05 Oct 2021 20:37:23,740 INFO : Copying experiment "MS quantification of circulating CFP-10, p24 and VP40" from folder /Tulane U -  Biochem Hu Lab/qantitative MS of antigens to /Panorama Public/2021/Tulane U Biochem Hu Lab - Quantitative MS of antigens
05 Oct 2021 20:37:23,740 INFO : =======================================
05 Oct 2021 20:37:23,800 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
05 Oct 2021 20:37:23,800 INFO : 
05 Oct 2021 20:37:23,801 INFO : Exporting experiment.
05 Oct 2021 20:50:33,761 INFO : 
05 Oct 2021 20:50:33,761 INFO : Experiment export completed successfully.
05 Oct 2021 20:50:33,761 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
05 Oct 2021 20:50:35,650 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
05 Oct 2021 20:50:35,651 INFO : 
05 Oct 2021 20:50:35,651 INFO : Importing experiment.
05 Oct 2021 20:50:35,671 INFO : Loading folder properties (folder type, settings and active modules)
05 Oct 2021 20:50:35,752 INFO : Done importing folder properties (folder type, settings and active modules)
05 Oct 2021 20:50:35,755 INFO : Loading etl definitions
05 Oct 2021 20:50:35,757 INFO : Loading wikis
05 Oct 2021 20:50:35,759 INFO : 0 wikis imported
05 Oct 2021 20:50:35,759 INFO : Done importing wikis
05 Oct 2021 20:50:35,760 INFO : Starting to copy files
05 Oct 2021 20:52:38,035 INFO : 348 files copied, now copying 6_801195_24_CFP10.raw
05 Oct 2021 20:53:55,175 INFO : 375 files copied, now copying RESTV_R3.raw
05 Oct 2021 20:54:04,900 INFO : 431 files copied, now copying 00186.raw
05 Oct 2021 20:56:16,620 INFO : 480 files copied, now copying 40030.raw
05 Oct 2021 20:56:34,297 INFO : 487 files copied, now copying 202018J_60.raw
05 Oct 2021 20:58:37,373 INFO : 512 files copied, now copying 800666_24.raw
05 Oct 2021 20:58:38,316 INFO : 513 files copied, now copying parameters.txt
05 Oct 2021 20:58:52,489 INFO : 524 files copied, now copying S10_1.raw
05 Oct 2021 20:58:58,405 INFO : 583 files copied, now copying F77.raw
05 Oct 2021 21:00:54,416 INFO : 620 files copied, now copying Zaire_VP40_trypsin.raw
05 Oct 2021 21:01:04,901 INFO : 628 files copied, now copying 0_75_pM.raw
05 Oct 2021 21:02:54,428 INFO : 662 files copied, now copying p24pep result for six HIV-1 and TB co-infected patients.sky.view
05 Oct 2021 21:02:55,952 INFO : 667 files copied, now copying MRM analysis of two VP40 peptides for standard curve with VLPs.redundant.blib
05 Oct 2021 21:02:56,777 INFO : 673 files copied, now copying p24pep assay result for assay sensitivity and specificity.sky.view
05 Oct 2021 21:02:56,826 INFO : 678 files copied, now copying MRM analysis of two VP40 peptides for standard curve with VLPs.skyd
