO : 100% Done
17 Nov 2021 09:09:10,485 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120832/20211102_JK_Cell%20Pellet_S2_2021-11-02_08-58-38.sky.zip into the system
17 Nov 2021 09:09:10,485 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120872/20190622_PL_Mock_CP_2021-11-02_16-10-02/20190622_PL_Mock_CP.skyd into the system
17 Nov 2021 09:09:10,485 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120872/20190622_PL_Mock_CP_2021-11-02_16-10-02/20190622_PL_Mock_CP.skyd into the system
17 Nov 2021 09:09:10,485 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120872/20190622_PL_Mock_CP_2021-11-02_16-10-02.sky.zip into the system
17 Nov 2021 09:09:10,486 INFO : Starting import from 20190622_PL_Mock_CP_2021-11-02_16-10-02.sky.zip
17 Nov 2021 09:09:10,488 INFO : Starting to import Skyline document from 20190622_PL_Mock_CP_2021-11-02_16-10-02.sky.zip
17 Nov 2021 09:09:10,490 INFO : Expanding 20190622_PL_Mock_CP.skyd
17 Nov 2021 09:09:10,524 INFO : Expanding 20190622_PL_Mock_CP.sky.view
17 Nov 2021 09:09:10,524 INFO : Expanding 20190622_PL_Mock_CP.sky
17 Nov 2021 09:09:10,529 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
17 Nov 2021 09:09:10,532 INFO : 2% Done
17 Nov 2021 09:09:10,554 DEBUG: Starting to load chromatogram headers
17 Nov 2021 09:09:10,555 DEBUG: Done loading chromatogram headers
17 Nov 2021 09:09:10,595 INFO : Inserting sp|P03452|HEMA_I34A1
17 Nov 2021 09:09:10,602 INFO : 9% Done
17 Nov 2021 09:09:10,664 INFO : 14% Done
17 Nov 2021 09:09:10,717 INFO : 21% Done
17 Nov 2021 09:09:10,776 DEBUG: Total peptides inserted: 3
17 Nov 2021 09:09:10,778 INFO : Inserting sp|P03485|M1_I34A1
17 Nov 2021 09:09:10,782 INFO : 26% Done
17 Nov 2021 09:09:10,827 INFO : 31% Done
17 Nov 2021 09:09:10,874 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:09:10,874 INFO : Inserting peptides1
17 Nov 2021 09:09:10,884 INFO : 42% Done
17 Nov 2021 09:09:10,968 DEBUG: Total peptides inserted: 1
17 Nov 2021 09:09:10,970 INFO : Inserting sp|P03468|NRAM_I34A1
17 Nov 2021 09:09:10,974 INFO : 48% Done
17 Nov 2021 09:09:11,025 INFO : 53% Done
17 Nov 2021 09:09:11,062 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:09:11,064 INFO : Inserting sp|P03466|NCAP_I34A1
17 Nov 2021 09:09:11,069 INFO : 58% Done
17 Nov 2021 09:09:11,122 INFO : 65% Done
17 Nov 2021 09:09:11,188 INFO : 75% Done
17 Nov 2021 09:09:11,269 INFO : 80% Done
17 Nov 2021 09:09:11,313 DEBUG: Total peptides inserted: 4
17 Nov 2021 09:09:11,313 INFO : Done parsing Skyline document.
17 Nov 2021 09:09:11,315 INFO : Calculating fold changes
17 Nov 2021 09:09:11,315 DEBUG: Calculating fold change for group comparison a vs b, 1 of 1
17 Nov 2021 09:09:11,548 INFO : 98% Done
17 Nov 2021 09:09:11,548 INFO : Done calculating fold changes.
17 Nov 2021 09:09:11,548 INFO : Creating and populating temp tables for Proportion values
17 Nov 2021 09:09:11,563 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Nov 2021 09:09:11,577 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Nov 2021 09:09:11,581 INFO : Cleaning up temp tables
17 Nov 2021 09:09:11,807 INFO : Completed import of Skyline document from 20190622_PL_Mock_CP_2021-11-02_16-10-02.sky.zip
17 Nov 2021 09:09:11,809 INFO : 100% Done
17 Nov 2021 09:09:11,813 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120872/20190622_PL_Mock_CP_2021-11-02_16-10-02.sky.zip into the system
17 Nov 2021 09:09:11,813 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120831/20211102_JK_Cell%20Pellet_S1_2021-11-02_08-56-47/20211102_JK_Cell%20Pellet_S1.skyd into the system
17 Nov 2021 09:09:11,814 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120831/20211102_JK_Cell%20Pellet_S1_2021-11-02_08-56-47/20211102_JK_Cell%20Pellet_S1.skyd into the system
17 Nov 2021 09:09:11,814 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120831/20211102_JK_Cell%20Pellet_S1_2021-11-02_08-56-47.sky.zip into the system
17 Nov 2021 09:09:11,815 INFO : Starting import from 20211102_JK_Cell Pellet_S1_2021-11-02_08-56-47.sky.zip
17 Nov 2021 09:09:11,818 INFO : Starting to import Skyline document from 20211102_JK_Cell Pellet_S1_2021-11-02_08-56-47.sky.zip
17 Nov 2021 09:09:11,820 INFO : Expanding 20211102_JK_Cell Pellet_S1.skyd
17 Nov 2021 09:09:11,851 INFO : Expanding 20211102_JK_Cell Pellet_S1.sky.view
17 Nov 2021 09:09:11,852 INFO : Expanding 20211102_JK_Cell Pellet_S1.sky
17 Nov 2021 09:09:11,856 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
17 Nov 2021 09:09:11,861 INFO : 2% Done
17 Nov 2021 09:09:11,887 DEBUG: Starting to load chromatogram headers
17 Nov 2021 09:09:11,887 DEBUG: Done loading chromatogram headers
17 Nov 2021 09:09:11,935 INFO : Inserting sp|P03452|HEMA_I34A1
17 Nov 2021 09:09:11,941 INFO : 9% Done
17 Nov 2021 09:09:11,996 INFO : 14% Done
17 Nov 2021 09:09:12,039 INFO : 21% Done
17 Nov 2021 09:09:12,085 DEBUG: Total peptides inserted: 3
17 Nov 2021 09:09:12,087 INFO : Inserting sp|P03485|M1_I34A1
17 Nov 2021 09:09:12,091 INFO : 26% Done
17 Nov 2021 09:09:12,127 INFO : 32% Done
17 Nov 2021 09:09:12,168 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:09:12,168 INFO : Inserting peptides1
17 Nov 2021 09:09:12,174 INFO : 38% Done
17 Nov 2021 09:09:12,214 DEBUG: Total peptides inserted: 1
17 Nov 2021 09:09:12,216 INFO : Inserting sp|P03468|NRAM_I34A1
17 Nov 2021 09:09:12,221 INFO : 44% Done
17 Nov 2021 09:09:12,259 INFO : 49% Done
17 Nov 2021 09:09:12,289 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:09:12,291 INFO : Inserting sp|P03466|NCAP_I34A1
17 Nov 2021 09:09:12,295 INFO : 55% Done
17 Nov 2021 09:09:12,341 INFO : 62% Done
17 Nov 2021 09:09:12,391 INFO : 76% Done
17 Nov 2021 09:09:12,471 INFO : 80% Done
17 Nov 2021 09:09:12,500 DEBUG: Total peptides inserted: 4
17 Nov 2021 09:09:12,501 INFO : Done parsing Skyline document.
17 Nov 2021 09:09:12,503 INFO : Calculating fold changes
17 Nov 2021 09:09:12,503 DEBUG: Calculating fold change for group comparison a vs b, 1 of 1
17 Nov 2021 09:09:12,670 INFO : 98% Done
17 Nov 2021 09:09:12,670 INFO : Done calculating fold changes.
17 Nov 2021 09:09:12,671 INFO : Creating and populating temp tables for Proportion values
17 Nov 2021 09:09:12,689 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Nov 2021 09:09:12,704 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Nov 2021 09:09:12,710 INFO : Cleaning up temp tables
17 Nov 2021 09:09:12,928 INFO : Completed import of Skyline document from 20211102_JK_Cell Pellet_S1_2021-11-02_08-56-47.sky.zip
17 Nov 2021 09:09:12,931 INFO : 100% Done
17 Nov 2021 09:09:12,936 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120831/20211102_JK_Cell%20Pellet_S1_2021-11-02_08-56-47.sky.zip into the system
