06 May 2021 08:13:47,790 INFO : Copying experiment "Mapping interactome networks of FOSL1 and FOSL2 in human Th17 cells" from folder /Turku Bioscience - Lahesmaa Group/FOSL to /Panorama Public/2021/Turku Bioscience Lahesmaa Group - FOSL
06 May 2021 08:13:47,790 INFO : =======================================
06 May 2021 08:13:47,855 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
06 May 2021 08:13:47,855 INFO : 
06 May 2021 08:13:47,855 INFO : Exporting experiment.
06 May 2021 08:14:33,884 INFO : 
06 May 2021 08:14:33,884 INFO : Experiment export completed successfully.
06 May 2021 08:14:33,884 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
06 May 2021 08:15:02,288 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
06 May 2021 08:15:02,288 INFO : 
06 May 2021 08:15:02,288 INFO : Importing experiment.
06 May 2021 08:15:02,295 INFO : Loading folder properties (folder type, settings and active modules)
06 May 2021 08:15:02,382 INFO : Done importing folder properties (folder type, settings and active modules)
06 May 2021 08:15:02,385 INFO : Loading etl definitions
06 May 2021 08:15:02,387 INFO : Loading wikis
06 May 2021 08:15:02,388 INFO : 0 wikis imported
06 May 2021 08:15:02,388 INFO : Done importing wikis
06 May 2021 08:15:02,389 INFO : Starting to copy files
06 May 2021 08:15:43,484 INFO : Copied 103 files
06 May 2021 08:15:43,484 INFO : Ensuring exp.data rows exist for imported files
06 May 2021 08:15:44,155 INFO : Starting Sample Type and Data Class import
06 May 2021 08:15:44,156 INFO : No types XAR file to process.
06 May 2021 08:15:44,156 INFO : Finished importing Sample Types and Data Classes
06 May 2021 08:15:44,159 INFO : Loading xar
06 May 2021 08:15:44,297 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip'
06 May 2021 08:15:44,301 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip.Core'
06 May 2021 08:15:44,304 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip.Output'
06 May 2021 08:15:44,304 DEBUG: Protocol import complete
06 May 2021 08:15:44,306 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8485:Mapping+interactome+networks+of+FOSL1+and+FOSL2+in+human+Th17+cells'
06 May 2021 08:15:44,306 DEBUG: Experiment/Run group import complete
06 May 2021 08:15:44,326 DEBUG: Protocol action set import complete
06 May 2021 08:15:44,340 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip'
06 May 2021 08:15:44,350 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8485:792fd226-8bbc-1039-805a-fea6ddf523e8'
06 May 2021 08:15:44,355 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8485:792fd214-8bbc-1039-805a-fea6ddf523e8'
06 May 2021 08:15:44,355 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip.Core'
06 May 2021 08:15:44,359 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip.Output'
06 May 2021 08:15:44,359 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8485:792fd273-8bbc-1039-805a-fea6ddf523e8'
06 May 2021 08:15:44,367 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip'
06 May 2021 08:15:44,374 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8485:792fd98f-8bbc-1039-805a-fea6ddf523e8'
06 May 2021 08:15:44,379 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8485:792fd958-8bbc-1039-805a-fea6ddf523e8'
06 May 2021 08:15:44,379 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip.Core'
06 May 2021 08:15:44,381 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8485:TargetedMS.ImportSkyZip.Output'