05 Oct 2021 21:02:56,943 INFO : 684 files copied, now copying p24pep standard curve using recombinant protein.sky.view
05 Oct 2021 21:02:56,981 INFO : 689 files copied, now copying VP40_peptide_12_SUDV.skyd
05 Oct 2021 21:02:57,032 INFO : 695 files copied, now copying HIV-1 adult cohort for p24pep assay validation.sky
05 Oct 2021 21:02:57,084 INFO : 698 files copied, now copying Other species PBS with virions.sky.view
05 Oct 2021 21:02:57,141 INFO : Copied 704 files
05 Oct 2021 21:02:57,141 INFO : Ensuring exp.data rows exist for imported files
05 Oct 2021 21:03:00,964 INFO : Starting Sample Type and Data Class import
05 Oct 2021 21:03:00,965 INFO : No types XAR file to process.
05 Oct 2021 21:03:00,965 INFO : Finished importing Sample Types and Data Classes
05 Oct 2021 21:03:00,968 INFO : Loading xar
05 Oct 2021 21:03:01,471 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,474 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,476 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,477 DEBUG: Protocol import complete
05 Oct 2021 21:03:01,481 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9171:MRM+quantification+of+circulating+CFP10'
05 Oct 2021 21:03:01,481 DEBUG: Experiment/Run group import complete
05 Oct 2021 21:03:01,492 DEBUG: Protocol action set import complete
05 Oct 2021 21:03:01,514 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,524 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:fa77e57a-8a65-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,529 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:fa77e55d-8a65-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,529 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,532 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,533 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:fa77e58c-8a65-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,541 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,547 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:e53d20de-8a9c-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,551 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:e53d20cf-8a9c-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,551 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,553 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,554 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:e53d20e7-8a9c-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,563 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,568 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:f6bf22a4-0756-103a-b54f-fea6ddf5779e'
05 Oct 2021 21:03:01,572 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:f6bf2292-0756-103a-b54f-fea6ddf5779e'
05 Oct 2021 21:03:01,572 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,574 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,575 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:f6bf22b0-0756-103a-b54f-fea6ddf5779e'
05 Oct 2021 21:03:01,585 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,590 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:f02759e2-0754-103a-b54f-fea6ddf5779e'
05 Oct 2021 21:03:01,594 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:f02759d3-0754-103a-b54f-fea6ddf5779e'
05 Oct 2021 21:03:01,594 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,596 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,597 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:f02759f0-0754-103a-b54f-fea6ddf5779e'
05 Oct 2021 21:03:01,606 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,611 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:027e3eab-8a9f-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,615 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:027e3e9c-8a9f-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,616 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,618 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,619 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:027e3eba-8a9f-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,630 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,636 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:027e3276-8a9f-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,643 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:027e3267-8a9f-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,643 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,646 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,647 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:027e327a-8a9f-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,660 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,666 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:71d67183-8aa0-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,670 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:71d6715c-8aa0-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,670 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,672 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,673 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:71d6718e-8aa0-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,682 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,687 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:3b315d06-8a86-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,691 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:3b315cf7-8a86-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,691 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,693 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,694 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:3b315d0a-8a86-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,704 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,709 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:a991c4bf-8aa1-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,713 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:a991c4ad-8aa1-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,713 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,716 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,717 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:a991c4cc-8aa1-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,727 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,732 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:c58dea6c-8a87-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,737 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:c58dea5d-8a87-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,737 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,739 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,739 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:c58dea77-8a87-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,748 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,753 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:c58dce94-8a87-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,758 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:c58dce85-8a87-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,758 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,760 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,761 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:c58dcea0-8a87-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,770 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip'
05 Oct 2021 21:03:01,776 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9171:dc2ff563-8a89-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,780 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9171:dc2ff554-8a89-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,780 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Core'
05 Oct 2021 21:03:01,782 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9171:TargetedMS.ImportSkyZip.Output'
05 Oct 2021 21:03:01,783 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9171:dc2ff577-8a89-1039-805a-fea6ddf523e8'
05 Oct 2021 21:03:01,787 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107488/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs_2021-04-28_10-51-43/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs.skyd into the system
05 Oct 2021 21:03:01,787 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107488/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs_2021-04-28_10-51-43/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs.skyd into the system
05 Oct 2021 21:03:01,788 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107488/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs_2021-04-28_10-51-43.sky.zip into the system
05 Oct 2021 21:03:01,790 INFO : Starting import from MRM analysis of two VP40 peptides for standard curve with VLPs_2021-04-28_10-51-43.sky.zip
05 Oct 2021 21:03:01,797 INFO : Starting to import Skyline document from MRM analysis of two VP40 peptides for standard curve with VLPs_2021-04-28_10-51-43.sky.zip
05 Oct 2021 21:03:01,799 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.blib
05 Oct 2021 21:03:01,808 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.redundant.blib
05 Oct 2021 21:03:01,836 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.skyd
05 Oct 2021 21:03:01,866 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.sky.view
05 Oct 2021 21:03:01,867 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.sky
05 Oct 2021 21:03:01,870 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.skyl
05 Oct 2021 21:03:01,885 INFO : 6% Done
05 Oct 2021 21:03:01,904 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:01,905 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:02,022 INFO : Inserting sp|Q05128|VP40_EBOZM