17 Nov 2021 09:09:12,950 INFO : Done importing xar
17 Nov 2021 09:09:12,952 INFO : Loading pages and webpart properties
17 Nov 2021 09:09:13,016 INFO : Done importing pages and webpart properties
17 Nov 2021 09:09:13,016 INFO : Done importing folder archive for Cell Pellet
17 Nov 2021 09:09:13,054 INFO : New container created with inherited permissions for Supernatant
17 Nov 2021 09:09:13,054 INFO : Loading folder archive for Supernatant
17 Nov 2021 09:09:13,056 INFO : Loading folder properties (folder type, settings and active modules)
17 Nov 2021 09:09:13,097 INFO : Done importing folder properties (folder type, settings and active modules)
17 Nov 2021 09:09:13,098 INFO : Loading etl definitions
17 Nov 2021 09:09:13,099 INFO : Loading wikis
17 Nov 2021 09:09:13,100 INFO : 0 wikis imported
17 Nov 2021 09:09:13,100 INFO : Done importing wikis
17 Nov 2021 09:09:13,101 INFO : Starting to copy files
17 Nov 2021 09:11:14,122 INFO : 36 files copied, now copying Abschlussexp_S2_SN_13_RB8_01_4255.d.zip
17 Nov 2021 09:13:18,316 INFO : 63 files copied, now copying Abschlussexp_S3_SN_10_GD1_01_4283.d.zip
17 Nov 2021 09:13:21,643 INFO : 64 files copied, now copying 20190622_PL_Mock_SN.sky
17 Nov 2021 09:13:24,734 INFO : 67 files copied, now copying 20211102_JK_Supernatant_S3.sky.view
17 Nov 2021 09:13:25,317 INFO : 70 files copied, now copying 20211102_JK_Supernatant_S2.sky
17 Nov 2021 09:13:25,374 INFO : 73 files copied, now copying 20211102_JK_Supernatant_S1.sky.view
17 Nov 2021 09:13:25,402 INFO : Copied 76 files
17 Nov 2021 09:13:25,402 INFO : Ensuring exp.data rows exist for imported files
17 Nov 2021 09:13:25,687 INFO : Starting Sample Type and Data Class import
17 Nov 2021 09:13:25,687 INFO : No types XAR file to process.
17 Nov 2021 09:13:25,687 INFO : Finished importing Sample Types and Data Classes
17 Nov 2021 09:13:25,688 INFO : Loading xar
17 Nov 2021 09:13:25,911 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip'
17 Nov 2021 09:13:25,913 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:13:25,914 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:13:25,914 DEBUG: Protocol import complete
17 Nov 2021 09:13:25,923 DEBUG: Protocol action set import complete
17 Nov 2021 09:13:25,931 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip'
17 Nov 2021 09:13:25,937 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9346:5bb3a00d-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,941 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9346:5bb39ffb-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,941 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:13:25,943 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:13:25,944 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9346:5bb3a028-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,947 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip'
17 Nov 2021 09:13:25,951 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9346:5bb39c83-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,955 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9346:5bb39c69-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,955 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:13:25,956 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:13:25,957 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9346:5bb39e5b-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,960 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip'
17 Nov 2021 09:13:25,964 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9346:5bb3a10e-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,967 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9346:5bb3a100-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,967 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:13:25,969 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:13:25,969 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9346:5bb3a128-1de0-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,973 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip'
17 Nov 2021 09:13:25,977 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9346:84d2a7a5-1e1c-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,980 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9346:84d2a790-1e1c-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,980 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Core'
17 Nov 2021 09:13:25,981 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9346:TargetedMS.ImportSkyZip.Output'
17 Nov 2021 09:13:25,982 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9346:84d2a7d1-1e1c-103a-b54f-fea6ddf5779e'
17 Nov 2021 09:13:25,984 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120835/20211102_JK_Supernatant_S2_2021-11-02_09-01-22/20211102_JK_Supernatant_S2.skyd into the system
17 Nov 2021 09:13:25,984 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120835/20211102_JK_Supernatant_S2_2021-11-02_09-01-22/20211102_JK_Supernatant_S2.skyd into the system
17 Nov 2021 09:13:25,984 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120835/20211102_JK_Supernatant_S2_2021-11-02_09-01-22.sky.zip into the system
17 Nov 2021 09:13:25,986 INFO : Starting import from 20211102_JK_Supernatant_S2_2021-11-02_09-01-22.sky.zip
17 Nov 2021 09:13:25,989 INFO : Starting to import Skyline document from 20211102_JK_Supernatant_S2_2021-11-02_09-01-22.sky.zip
17 Nov 2021 09:13:25,990 INFO : Expanding 20211102_JK_Supernatant_S2.skyd
17 Nov 2021 09:13:26,021 INFO : Expanding 20211102_JK_Supernatant_S2.sky.view
17 Nov 2021 09:13:26,021 INFO : Expanding 20211102_JK_Supernatant_S2.sky
17 Nov 2021 09:13:26,025 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
17 Nov 2021 09:13:26,031 INFO : 2% Done
17 Nov 2021 09:13:26,059 DEBUG: Starting to load chromatogram headers
17 Nov 2021 09:13:26,059 DEBUG: Done loading chromatogram headers
17 Nov 2021 09:13:26,110 INFO : Inserting sp|P03452|HEMA_I34A1
17 Nov 2021 09:13:26,118 INFO : 9% Done
17 Nov 2021 09:13:26,171 INFO : 15% Done
17 Nov 2021 09:13:26,217 INFO : 22% Done
17 Nov 2021 09:13:26,259 DEBUG: Total peptides inserted: 3
17 Nov 2021 09:13:26,262 INFO : Inserting sp|P03485|M1_I34A1
17 Nov 2021 09:13:26,266 INFO : 28% Done
17 Nov 2021 09:13:26,307 INFO : 34% Done
17 Nov 2021 09:13:26,347 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:13:26,348 INFO : Inserting peptides1
17 Nov 2021 09:13:26,354 INFO : 42% Done
17 Nov 2021 09:13:26,397 DEBUG: Total peptides inserted: 1
17 Nov 2021 09:13:26,399 INFO : Inserting sp|P03468|NRAM_I34A1
17 Nov 2021 09:13:26,404 INFO : 47% Done
17 Nov 2021 09:13:26,444 INFO : 53% Done
17 Nov 2021 09:13:26,480 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:13:26,482 INFO : Inserting sp|P03466|NCAP_I34A1