06 May 2021 08:15:44,382 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8485:792fda2c-8bbc-1039-805a-fea6ddf523e8'
06 May 2021 08:15:44,383 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107604/191224_FOSL2_IP_ts_2021-04-30_11-39-08/191224_FOSL2_IP_ts.skyd into the system
06 May 2021 08:15:44,383 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107604/191224_FOSL2_IP_ts_2021-04-30_11-39-08/191224_FOSL2_IP_ts.skyd into the system
06 May 2021 08:15:44,383 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107604/191224_FOSL2_IP_ts_2021-04-30_11-39-08.sky.zip into the system
06 May 2021 08:15:44,385 INFO : Starting import from 191224_FOSL2_IP_ts_2021-04-30_11-39-08.sky.zip
06 May 2021 08:15:44,392 INFO : Starting to import Skyline document from 191224_FOSL2_IP_ts_2021-04-30_11-39-08.sky.zip
06 May 2021 08:15:44,394 INFO : Expanding 191224_FOSL_IP.protdb
06 May 2021 08:15:44,396 INFO : Expanding 191224_FOSL_IP.irtdb
06 May 2021 08:15:44,397 INFO : Expanding 191224_FOSL_IP.blib
06 May 2021 08:15:44,409 INFO : Expanding 191224_FOSL_IP.redundant.blib
06 May 2021 08:15:44,438 INFO : Expanding 191224_FOSL2_IP_ts.skyd
06 May 2021 08:15:44,485 INFO : Expanding 191224_FOSL2_IP_ts.sky.view
06 May 2021 08:15:44,486 INFO : Expanding 191224_FOSL2_IP_ts.sky
06 May 2021 08:15:44,507 INFO : 1% Done
06 May 2021 08:15:44,586 DEBUG: Starting to load chromatogram headers
06 May 2021 08:15:44,588 DEBUG: Done loading chromatogram headers
06 May 2021 08:15:44,667 INFO : Inserting sp|CD48|CD48_HUMAN
06 May 2021 08:15:44,683 INFO : 3% Done
06 May 2021 08:15:44,764 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:44,766 INFO : Inserting sp|CD5|CD5_HUMAN
06 May 2021 08:15:44,773 INFO : 5% Done
06 May 2021 08:15:44,818 INFO : 7% Done
06 May 2021 08:15:44,855 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:44,857 INFO : Inserting sp|DHX15|DHX15_HUMAN
06 May 2021 08:15:44,861 INFO : 10% Done
06 May 2021 08:15:44,903 INFO : 11% Done
06 May 2021 08:15:44,932 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:44,934 INFO : Inserting sp|EIF4E|EIF4E_HUMAN
06 May 2021 08:15:44,945 INFO : 13% Done
06 May 2021 08:15:45,010 INFO : 15% Done
06 May 2021 08:15:45,044 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:45,046 INFO : Inserting sp|FOSL2|FOSL2_HUMAN
06 May 2021 08:15:45,055 INFO : 18% Done
06 May 2021 08:15:45,105 INFO : 19% Done
06 May 2021 08:15:45,136 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:45,138 INFO : Inserting sp|HNRNPH1|HNRNPH1_HUMAN
06 May 2021 08:15:45,143 INFO : 20% Done
06 May 2021 08:15:45,173 INFO : 22% Done
06 May 2021 08:15:45,205 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:45,207 INFO : Inserting sp|HNRNPH2|HNRNPH2_HUMAN
06 May 2021 08:15:45,213 INFO : 25% Done
06 May 2021 08:15:45,248 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:45,250 INFO : Inserting sp|IFI16|IFI16_HUMAN
06 May 2021 08:15:45,255 INFO : 26% Done
06 May 2021 08:15:45,284 INFO : 29% Done
06 May 2021 08:15:45,319 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:45,320 INFO : Inserting sp|ILF2|ILF2_HUMAN
06 May 2021 08:15:45,326 INFO : 31% Done
06 May 2021 08:15:45,364 INFO : 33% Done
06 May 2021 08:15:45,396 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:45,398 INFO : Inserting sp|KIF2C|KIF2C_HUMAN
06 May 2021 08:15:45,404 INFO : 35% Done
06 May 2021 08:15:45,433 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:45,435 INFO : Inserting sp|LARP4|LARP4_HUMAN