05 Oct 2021 21:03:02,055 INFO : 43% Done
05 Oct 2021 21:03:02,069 WARN : 'skyline for VP40_0328' library was not found in settings.
05 Oct 2021 21:03:02,264 INFO : 62% Done
05 Oct 2021 21:03:02,333 DEBUG: Total peptides inserted: 2
05 Oct 2021 21:03:02,338 INFO : Inserting sp|Q5XX06|VP40_EBOSU
05 Oct 2021 21:03:02,350 INFO : 80% Done
05 Oct 2021 21:03:02,434 INFO : 98% Done
05 Oct 2021 21:03:02,495 DEBUG: Total peptides inserted: 2
05 Oct 2021 21:03:02,496 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:03,687 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:03,702 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:03,716 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:03,723 INFO : Cleaning up temp tables
05 Oct 2021 21:03:03,980 INFO : Completed import of Skyline document from MRM analysis of two VP40 peptides for standard curve with VLPs_2021-04-28_10-51-43.sky.zip
05 Oct 2021 21:03:03,985 INFO : 100% Done
05 Oct 2021 21:03:03,990 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107488/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs_2021-04-28_10-51-43.sky.zip into the system
05 Oct 2021 21:03:03,990 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107507/p24pep%20assay%20result%20for%20assay%20sensitivity%20and%20specificity_2021-04-28_17-25-32/p24pep%20assay%20result%20for%20assay%20sensitivity%20and%20specificity.skyd into the system
05 Oct 2021 21:03:03,991 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107507/p24pep%20assay%20result%20for%20assay%20sensitivity%20and%20specificity_2021-04-28_17-25-32/p24pep%20assay%20result%20for%20assay%20sensitivity%20and%20specificity.skyd into the system
05 Oct 2021 21:03:03,991 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107507/p24pep%20assay%20result%20for%20assay%20sensitivity%20and%20specificity_2021-04-28_17-25-32.sky.zip into the system
05 Oct 2021 21:03:03,994 INFO : Starting import from p24pep assay result for assay sensitivity and specificity_2021-04-28_17-25-32.sky.zip
05 Oct 2021 21:03:03,997 INFO : Starting to import Skyline document from p24pep assay result for assay sensitivity and specificity_2021-04-28_17-25-32.sky.zip
05 Oct 2021 21:03:03,998 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.blib
05 Oct 2021 21:03:04,001 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.redundant.blib
05 Oct 2021 21:03:04,007 INFO : Expanding p24pep assay result for assay sensitivity and specificity.skyd
05 Oct 2021 21:03:04,022 INFO : Expanding p24pep assay result for assay sensitivity and specificity.sky.view
05 Oct 2021 21:03:04,023 INFO : Expanding p24pep assay result for assay sensitivity and specificity.sky
05 Oct 2021 21:03:04,033 INFO : 15% Done
05 Oct 2021 21:03:04,038 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:04,038 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:04,118 INFO : Inserting Core
05 Oct 2021 21:03:04,128 INFO : 71% Done
05 Oct 2021 21:03:04,189 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:04,191 INFO : 74% Done
05 Oct 2021 21:03:04,193 INFO : Inserting sp|P03349|GAG_HV1A_Variant
05 Oct 2021 21:03:04,199 INFO : 98% Done
05 Oct 2021 21:03:04,219 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:04,220 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:04,222 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:04,234 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:04,237 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:04,239 INFO : Cleaning up temp tables