17 Nov 2021 09:13:26,487 INFO : 60% Done
17 Nov 2021 09:13:26,532 INFO : 66% Done
17 Nov 2021 09:13:26,579 INFO : 74% Done
17 Nov 2021 09:13:26,623 INFO : 80% Done
17 Nov 2021 09:13:26,664 DEBUG: Total peptides inserted: 4
17 Nov 2021 09:13:26,665 INFO : Done parsing Skyline document.
17 Nov 2021 09:13:26,667 INFO : Calculating fold changes
17 Nov 2021 09:13:26,667 DEBUG: Calculating fold change for group comparison a vs b, 1 of 1
17 Nov 2021 09:13:26,863 INFO : 98% Done
17 Nov 2021 09:13:26,863 INFO : Done calculating fold changes.
17 Nov 2021 09:13:26,864 INFO : Creating and populating temp tables for Proportion values
17 Nov 2021 09:13:26,878 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Nov 2021 09:13:26,891 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Nov 2021 09:13:26,896 INFO : Cleaning up temp tables
17 Nov 2021 09:13:27,242 INFO : Completed import of Skyline document from 20211102_JK_Supernatant_S2_2021-11-02_09-01-22.sky.zip
17 Nov 2021 09:13:27,244 INFO : 100% Done
17 Nov 2021 09:13:27,248 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120835/20211102_JK_Supernatant_S2_2021-11-02_09-01-22.sky.zip into the system
17 Nov 2021 09:13:27,248 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120834/20211102_JK_Supernatant_S1_2021-11-02_09-00-11/20211102_JK_Supernatant_S1.skyd into the system
17 Nov 2021 09:13:27,248 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120834/20211102_JK_Supernatant_S1_2021-11-02_09-00-11/20211102_JK_Supernatant_S1.skyd into the system
17 Nov 2021 09:13:27,248 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120834/20211102_JK_Supernatant_S1_2021-11-02_09-00-11.sky.zip into the system
17 Nov 2021 09:13:27,249 INFO : Starting import from 20211102_JK_Supernatant_S1_2021-11-02_09-00-11.sky.zip
17 Nov 2021 09:13:27,251 INFO : Starting to import Skyline document from 20211102_JK_Supernatant_S1_2021-11-02_09-00-11.sky.zip