06 May 2021 08:15:45,442 INFO : 38% Done
06 May 2021 08:15:45,487 INFO : 40% Done
06 May 2021 08:15:45,525 INFO : 42% Done
06 May 2021 08:15:45,557 DEBUG: Total peptides inserted: 3
06 May 2021 08:15:45,559 INFO : Inserting sp|MSRT1|MSRT1_HUMAN
06 May 2021 08:15:45,563 INFO : 43% Done
06 May 2021 08:15:45,581 INFO : 45% Done
06 May 2021 08:15:45,597 INFO : 46% Done
06 May 2021 08:15:45,614 INFO : 47% Done
06 May 2021 08:15:45,631 INFO : 48% Done
06 May 2021 08:15:45,648 INFO : 50% Done
06 May 2021 08:15:45,679 INFO : 52% Done
06 May 2021 08:15:45,697 INFO : 53% Done
06 May 2021 08:15:45,713 INFO : 54% Done
06 May 2021 08:15:45,730 INFO : 55% Done
06 May 2021 08:15:45,748 INFO : 58% Done
06 May 2021 08:15:45,778 DEBUG: Total peptides inserted: 14
06 May 2021 08:15:45,780 INFO : Inserting sp|MYO1D|MYO1D_HUMAN
06 May 2021 08:15:45,784 INFO : 61% Done
06 May 2021 08:15:45,822 INFO : 63% Done
06 May 2021 08:15:45,851 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:45,853 INFO : Inserting sp|SERBP1|SERBP1_HUMAN
06 May 2021 08:15:45,858 INFO : 66% Done
06 May 2021 08:15:45,892 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:45,893 INFO : Inserting sp|STAU1|STAU1_HUMAN
06 May 2021 08:15:45,899 INFO : 68% Done
06 May 2021 08:15:45,930 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:45,931 INFO : Inserting sp|SYNCRIP|SYNCRIP_HUMAN
06 May 2021 08:15:45,936 INFO : 70% Done
06 May 2021 08:15:45,966 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:45,967 INFO : Inserting sp|TRIM21|TRIM21_HUMAN
06 May 2021 08:15:45,973 INFO : 72% Done
06 May 2021 08:15:46,012 INFO : 74% Done
06 May 2021 08:15:46,040 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:46,041 INFO : Inserting sp|USP7|USP7_HUMAN
06 May 2021 08:15:46,047 INFO : 77% Done
06 May 2021 08:15:46,077 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:46,079 INFO : Inserting sp|VAPA|VAPA_HUMAN
06 May 2021 08:15:46,084 INFO : 78% Done
06 May 2021 08:15:46,112 INFO : 80% Done
06 May 2021 08:15:46,144 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:46,145 INFO : Done parsing Skyline document.
06 May 2021 08:15:46,147 INFO : Calculating fold changes
06 May 2021 08:15:46,147 DEBUG: Calculating fold change for group comparison FOSL2 Vs FOSL2_IgG, 1 of 1
06 May 2021 08:15:47,045 INFO : 98% Done
06 May 2021 08:15:47,045 INFO : Done calculating fold changes.
06 May 2021 08:15:47,046 INFO : Creating and populating temp tables for Proportion values
06 May 2021 08:15:47,062 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
06 May 2021 08:15:47,089 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
06 May 2021 08:15:47,099 INFO : Cleaning up temp tables
06 May 2021 08:15:47,568 INFO : Completed import of Skyline document from 191224_FOSL2_IP_ts_2021-04-30_11-39-08.sky.zip
06 May 2021 08:15:47,575 INFO : 100% Done
06 May 2021 08:15:47,585 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107604/191224_FOSL2_IP_ts_2021-04-30_11-39-08.sky.zip into the system
06 May 2021 08:15:47,585 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107605/191224_FOSL1_IP_2021-04-30_11-40-54/191224_FOSL1_IP.skyd into the system
06 May 2021 08:15:47,586 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107605/191224_FOSL1_IP_2021-04-30_11-40-54/191224_FOSL1_IP.skyd into the system
06 May 2021 08:15:47,587 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107605/191224_FOSL1_IP_2021-04-30_11-40-54.sky.zip into the system