05 Oct 2021 21:03:04,469 INFO : Completed import of Skyline document from p24pep assay result for assay sensitivity and specificity_2021-04-28_17-25-32.sky.zip
05 Oct 2021 21:03:04,472 INFO : 100% Done
05 Oct 2021 21:03:04,477 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107507/p24pep%20assay%20result%20for%20assay%20sensitivity%20and%20specificity_2021-04-28_17-25-32.sky.zip into the system
05 Oct 2021 21:03:04,477 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run118547/Other%20species%20PBS%20with%20virions_2021-10-04_10-39-31/Other%20species%20PBS%20with%20virions.skyd into the system
05 Oct 2021 21:03:04,477 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run118547/Other%20species%20PBS%20with%20virions_2021-10-04_10-39-31/Other%20species%20PBS%20with%20virions.skyd into the system
05 Oct 2021 21:03:04,478 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run118547/Other%20species%20PBS%20with%20virions_2021-10-04_10-39-31.sky.zip into the system
05 Oct 2021 21:03:04,479 INFO : Starting import from Other species PBS with virions_2021-10-04_10-39-31.sky.zip
05 Oct 2021 21:03:04,481 INFO : Starting to import Skyline document from Other species PBS with virions_2021-10-04_10-39-31.sky.zip
05 Oct 2021 21:03:04,481 INFO : Expanding Other species PBS with virions.blib
05 Oct 2021 21:03:04,482 INFO : Expanding Other species PBS with virions.redundant.blib
05 Oct 2021 21:03:04,497 INFO : Expanding Other species PBS with virions.skyd
05 Oct 2021 21:03:04,502 INFO : Expanding Other species PBS with virions.sky.view
05 Oct 2021 21:03:04,502 INFO : Expanding Other species PBS with virions.sky
05 Oct 2021 21:03:04,503 INFO : Expanding Other species PBS with virions.skyl
05 Oct 2021 21:03:04,504 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
05 Oct 2021 21:03:04,509 INFO : 6% Done
05 Oct 2021 21:03:04,510 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:04,510 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:04,548 INFO : Inserting sp|Q8JPX9|VP40_EBORR
05 Oct 2021 21:03:04,555 INFO : 25% Done
05 Oct 2021 21:03:04,558 WARN : 'Other species' library was not found in settings.
05 Oct 2021 21:03:04,573 INFO : 37% Done
05 Oct 2021 21:03:04,584 DEBUG: Total peptides inserted: 2
05 Oct 2021 21:03:04,587 INFO : 40% Done
05 Oct 2021 21:03:04,607 INFO : Inserting tr|B8XCN8|B8XCN8_9MONO
05 Oct 2021 21:03:04,612 INFO : 54% Done
05 Oct 2021 21:03:04,629 INFO : 70% Done
05 Oct 2021 21:03:04,641 DEBUG: Total peptides inserted: 2
05 Oct 2021 21:03:04,644 INFO : Inserting tr|B8XCM9|B8XCM9_9MONO
05 Oct 2021 21:03:04,649 INFO : 85% Done
05 Oct 2021 21:03:04,665 INFO : 98% Done
05 Oct 2021 21:03:04,678 DEBUG: Total peptides inserted: 2
05 Oct 2021 21:03:04,679 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:04,966 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:04,976 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:04,980 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:04,982 INFO : Cleaning up temp tables
05 Oct 2021 21:03:05,213 INFO : Completed import of Skyline document from Other species PBS with virions_2021-10-04_10-39-31.sky.zip
05 Oct 2021 21:03:05,216 INFO : 100% Done
05 Oct 2021 21:03:05,220 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run118547/Other%20species%20PBS%20with%20virions_2021-10-04_10-39-31.sky.zip into the system
05 Oct 2021 21:03:05,220 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run118546/VP40%20p12%20variant_2021-10-04_10-30-51/VP40%20p12%20variant.skyd into the system