17 Nov 2021 09:13:27,252 INFO : Expanding 20211102_JK_Supernatant_S1.skyd
17 Nov 2021 09:13:27,282 INFO : Expanding 20211102_JK_Supernatant_S1.sky.view
17 Nov 2021 09:13:27,283 INFO : Expanding 20211102_JK_Supernatant_S1.sky
17 Nov 2021 09:13:27,296 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
17 Nov 2021 09:13:27,299 INFO : 1% Done
17 Nov 2021 09:13:27,325 DEBUG: Starting to load chromatogram headers
17 Nov 2021 09:13:27,326 DEBUG: Done loading chromatogram headers
17 Nov 2021 09:13:27,363 INFO : Inserting sp|P03452|HEMA_I34A1
17 Nov 2021 09:13:27,478 INFO : 2% Done
17 Nov 2021 09:13:27,559 DEBUG: Total peptides inserted: 3
17 Nov 2021 09:13:27,562 INFO : Inserting sp|P03485|M1_I34A1
17 Nov 2021 09:13:27,603 INFO : 3% Done
17 Nov 2021 09:13:27,640 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:13:27,640 INFO : Inserting peptides1
17 Nov 2021 09:13:27,682 DEBUG: Total peptides inserted: 1
17 Nov 2021 09:13:27,684 INFO : Inserting sp|P03468|NRAM_I34A1
17 Nov 2021 09:13:27,689 INFO : 4% Done
17 Nov 2021 09:13:27,760 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:13:27,763 INFO : 5% Done
17 Nov 2021 09:13:27,765 INFO : Inserting sp|P03466|NCAP_I34A1
17 Nov 2021 09:13:27,811 INFO : 6% Done
17 Nov 2021 09:13:27,930 DEBUG: Total peptides inserted: 4
17 Nov 2021 09:13:27,933 INFO : Inserting PA
17 Nov 2021 09:13:27,983 INFO : 7% Done
17 Nov 2021 09:13:28,065 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:28,071 INFO : 8% Done
17 Nov 2021 09:13:28,170 INFO : 9% Done
17 Nov 2021 09:13:28,237 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:28,272 INFO : 10% Done
17 Nov 2021 09:13:28,406 DEBUG: Inserted 150 peptides
17 Nov 2021 09:13:28,446 DEBUG: Total peptides inserted: 158
17 Nov 2021 09:13:28,450 INFO : Inserting PB1
17 Nov 2021 09:13:28,466 INFO : 11% Done
17 Nov 2021 09:13:28,567 INFO : 12% Done
17 Nov 2021 09:13:28,577 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:28,664 INFO : 13% Done
17 Nov 2021 09:13:28,753 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:28,769 INFO : 14% Done
17 Nov 2021 09:13:28,901 DEBUG: Inserted 150 peptides
17 Nov 2021 09:13:28,946 INFO : 15% Done
17 Nov 2021 09:13:29,031 DEBUG: Inserted 200 peptides
17 Nov 2021 09:13:29,045 INFO : 16% Done
17 Nov 2021 09:13:29,129 INFO : 17% Done
17 Nov 2021 09:13:29,148 DEBUG: Inserted 250 peptides
17 Nov 2021 09:13:29,228 INFO : 18% Done
17 Nov 2021 09:13:29,299 DEBUG: Inserted 300 peptides
17 Nov 2021 09:13:29,409 INFO : 19% Done
17 Nov 2021 09:13:29,424 DEBUG: Inserted 350 peptides
17 Nov 2021 09:13:29,494 INFO : 20% Done
17 Nov 2021 09:13:29,570 DEBUG: Inserted 400 peptides
17 Nov 2021 09:13:29,591 INFO : 21% Done
17 Nov 2021 09:13:29,611 DEBUG: Total peptides inserted: 412
17 Nov 2021 09:13:29,615 INFO : Inserting PB1_2
17 Nov 2021 09:13:29,698 INFO : 22% Done
17 Nov 2021 09:13:29,781 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:29,833 DEBUG: Total peptides inserted: 66
17 Nov 2021 09:13:29,835 INFO : Inserting M1
17 Nov 2021 09:13:29,855 INFO : 23% Done
17 Nov 2021 09:13:29,957 INFO : 24% Done
17 Nov 2021 09:13:29,979 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:30,032 INFO : 25% Done
17 Nov 2021 09:13:30,087 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:30,110 INFO : 26% Done
17 Nov 2021 09:13:30,162 DEBUG: Total peptides inserted: 126
17 Nov 2021 09:13:30,166 INFO : Inserting NEP
17 Nov 2021 09:13:30,294 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:30,304 INFO : 27% Done
17 Nov 2021 09:13:30,327 DEBUG: Total peptides inserted: 66
17 Nov 2021 09:13:30,330 INFO : Inserting PA_2
17 Nov 2021 09:13:30,394 INFO : 28% Done
17 Nov 2021 09:13:30,450 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:30,478 INFO : 29% Done
17 Nov 2021 09:13:30,573 INFO : 30% Done
17 Nov 2021 09:13:30,610 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:30,723 DEBUG: Inserted 150 peptides
17 Nov 2021 09:13:30,751 INFO : 31% Done