06 May 2021 08:15:47,590 INFO : Starting import from 191224_FOSL1_IP_2021-04-30_11-40-54.sky.zip
06 May 2021 08:15:47,595 INFO : Starting to import Skyline document from 191224_FOSL1_IP_2021-04-30_11-40-54.sky.zip
06 May 2021 08:15:47,598 INFO : Expanding 191224_FOSL_IP.protdb
06 May 2021 08:15:47,601 INFO : Expanding 191224_FOSL_IP.irtdb
06 May 2021 08:15:47,601 INFO : Expanding 191224_FOSL_IP.blib
06 May 2021 08:15:47,613 INFO : Expanding 191224_FOSL_IP.redundant.blib
06 May 2021 08:15:47,638 INFO : Expanding 191224_FOSL1_IP.skyd
06 May 2021 08:15:47,693 INFO : Expanding 191224_FOSL1_IP.sky.view
06 May 2021 08:15:47,694 INFO : Expanding 191224_FOSL1_IP.sky
06 May 2021 08:15:47,724 INFO : 1% Done
06 May 2021 08:15:47,833 DEBUG: Starting to load chromatogram headers
06 May 2021 08:15:47,835 DEBUG: Done loading chromatogram headers
06 May 2021 08:15:47,841 INFO : Calculated iRT regression line from full standard list.
06 May 2021 08:15:47,903 INFO : Inserting sp|ATXN2|ATXN2_HUMAN
06 May 2021 08:15:47,913 INFO : 2% Done
06 May 2021 08:15:48,003 INFO : 4% Done
06 May 2021 08:15:48,076 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:48,079 INFO : Inserting sp|COL1A1|COL1A1_HUMAN
06 May 2021 08:15:48,096 INFO : 6% Done
06 May 2021 08:15:48,182 INFO : 7% Done
06 May 2021 08:15:48,248 INFO : 10% Done
06 May 2021 08:15:48,303 DEBUG: Total peptides inserted: 3
06 May 2021 08:15:48,307 INFO : Inserting sp|COL1A2|COL1A2_HUMAN
06 May 2021 08:15:48,316 INFO : 11% Done
06 May 2021 08:15:48,369 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:48,370 INFO : Inserting sp|DHX15|DHX15_HUMAN
06 May 2021 08:15:48,376 INFO : 12% Done
06 May 2021 08:15:48,426 INFO : 14% Done
06 May 2021 08:15:48,517 INFO : 16% Done
06 May 2021 08:15:48,568 DEBUG: Total peptides inserted: 4
06 May 2021 08:15:48,569 INFO : Inserting sp|EIF4E|EIF4E_HUMAN
06 May 2021 08:15:48,579 INFO : 17% Done
06 May 2021 08:15:48,627 INFO : 18% Done
06 May 2021 08:15:48,652 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:48,653 INFO : Inserting sp|FOSL1|FOSL1_HUMAN
06 May 2021 08:15:48,661 INFO : 19% Done
06 May 2021 08:15:48,720 INFO : 22% Done
06 May 2021 08:15:48,770 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:48,772 INFO : Inserting sp|HDAC2|HDAC2_HUMAN
06 May 2021 08:15:48,823 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:48,825 INFO : Inserting sp|HNRNPH1|HNRNPH1_HUMAN
06 May 2021 08:15:48,835 INFO : 24% Done
06 May 2021 08:15:48,893 INFO : 26% Done
06 May 2021 08:15:48,955 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:48,956 INFO : Inserting sp|HNRNPH2|HNRNPH2_HUMAN
06 May 2021 08:15:48,965 INFO : 27% Done
06 May 2021 08:15:49,026 INFO : 29% Done
06 May 2021 08:15:49,075 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:49,076 INFO : Inserting sp|IFI16|IFI16_HUMAN
06 May 2021 08:15:49,082 INFO : 30% Done
06 May 2021 08:15:49,122 INFO : 32% Done
06 May 2021 08:15:49,171 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:49,172 INFO : Inserting sp|ILF2|ILF2_HUMAN
06 May 2021 08:15:49,179 INFO : 34% Done
06 May 2021 08:15:49,252 INFO : 35% Done
06 May 2021 08:15:49,322 INFO : 37% Done