05 Oct 2021 21:03:05,221 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run118546/VP40%20p12%20variant_2021-10-04_10-30-51/VP40%20p12%20variant.skyd into the system
05 Oct 2021 21:03:05,221 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run118546/VP40%20p12%20variant_2021-10-04_10-30-51.sky.zip into the system
05 Oct 2021 21:03:05,222 INFO : Starting import from VP40 p12 variant_2021-10-04_10-30-51.sky.zip
05 Oct 2021 21:03:05,225 INFO : Starting to import Skyline document from VP40 p12 variant_2021-10-04_10-30-51.sky.zip
05 Oct 2021 21:03:05,226 INFO : Expanding VP40 p12 variant.blib
05 Oct 2021 21:03:05,227 INFO : Expanding VP40 p12 variant.redundant.blib
05 Oct 2021 21:03:05,243 INFO : Expanding VP40 p12 variant.skyd
05 Oct 2021 21:03:05,259 INFO : Expanding VP40 p12 variant.sky.view
05 Oct 2021 21:03:05,259 INFO : Expanding VP40 p12 variant.sky
05 Oct 2021 21:03:05,262 INFO : Expanding VP40 p12 variant.skyl
05 Oct 2021 21:03:05,265 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
05 Oct 2021 21:03:05,274 INFO : 5% Done
05 Oct 2021 21:03:05,281 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:05,281 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:05,349 INFO : Inserting sp|Q8JPX9|VP40_EBORR
05 Oct 2021 21:03:05,362 INFO : 32% Done
05 Oct 2021 21:03:05,464 INFO : 45% Done
05 Oct 2021 21:03:05,497 DEBUG: Total peptides inserted: 2
05 Oct 2021 21:03:05,504 INFO : Inserting tr|B8XCN8|B8XCN8_9MONO
05 Oct 2021 21:03:05,511 INFO : 59% Done
05 Oct 2021 21:03:05,554 INFO : 72% Done
05 Oct 2021 21:03:05,584 DEBUG: Total peptides inserted: 2
05 Oct 2021 21:03:05,586 INFO : Inserting tr|B8XCM9|B8XCM9_9MONO
05 Oct 2021 21:03:05,593 INFO : 85% Done
05 Oct 2021 21:03:05,630 INFO : 98% Done
05 Oct 2021 21:03:05,659 DEBUG: Total peptides inserted: 2
05 Oct 2021 21:03:05,659 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:06,104 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:06,116 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:06,124 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:06,129 INFO : Cleaning up temp tables
05 Oct 2021 21:03:06,350 INFO : Completed import of Skyline document from VP40 p12 variant_2021-10-04_10-30-51.sky.zip
05 Oct 2021 21:03:06,353 INFO : 100% Done
05 Oct 2021 21:03:06,357 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run118546/VP40%20p12%20variant_2021-10-04_10-30-51.sky.zip into the system
05 Oct 2021 21:03:06,357 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107509/p24pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients_2021-04-28_17-37-41/p24pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients.skyd into the system
05 Oct 2021 21:03:06,358 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107509/p24pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients_2021-04-28_17-37-41/p24pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients.skyd into the system
05 Oct 2021 21:03:06,358 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107509/p24pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients_2021-04-28_17-37-41.sky.zip into the system
05 Oct 2021 21:03:06,359 INFO : Starting import from p24pep result for six HIV-1 and TB co-infected patients_2021-04-28_17-37-41.sky.zip
05 Oct 2021 21:03:06,362 INFO : Starting to import Skyline document from p24pep result for six HIV-1 and TB co-infected patients_2021-04-28_17-37-41.sky.zip
05 Oct 2021 21:03:06,364 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.blib