17 Nov 2021 09:13:30,829 INFO : 32% Done
17 Nov 2021 09:13:30,842 DEBUG: Inserted 200 peptides
17 Nov 2021 09:13:30,914 INFO : 33% Done
17 Nov 2021 09:13:30,960 DEBUG: Inserted 250 peptides
17 Nov 2021 09:13:30,997 INFO : 34% Done
17 Nov 2021 09:13:31,065 DEBUG: Inserted 300 peptides
17 Nov 2021 09:13:31,160 INFO : 35% Done
17 Nov 2021 09:13:31,192 DEBUG: Inserted 350 peptides
17 Nov 2021 09:13:31,250 INFO : 36% Done
17 Nov 2021 09:13:31,307 DEBUG: Inserted 400 peptides
17 Nov 2021 09:13:31,332 INFO : 37% Done
17 Nov 2021 09:13:31,334 DEBUG: Total peptides inserted: 414
17 Nov 2021 09:13:31,337 INFO : Inserting PB2
17 Nov 2021 09:13:31,435 INFO : 38% Done
17 Nov 2021 09:13:31,537 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:31,633 INFO : 39% Done
17 Nov 2021 09:13:31,674 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:31,739 INFO : 40% Done
17 Nov 2021 09:13:31,828 INFO : 41% Done
17 Nov 2021 09:13:31,837 DEBUG: Inserted 150 peptides
17 Nov 2021 09:13:31,906 INFO : 42% Done
17 Nov 2021 09:13:31,926 DEBUG: Inserted 200 peptides
17 Nov 2021 09:13:32,067 DEBUG: Inserted 250 peptides
17 Nov 2021 09:13:32,078 INFO : 43% Done
17 Nov 2021 09:13:32,165 INFO : 44% Done
17 Nov 2021 09:13:32,191 DEBUG: Inserted 300 peptides
17 Nov 2021 09:13:32,242 DEBUG: Total peptides inserted: 322
17 Nov 2021 09:13:32,245 INFO : Inserting Ns1
17 Nov 2021 09:13:32,251 INFO : 45% Done
17 Nov 2021 09:13:32,348 INFO : 46% Done
17 Nov 2021 09:13:32,410 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:32,526 INFO : 47% Done
17 Nov 2021 09:13:32,532 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:32,611 INFO : 48% Done
17 Nov 2021 09:13:32,638 DEBUG: Total peptides inserted: 140
17 Nov 2021 09:13:32,642 INFO : Inserting M2
17 Nov 2021 09:13:32,697 INFO : 49% Done
17 Nov 2021 09:13:32,775 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:32,776 DEBUG: Total peptides inserted: 50
17 Nov 2021 09:13:32,779 INFO : Inserting HA
17 Nov 2021 09:13:32,790 INFO : 50% Done
17 Nov 2021 09:13:32,858 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:32,954 INFO : 51% Done
17 Nov 2021 09:13:33,003 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:33,029 INFO : 52% Done
17 Nov 2021 09:13:33,080 INFO : 53% Done
17 Nov 2021 09:13:33,149 DEBUG: Inserted 150 peptides
17 Nov 2021 09:13:33,202 INFO : 54% Done
17 Nov 2021 09:13:33,311 DEBUG: Inserted 200 peptides
17 Nov 2021 09:13:33,316 INFO : 55% Done
17 Nov 2021 09:13:33,429 INFO : 56% Done
17 Nov 2021 09:13:33,430 DEBUG: Total peptides inserted: 232
17 Nov 2021 09:13:33,432 INFO : Inserting NP
17 Nov 2021 09:13:33,511 INFO : 57% Done
17 Nov 2021 09:13:33,596 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:33,610 INFO : 58% Done
17 Nov 2021 09:13:33,840 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:33,847 INFO : 59% Done
17 Nov 2021 09:13:33,932 INFO : 60% Done
17 Nov 2021 09:13:33,958 DEBUG: Inserted 150 peptides
17 Nov 2021 09:13:34,036 INFO : 61% Done
17 Nov 2021 09:13:34,139 DEBUG: Inserted 200 peptides
17 Nov 2021 09:13:34,145 INFO : 62% Done
17 Nov 2021 09:13:34,257 DEBUG: Inserted 250 peptides
17 Nov 2021 09:13:34,275 INFO : 63% Done
17 Nov 2021 09:13:34,337 INFO : 64% Done
17 Nov 2021 09:13:34,393 DEBUG: Inserted 300 peptides
17 Nov 2021 09:13:34,421 INFO : 65% Done
17 Nov 2021 09:13:34,466 DEBUG: Total peptides inserted: 320
17 Nov 2021 09:13:34,468 INFO : Inserting Na
17 Nov 2021 09:13:34,506 INFO : 66% Done
17 Nov 2021 09:13:34,589 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:34,676 INFO : 67% Done
17 Nov 2021 09:13:34,730 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:34,739 INFO : 68% Done
17 Nov 2021 09:13:34,828 INFO : 69% Done
17 Nov 2021 09:13:34,846 DEBUG: Total peptides inserted: 138
17 Nov 2021 09:13:34,849 INFO : Inserting sp|P03428|PB2_I34A1
17 Nov 2021 09:13:34,906 INFO : 70% Done
17 Nov 2021 09:13:35,058 DEBUG: Inserted 50 peptides
17 Nov 2021 09:13:35,119 INFO : 71% Done