06 May 2021 08:15:49,385 DEBUG: Total peptides inserted: 3
06 May 2021 08:15:49,386 INFO : Inserting sp|KIF2C|KIF2C_HUMAN
06 May 2021 08:15:49,392 INFO : 38% Done
06 May 2021 08:15:49,432 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:49,433 INFO : Inserting sp|LARP4|LARP4_HUMAN
06 May 2021 08:15:49,439 INFO : 40% Done
06 May 2021 08:15:49,495 INFO : 42% Done
06 May 2021 08:15:49,547 INFO : 43% Done
06 May 2021 08:15:49,601 INFO : 47% Done
06 May 2021 08:15:49,702 INFO : 49% Done
06 May 2021 08:15:49,750 DEBUG: Total peptides inserted: 5
06 May 2021 08:15:49,751 INFO : Inserting sp|MSRT1|MSRT1_HUMAN
06 May 2021 08:15:49,755 INFO : 50% Done
06 May 2021 08:15:49,817 INFO : 51% Done
06 May 2021 08:15:49,849 INFO : 53% Done
06 May 2021 08:15:49,877 INFO : 54% Done
06 May 2021 08:15:49,926 INFO : 55% Done
06 May 2021 08:15:49,951 INFO : 56% Done
06 May 2021 08:15:49,976 INFO : 57% Done
06 May 2021 08:15:50,012 INFO : 58% Done
06 May 2021 08:15:50,041 INFO : 59% Done
06 May 2021 08:15:50,067 INFO : 60% Done
06 May 2021 08:15:50,092 INFO : 61% Done
06 May 2021 08:15:50,112 DEBUG: Total peptides inserted: 14
06 May 2021 08:15:50,114 INFO : Inserting sp|SERBP1|SERBP1_HUMAN
06 May 2021 08:15:50,122 INFO : 62% Done
06 May 2021 08:15:50,175 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:50,177 INFO : Inserting sp|SMARCE1|SMARCE1_HUMAN
06 May 2021 08:15:50,184 INFO : 64% Done
06 May 2021 08:15:50,237 DEBUG: Total peptides inserted: 1
06 May 2021 08:15:50,239 INFO : Inserting sp|STAU1|STAU1_HUMAN
06 May 2021 08:15:50,253 INFO : 66% Done
06 May 2021 08:15:50,327 INFO : 67% Done
06 May 2021 08:15:50,389 INFO : 70% Done
06 May 2021 08:15:50,446 INFO : 71% Done
06 May 2021 08:15:50,522 INFO : 73% Done
06 May 2021 08:15:50,580 DEBUG: Total peptides inserted: 5
06 May 2021 08:15:50,582 INFO : Inserting sp|SYNCRIP|SYNCRIP_HUMAN
06 May 2021 08:15:50,591 INFO : 74% Done
06 May 2021 08:15:50,696 INFO : 76% Done
06 May 2021 08:15:50,762 INFO : 78% Done
06 May 2021 08:15:50,833 DEBUG: Total peptides inserted: 3
06 May 2021 08:15:50,834 INFO : Inserting sp|VAPA|VAPA_HUMAN
06 May 2021 08:15:50,883 INFO : 80% Done
06 May 2021 08:15:50,935 DEBUG: Total peptides inserted: 2
06 May 2021 08:15:50,935 INFO : Done parsing Skyline document.
06 May 2021 08:15:50,938 INFO : Calculating fold changes
06 May 2021 08:15:50,938 DEBUG: Calculating fold change for group comparison FOS1 Vs IgG, 1 of 1
06 May 2021 08:15:51,983 INFO : 98% Done
06 May 2021 08:15:51,983 INFO : Done calculating fold changes.
06 May 2021 08:15:51,984 INFO : Creating and populating temp tables for Proportion values
06 May 2021 08:15:51,999 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
06 May 2021 08:15:52,040 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
06 May 2021 08:15:52,057 INFO : Cleaning up temp tables
06 May 2021 08:15:52,561 INFO : Completed import of Skyline document from 191224_FOSL1_IP_2021-04-30_11-40-54.sky.zip
06 May 2021 08:15:52,567 INFO : 100% Done
06 May 2021 08:15:52,576 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107605/191224_FOSL1_IP_2021-04-30_11-40-54.sky.zip into the system