05 Oct 2021 21:03:06,367 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.redundant.blib
05 Oct 2021 21:03:06,373 INFO : Expanding p24pep result for six HIV-1 and TB co-infected patients.skyd
05 Oct 2021 21:03:06,391 INFO : Expanding p24pep result for six HIV-1 and TB co-infected patients.sky.view
05 Oct 2021 21:03:06,391 INFO : Expanding p24pep result for six HIV-1 and TB co-infected patients.sky
05 Oct 2021 21:03:06,399 INFO : 15% Done
05 Oct 2021 21:03:06,403 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:06,404 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:06,480 INFO : Inserting Core
05 Oct 2021 21:03:06,488 INFO : 73% Done
05 Oct 2021 21:03:06,541 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:06,542 INFO : Inserting sp|P03349|GAG_HV1A_Variant
05 Oct 2021 21:03:06,547 INFO : 98% Done
05 Oct 2021 21:03:06,565 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:06,566 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:06,568 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:06,581 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:06,583 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:06,585 INFO : Cleaning up temp tables
05 Oct 2021 21:03:06,802 INFO : Completed import of Skyline document from p24pep result for six HIV-1 and TB co-infected patients_2021-04-28_17-37-41.sky.zip
05 Oct 2021 21:03:06,805 INFO : 100% Done
05 Oct 2021 21:03:06,810 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107509/p24pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients_2021-04-28_17-37-41.sky.zip into the system
05 Oct 2021 21:03:06,811 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107508/p24pep%20assay%20using%20HIV-1%20seroconversion%20panel%20of%20patient_2021-04-28_17-33-57/p24pep%20assay%20using%20HIV-1%20seroconversion%20panel%20of%20patient.skyd into the system
05 Oct 2021 21:03:06,811 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107508/p24pep%20assay%20using%20HIV-1%20seroconversion%20panel%20of%20patient_2021-04-28_17-33-57/p24pep%20assay%20using%20HIV-1%20seroconversion%20panel%20of%20patient.skyd into the system
05 Oct 2021 21:03:06,812 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107508/p24pep%20assay%20using%20HIV-1%20seroconversion%20panel%20of%20patient_2021-04-28_17-33-57.sky.zip into the system
05 Oct 2021 21:03:06,814 INFO : Starting import from p24pep assay using HIV-1 seroconversion panel of patient_2021-04-28_17-33-57.sky.zip
05 Oct 2021 21:03:06,817 INFO : Starting to import Skyline document from p24pep assay using HIV-1 seroconversion panel of patient_2021-04-28_17-33-57.sky.zip
05 Oct 2021 21:03:06,819 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.blib
05 Oct 2021 21:03:06,822 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.redundant.blib
05 Oct 2021 21:03:06,828 INFO : Expanding p24pep assay using HIV-1 seroconversion panel of patient.skyd
05 Oct 2021 21:03:06,854 INFO : Expanding p24pep assay using HIV-1 seroconversion panel of patient.sky.view
05 Oct 2021 21:03:06,855 INFO : Expanding p24pep assay using HIV-1 seroconversion panel of patient.sky
05 Oct 2021 21:03:06,863 INFO : 19% Done
05 Oct 2021 21:03:06,868 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:06,868 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:06,977 INFO : Inserting Core
05 Oct 2021 21:03:06,992 INFO : 80% Done
05 Oct 2021 21:03:07,084 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:07,085 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:07,090 INFO : No group comparisons found.