17 Nov 2021 09:13:35,201 DEBUG: Inserted 100 peptides
17 Nov 2021 09:13:35,221 INFO : 72% Done
17 Nov 2021 09:13:35,319 INFO : 73% Done
17 Nov 2021 09:13:35,370 DEBUG: Inserted 150 peptides
17 Nov 2021 09:13:35,407 INFO : 74% Done
17 Nov 2021 09:13:35,456 DEBUG: Inserted 200 peptides
17 Nov 2021 09:13:35,569 INFO : 75% Done
17 Nov 2021 09:13:35,609 DEBUG: Inserted 250 peptides
17 Nov 2021 09:13:35,660 INFO : 76% Done
17 Nov 2021 09:13:35,734 DEBUG: Inserted 300 peptides
17 Nov 2021 09:13:35,752 INFO : 77% Done
17 Nov 2021 09:13:35,846 INFO : 78% Done
17 Nov 2021 09:13:35,846 DEBUG: Inserted 350 peptides
17 Nov 2021 09:13:35,986 DEBUG: Inserted 400 peptides
17 Nov 2021 09:13:36,028 INFO : 79% Done
17 Nov 2021 09:13:36,114 DEBUG: Inserted 450 peptides
17 Nov 2021 09:13:36,120 INFO : 80% Done
17 Nov 2021 09:13:36,179 DEBUG: Total peptides inserted: 466
17 Nov 2021 09:13:36,180 INFO : Done parsing Skyline document.
17 Nov 2021 09:13:36,181 INFO : Calculating fold changes
17 Nov 2021 09:13:36,181 DEBUG: Calculating fold change for group comparison a vs b, 1 of 1
17 Nov 2021 09:13:50,328 INFO : 98% Done
17 Nov 2021 09:13:50,328 INFO : Done calculating fold changes.
17 Nov 2021 09:13:50,329 INFO : Creating and populating temp tables for Proportion values
17 Nov 2021 09:13:50,345 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Nov 2021 09:13:50,372 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Nov 2021 09:13:50,381 INFO : Cleaning up temp tables
17 Nov 2021 09:13:50,604 INFO : Completed import of Skyline document from 20211102_JK_Supernatant_S1_2021-11-02_09-00-11.sky.zip
17 Nov 2021 09:13:50,607 INFO : 100% Done
17 Nov 2021 09:13:50,610 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120834/20211102_JK_Supernatant_S1_2021-11-02_09-00-11.sky.zip into the system
17 Nov 2021 09:13:50,611 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120836/20211102_JK_Supernatant_S3_2021-11-02_09-01-58/20211102_JK_Supernatant_S3.skyd into the system
17 Nov 2021 09:13:50,611 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120836/20211102_JK_Supernatant_S3_2021-11-02_09-01-58/20211102_JK_Supernatant_S3.skyd into the system
17 Nov 2021 09:13:50,611 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120836/20211102_JK_Supernatant_S3_2021-11-02_09-01-58.sky.zip into the system
17 Nov 2021 09:13:50,612 INFO : Starting import from 20211102_JK_Supernatant_S3_2021-11-02_09-01-58.sky.zip
17 Nov 2021 09:13:50,614 INFO : Starting to import Skyline document from 20211102_JK_Supernatant_S3_2021-11-02_09-01-58.sky.zip
17 Nov 2021 09:13:50,615 INFO : Expanding 20211102_JK_Supernatant_S3.skyd
17 Nov 2021 09:13:50,643 INFO : Expanding 20211102_JK_Supernatant_S3.sky.view
17 Nov 2021 09:13:50,644 INFO : Expanding 20211102_JK_Supernatant_S3.sky
17 Nov 2021 09:13:50,648 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
17 Nov 2021 09:13:50,652 INFO : 2% Done
17 Nov 2021 09:13:50,689 DEBUG: Starting to load chromatogram headers
17 Nov 2021 09:13:50,689 DEBUG: Done loading chromatogram headers
17 Nov 2021 09:13:50,730 INFO : Inserting sp|P03452|HEMA_I34A1
17 Nov 2021 09:13:50,737 INFO : 8% Done
17 Nov 2021 09:13:50,778 INFO : 14% Done
17 Nov 2021 09:13:50,818 INFO : 20% Done
17 Nov 2021 09:13:50,854 DEBUG: Total peptides inserted: 3
17 Nov 2021 09:13:50,856 INFO : Inserting sp|P03485|M1_I34A1
17 Nov 2021 09:13:50,860 INFO : 26% Done
17 Nov 2021 09:13:50,895 INFO : 31% Done
17 Nov 2021 09:13:50,931 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:13:50,931 INFO : Inserting peptides1
17 Nov 2021 09:13:50,937 INFO : 38% Done
17 Nov 2021 09:13:50,973 DEBUG: Total peptides inserted: 1
17 Nov 2021 09:13:50,975 INFO : Inserting sp|P03468|NRAM_I34A1
17 Nov 2021 09:13:50,980 INFO : 44% Done
17 Nov 2021 09:13:51,019 INFO : 49% Done
17 Nov 2021 09:13:51,051 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:13:51,053 INFO : Inserting sp|P03466|NCAP_I34A1