06 May 2021 08:15:52,599 INFO : Done importing xar
06 May 2021 08:15:52,604 INFO : Loading pages and webpart properties
06 May 2021 08:15:52,712 INFO : Done importing pages and webpart properties
06 May 2021 08:15:52,713 INFO : 
06 May 2021 08:15:52,713 INFO : Experiment import completed successfully.
06 May 2021 08:15:52,713 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
06 May 2021 08:15:52,757 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
06 May 2021 08:15:52,757 INFO : 
06 May 2021 08:15:52,757 INFO : Finishing up experiment copy.
06 May 2021 08:15:52,758 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
06 May 2021 08:15:52,760 INFO : Assigning a ProteomeXchange ID.
06 May 2021 08:15:53,840 INFO : Assigning a DOI.
06 May 2021 08:15:55,852 INFO : Assigned DOI: 10.6069/hzkr-v784
06 May 2021 08:15:55,860 INFO : Updating access URL to point to the new copy of the data.
06 May 2021 08:15:55,866 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
06 May 2021 08:15:55,867 INFO : Removing copy permissions given to journal.
06 May 2021 08:15:55,910 INFO : Adding read permissions to all users that are folder admins in the source container.
06 May 2021 08:15:55,920 INFO : Setting the TargetedMS folder type to 'Experimental Data'
06 May 2021 08:15:55,930 INFO : Updating the 'Raw Data' tab configuration
06 May 2021 08:15:55,933 INFO : Updating dataFileUrls for run 191224_FOSL2_IP_ts_2021-04-30_11-39-08.sky.zip; targetedms run ID 110216
06 May 2021 08:15:55,933 INFO : Updating dataFileUrl...
06 May 2021 08:15:55,933 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107604/191224_FOSL2_IP_ts_2021-04-30_11-39-08/191224_FOSL2_IP_ts.skyd
06 May 2021 08:15:55,933 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL/@files/191224_FOSL2_IP_ts_2021-04-30_11-39-08/191224_FOSL2_IP_ts.skyd
06 May 2021 08:15:55,936 INFO : Updating dataFileUrl...
06 May 2021 08:15:55,936 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107604/191224_FOSL2_IP_ts_2021-04-30_11-39-08.sky.zip
06 May 2021 08:15:55,936 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL/@files/191224_FOSL2_IP_ts_2021-04-30_11-39-08.sky.zip
06 May 2021 08:15:55,940 INFO : Updating dataFileUrls for run 191224_FOSL1_IP_2021-04-30_11-40-54.sky.zip; targetedms run ID 110217
06 May 2021 08:15:55,941 INFO : Updating dataFileUrl...
06 May 2021 08:15:55,941 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107605/191224_FOSL1_IP_2021-04-30_11-40-54/191224_FOSL1_IP.skyd
06 May 2021 08:15:55,941 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL/@files/191224_FOSL1_IP_2021-04-30_11-40-54/191224_FOSL1_IP.skyd
06 May 2021 08:15:55,943 INFO : Updating dataFileUrl...
06 May 2021 08:15:55,943 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL_68acd3ca-90ab-1039-a9d2-fea6ddf5fcf4/_temp__2021-05-06_08-13-47/export/xar/experiments_and_runs.xar.exploded/Run107605/191224_FOSL1_IP_2021-04-30_11-40-54.sky.zip
06 May 2021 08:15:55,943 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Turku%20Bioscience%20Lahesmaa%20Group%20-%20FOSL/@files/191224_FOSL1_IP_2021-04-30_11-40-54.sky.zip
06 May 2021 08:15:55,946 INFO : Creating a reviewer account.
06 May 2021 08:15:56,280 INFO : Created reviewer with email: User panorama+reviewer28@proteinms.net
06 May 2021 08:15:56,294 INFO : Hiding the Data Pipeline tab.
06 May 2021 08:15:56,422 INFO : Emailing submitter.
06 May 2021 08:15:56,561 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'