05 Oct 2021 21:03:07,090 INFO : Calculating calibration curves
05 Oct 2021 21:03:07,091 DEBUG: Calculating calibration curve for Core, 1 of 1
05 Oct 2021 21:03:07,120 INFO : 98% Done
05 Oct 2021 21:03:07,122 INFO : Done calculating calibration curves.
05 Oct 2021 21:03:07,123 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:07,137 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:07,141 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:07,143 INFO : Cleaning up temp tables
05 Oct 2021 21:03:07,379 INFO : Completed import of Skyline document from p24pep assay using HIV-1 seroconversion panel of patient_2021-04-28_17-33-57.sky.zip
05 Oct 2021 21:03:07,382 INFO : 100% Done
05 Oct 2021 21:03:07,387 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107508/p24pep%20assay%20using%20HIV-1%20seroconversion%20panel%20of%20patient_2021-04-28_17-33-57.sky.zip into the system
05 Oct 2021 21:03:07,388 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107511/p24pep%20standard%20curve%20using%20recombinant%20protein_2021-04-28_17-45-11/p24pep%20standard%20curve%20using%20recombinant%20protein.skyd into the system
05 Oct 2021 21:03:07,388 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107511/p24pep%20standard%20curve%20using%20recombinant%20protein_2021-04-28_17-45-11/p24pep%20standard%20curve%20using%20recombinant%20protein.skyd into the system
05 Oct 2021 21:03:07,388 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107511/p24pep%20standard%20curve%20using%20recombinant%20protein_2021-04-28_17-45-11.sky.zip into the system
05 Oct 2021 21:03:07,390 INFO : Starting import from p24pep standard curve using recombinant protein_2021-04-28_17-45-11.sky.zip
05 Oct 2021 21:03:07,392 INFO : Starting to import Skyline document from p24pep standard curve using recombinant protein_2021-04-28_17-45-11.sky.zip
05 Oct 2021 21:03:07,393 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.blib
05 Oct 2021 21:03:07,397 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.redundant.blib
05 Oct 2021 21:03:07,403 INFO : Expanding p24pep standard curve using recombinant protein.skyd
05 Oct 2021 21:03:07,414 INFO : Expanding p24pep standard curve using recombinant protein.sky.view
05 Oct 2021 21:03:07,415 INFO : Expanding p24pep standard curve using recombinant protein.sky
05 Oct 2021 21:03:07,422 INFO : 20% Done
05 Oct 2021 21:03:07,426 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:07,426 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:07,500 INFO : Inserting Core
05 Oct 2021 21:03:07,512 INFO : 98% Done
05 Oct 2021 21:03:07,580 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:07,581 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:07,582 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:07,594 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:07,596 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:07,598 INFO : Cleaning up temp tables
05 Oct 2021 21:03:07,822 INFO : Completed import of Skyline document from p24pep standard curve using recombinant protein_2021-04-28_17-45-11.sky.zip
05 Oct 2021 21:03:07,825 INFO : 100% Done
05 Oct 2021 21:03:07,828 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107511/p24pep%20standard%20curve%20using%20recombinant%20protein_2021-04-28_17-45-11.sky.zip into the system
05 Oct 2021 21:03:07,828 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107497/VP40_peptide_12_EBOV_2021-04-28_14-41-14/VP40_peptide_12_EBOV.skyd into the system
05 Oct 2021 21:03:07,829 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107497/VP40_peptide_12_EBOV_2021-04-28_14-41-14/VP40_peptide_12_EBOV.skyd into the system
05 Oct 2021 21:03:07,829 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107497/VP40_peptide_12_EBOV_2021-04-28_14-41-14.sky.zip into the system
05 Oct 2021 21:03:07,831 INFO : Starting import from VP40_peptide_12_EBOV_2021-04-28_14-41-14.sky.zip
05 Oct 2021 21:03:07,833 INFO : Starting to import Skyline document from VP40_peptide_12_EBOV_2021-04-28_14-41-14.sky.zip
05 Oct 2021 21:03:07,834 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.blib
05 Oct 2021 21:03:07,842 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.redundant.blib
05 Oct 2021 21:03:07,869 INFO : Expanding VP40_peptide_12_EBOV.skyd
05 Oct 2021 21:03:07,874 INFO : Expanding VP40_peptide_12_EBOV.sky.view
05 Oct 2021 21:03:07,874 INFO : Expanding VP40_peptide_12_EBOV.sky
05 Oct 2021 21:03:07,875 INFO : Expanding VP40_peptide_12_EBOV.skyl
05 Oct 2021 21:03:07,881 INFO : 11% Done
05 Oct 2021 21:03:07,883 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:07,883 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:07,921 INFO : Inserting sp|Q05128|VP40_EBOZM
05 Oct 2021 21:03:07,929 INFO : 71% Done
05 Oct 2021 21:03:07,967 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:07,972 INFO : Inserting sp|Q5XX06|VP40_EBOSU