17 Nov 2021 09:13:51,058 INFO : 54% Done
17 Nov 2021 09:13:51,098 INFO : 61% Done
17 Nov 2021 09:13:51,145 INFO : 74% Done
17 Nov 2021 09:13:51,230 INFO : 80% Done
17 Nov 2021 09:13:51,266 DEBUG: Total peptides inserted: 4
17 Nov 2021 09:13:51,267 INFO : Done parsing Skyline document.
17 Nov 2021 09:13:51,268 INFO : Calculating fold changes
17 Nov 2021 09:13:51,268 DEBUG: Calculating fold change for group comparison a vs b, 1 of 1
17 Nov 2021 09:13:51,430 INFO : 98% Done
17 Nov 2021 09:13:51,430 INFO : Done calculating fold changes.
17 Nov 2021 09:13:51,430 INFO : Creating and populating temp tables for Proportion values
17 Nov 2021 09:13:51,444 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Nov 2021 09:13:51,459 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Nov 2021 09:13:51,463 INFO : Cleaning up temp tables
17 Nov 2021 09:13:51,696 INFO : Completed import of Skyline document from 20211102_JK_Supernatant_S3_2021-11-02_09-01-58.sky.zip
17 Nov 2021 09:13:51,698 INFO : 100% Done
17 Nov 2021 09:13:51,701 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120836/20211102_JK_Supernatant_S3_2021-11-02_09-01-58.sky.zip into the system
17 Nov 2021 09:13:51,701 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120873/20190622_PL_Mock_SN_2021-11-02_16-10-37/20190622_PL_Mock_SN.skyd into the system
17 Nov 2021 09:13:51,702 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120873/20190622_PL_Mock_SN_2021-11-02_16-10-37/20190622_PL_Mock_SN.skyd into the system
17 Nov 2021 09:13:51,702 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120873/20190622_PL_Mock_SN_2021-11-02_16-10-37.sky.zip into the system
17 Nov 2021 09:13:51,703 INFO : Starting import from 20190622_PL_Mock_SN_2021-11-02_16-10-37.sky.zip
17 Nov 2021 09:13:51,705 INFO : Starting to import Skyline document from 20190622_PL_Mock_SN_2021-11-02_16-10-37.sky.zip
17 Nov 2021 09:13:51,706 INFO : Expanding 20190622_PL_Mock_SN.skyd
17 Nov 2021 09:13:51,736 INFO : Expanding 20190622_PL_Mock_SN.sky.view
17 Nov 2021 09:13:51,737 INFO : Expanding 20190622_PL_Mock_SN.sky
17 Nov 2021 09:13:51,741 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
17 Nov 2021 09:13:51,745 INFO : 2% Done
17 Nov 2021 09:13:51,771 DEBUG: Starting to load chromatogram headers
17 Nov 2021 09:13:51,772 DEBUG: Done loading chromatogram headers
17 Nov 2021 09:13:51,813 INFO : Inserting sp|P03452|HEMA_I34A1
17 Nov 2021 09:13:51,820 INFO : 9% Done
17 Nov 2021 09:13:51,891 INFO : 14% Done
17 Nov 2021 09:13:51,949 INFO : 21% Done
17 Nov 2021 09:13:52,007 DEBUG: Total peptides inserted: 3
17 Nov 2021 09:13:52,009 INFO : Inserting sp|P03485|M1_I34A1
17 Nov 2021 09:13:52,013 INFO : 26% Done
17 Nov 2021 09:13:52,057 INFO : 31% Done
17 Nov 2021 09:13:52,105 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:13:52,105 INFO : Inserting peptides1
17 Nov 2021 09:13:52,116 INFO : 42% Done
17 Nov 2021 09:13:52,200 DEBUG: Total peptides inserted: 1
17 Nov 2021 09:13:52,202 INFO : Inserting sp|P03468|NRAM_I34A1
17 Nov 2021 09:13:52,207 INFO : 48% Done
17 Nov 2021 09:13:52,258 INFO : 53% Done
17 Nov 2021 09:13:52,300 DEBUG: Total peptides inserted: 2
17 Nov 2021 09:13:52,302 INFO : Inserting sp|P03466|NCAP_I34A1
17 Nov 2021 09:13:52,307 INFO : 58% Done
17 Nov 2021 09:13:52,359 INFO : 66% Done
17 Nov 2021 09:13:52,424 INFO : 75% Done
17 Nov 2021 09:13:52,504 INFO : 80% Done
17 Nov 2021 09:13:52,547 DEBUG: Total peptides inserted: 4
17 Nov 2021 09:13:52,547 INFO : Done parsing Skyline document.
17 Nov 2021 09:13:52,549 INFO : Calculating fold changes
17 Nov 2021 09:13:52,549 DEBUG: Calculating fold change for group comparison a vs b, 1 of 1
17 Nov 2021 09:13:52,753 INFO : 98% Done
17 Nov 2021 09:13:52,753 INFO : Done calculating fold changes.
17 Nov 2021 09:13:52,754 INFO : Creating and populating temp tables for Proportion values
17 Nov 2021 09:13:52,768 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Nov 2021 09:13:52,781 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Nov 2021 09:13:52,786 INFO : Cleaning up temp tables
17 Nov 2021 09:13:53,013 INFO : Completed import of Skyline document from 20190622_PL_Mock_SN_2021-11-02_16-10-37.sky.zip
17 Nov 2021 09:13:53,015 INFO : 100% Done
17 Nov 2021 09:13:53,019 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120873/20190622_PL_Mock_SN_2021-11-02_16-10-37.sky.zip into the system
17 Nov 2021 09:13:53,032 INFO : Done importing xar
17 Nov 2021 09:13:53,034 INFO : Loading pages and webpart properties
17 Nov 2021 09:13:53,101 INFO : Done importing pages and webpart properties
17 Nov 2021 09:13:53,102 INFO : Done importing folder archive for Supernatant
17 Nov 2021 09:13:53,102 INFO : Done importing subfolders and container tabs
17 Nov 2021 09:13:53,102 INFO : 
17 Nov 2021 09:13:53,102 INFO : Experiment import completed successfully.
17 Nov 2021 09:13:53,102 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
17 Nov 2021 09:15:05,811 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
17 Nov 2021 09:15:05,812 INFO : 
17 Nov 2021 09:15:05,812 INFO : Finishing up experiment copy.
17 Nov 2021 09:15:05,813 INFO : Adding runs imported in subfolders.
17 Nov 2021 09:15:05,826 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
17 Nov 2021 09:15:05,827 INFO : Assigning a ProteomeXchange ID.
17 Nov 2021 09:15:06,158 INFO : Assigning a DOI.
17 Nov 2021 09:15:07,692 INFO : Assigned DOI: 10.6069/g80d-zw25
17 Nov 2021 09:15:07,697 INFO : Updating access URL to point to the new copy of the data.
17 Nov 2021 09:15:07,702 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
17 Nov 2021 09:15:07,703 INFO : Removing copy permissions given to journal.
17 Nov 2021 09:15:07,723 INFO : Adding read permissions to all users that are folder admins in the source container.
17 Nov 2021 09:15:07,728 INFO : Setting the TargetedMS folder type to 'Experimental Data'
17 Nov 2021 09:15:07,742 INFO : Updating the 'Raw Data' tab configuration
17 Nov 2021 09:15:07,746 INFO : Updating dataFileUrls for run 20211102_JK_Cell Pellet_S3_2021-11-02_08-59-23.sky.zip; targetedms run ID 125227
17 Nov 2021 09:15:07,746 INFO : Updating dataFileUrl...
17 Nov 2021 09:15:07,746 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120833/20211102_JK_Cell%20Pellet_S3_2021-11-02_08-59-23/20211102_JK_Cell%20Pellet_S3.skyd
17 Nov 2021 09:15:07,746 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK/Cell%20Pellet/@files/20211102_JK_Cell%20Pellet_S3_2021-11-02_08-59-23/20211102_JK_Cell%20Pellet_S3.skyd
17 Nov 2021 09:15:07,748 INFO : Updating dataFileUrl...
17 Nov 2021 09:15:07,748 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120833/20211102_JK_Cell%20Pellet_S3_2021-11-02_08-59-23.sky.zip
17 Nov 2021 09:15:07,748 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK/Cell%20Pellet/@files/20211102_JK_Cell%20Pellet_S3_2021-11-02_08-59-23.sky.zip
17 Nov 2021 09:15:07,751 INFO : Updating dataFileUrls for run 20211102_JK_Cell Pellet_S2_2021-11-02_08-58-38.sky.zip; targetedms run ID 125228
17 Nov 2021 09:15:07,752 INFO : Updating dataFileUrl...
17 Nov 2021 09:15:07,752 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120832/20211102_JK_Cell%20Pellet_S2_2021-11-02_08-58-38/20211102_JK_Cell%20Pellet_S2.skyd
17 Nov 2021 09:15:07,752 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK/Cell%20Pellet/@files/20211102_JK_Cell%20Pellet_S2_2021-11-02_08-58-38/20211102_JK_Cell%20Pellet_S2.skyd
17 Nov 2021 09:15:07,753 INFO : Updating dataFileUrl...
17 Nov 2021 09:15:07,753 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120832/20211102_JK_Cell%20Pellet_S2_2021-11-02_08-58-38.sky.zip
17 Nov 2021 09:15:07,753 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK/Cell%20Pellet/@files/20211102_JK_Cell%20Pellet_S2_2021-11-02_08-58-38.sky.zip
17 Nov 2021 09:15:07,755 INFO : Updating dataFileUrls for run 20190622_PL_Mock_CP_2021-11-02_16-10-02.sky.zip; targetedms run ID 125229
17 Nov 2021 09:15:07,755 INFO : Updating dataFileUrl...
17 Nov 2021 09:15:07,756 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Cell%20Pellet/xar/experiments_and_runs.xar.exploded/Run120872/20190622_PL_Mock_CP_2021-11-02_16-10-02/20190622_PL_Mock_CP.skyd
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17 Nov 2021 09:15:07,759 INFO : Updating dataFileUrls for run 20211102_JK_Cell Pellet_S1_2021-11-02_08-56-47.sky.zip; targetedms run ID 125230
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17 Nov 2021 09:15:07,763 INFO : Updating dataFileUrls for run 20211102_JK_Supernatant_S2_2021-11-02_09-01-22.sky.zip; targetedms run ID 125232
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17 Nov 2021 09:15:07,770 INFO : Updating dataFileUrls for run 20211102_JK_Supernatant_S3_2021-11-02_09-01-58.sky.zip; targetedms run ID 125234
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17 Nov 2021 09:15:07,775 INFO : Updating dataFileUrl...
17 Nov 2021 09:15:07,775 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Magdeburg%20Benndorf%20Lab%20-%20Absolute%20quantification%20of%20influenza%20virus%20proteins-JK_ebc5e1c8-29f3-103a-bfdd-fea6ddf55ce4/_temp__2021-11-17_08-51-33/export/subfolders/Supernatant/xar/experiments_and_runs.xar.exploded/Run120873/20190622_PL_Mock_SN_2021-11-02_16-10-37.sky.zip
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17 Nov 2021 09:15:07,787 INFO : Creating a reviewer account.
17 Nov 2021 09:15:08,008 INFO : Created reviewer with email: User panorama+reviewer78@proteinms.net
17 Nov 2021 09:15:08,015 INFO : Hiding the Data Pipeline tab.
17 Nov 2021 09:15:08,106 INFO : Emailing submitter.
17 Nov 2021 09:15:08,221 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'