05 Oct 2021 21:03:07,978 INFO : 98% Done
05 Oct 2021 21:03:07,992 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:07,993 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:08,312 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:08,324 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:08,327 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:08,328 INFO : Cleaning up temp tables
05 Oct 2021 21:03:08,547 INFO : Completed import of Skyline document from VP40_peptide_12_EBOV_2021-04-28_14-41-14.sky.zip
05 Oct 2021 21:03:08,551 INFO : 100% Done
05 Oct 2021 21:03:08,554 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107497/VP40_peptide_12_EBOV_2021-04-28_14-41-14.sky.zip into the system
05 Oct 2021 21:03:08,554 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107513/CFP-10pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients_2021-04-28_17-57-22/CFP-10pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients.skyd into the system
05 Oct 2021 21:03:08,555 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107513/CFP-10pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients_2021-04-28_17-57-22/CFP-10pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients.skyd into the system
05 Oct 2021 21:03:08,555 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107513/CFP-10pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients_2021-04-28_17-57-22.sky.zip into the system
05 Oct 2021 21:03:08,556 INFO : Starting import from CFP-10pep result for six HIV-1 and TB co-infected patients_2021-04-28_17-57-22.sky.zip
05 Oct 2021 21:03:08,559 INFO : Starting to import Skyline document from CFP-10pep result for six HIV-1 and TB co-infected patients_2021-04-28_17-57-22.sky.zip
05 Oct 2021 21:03:08,559 INFO : Expanding CFP-10pep result for six HIV-1 and TB co-infected patients.blib
05 Oct 2021 21:03:08,563 INFO : Expanding CFP-10pep result for six HIV-1 and TB co-infected patients.redundant.blib
05 Oct 2021 21:03:08,569 INFO : Expanding CFP-10pep result for six HIV-1 and TB co-infected patients.skyd
05 Oct 2021 21:03:08,575 INFO : Expanding CFP-10pep result for six HIV-1 and TB co-infected patients.sky.view
05 Oct 2021 21:03:08,576 INFO : Expanding CFP-10pep result for six HIV-1 and TB co-infected patients.sky
05 Oct 2021 21:03:08,582 INFO : 18% Done
05 Oct 2021 21:03:08,585 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:08,586 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:08,652 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
05 Oct 2021 21:03:08,662 INFO : 98% Done
05 Oct 2021 21:03:08,738 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:08,739 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:08,740 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:08,753 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:08,755 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:08,757 INFO : Cleaning up temp tables
05 Oct 2021 21:03:08,766 INFO : Completed import of Skyline document from CFP-10pep result for six HIV-1 and TB co-infected patients_2021-04-28_17-57-22.sky.zip
05 Oct 2021 21:03:08,769 INFO : 100% Done
05 Oct 2021 21:03:08,774 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107513/CFP-10pep%20result%20for%20six%20HIV-1%20and%20TB%20co-infected%20patients_2021-04-28_17-57-22.sky.zip into the system
05 Oct 2021 21:03:08,774 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107499/HIV-1%20adult%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-54-12/HIV-1%20adult%20cohort%20for%20p24pep%20assay%20validation.skyd into the system
05 Oct 2021 21:03:08,775 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107499/HIV-1%20adult%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-54-12/HIV-1%20adult%20cohort%20for%20p24pep%20assay%20validation.skyd into the system
05 Oct 2021 21:03:08,775 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107499/HIV-1%20adult%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-54-12.sky.zip into the system
05 Oct 2021 21:03:08,777 INFO : Starting import from HIV-1 adult cohort for p24pep assay validation_2021-04-28_14-54-12.sky.zip
05 Oct 2021 21:03:08,780 INFO : Starting to import Skyline document from HIV-1 adult cohort for p24pep assay validation_2021-04-28_14-54-12.sky.zip
05 Oct 2021 21:03:08,783 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.skyd
05 Oct 2021 21:03:08,845 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.sky.view
05 Oct 2021 21:03:08,845 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.sky
05 Oct 2021 21:03:08,856 INFO : 14% Done
05 Oct 2021 21:03:08,873 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:08,873 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:09,010 INFO : Inserting Core
05 Oct 2021 21:03:09,031 INFO : 70% Done
05 Oct 2021 21:03:09,206 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:09,209 INFO : 71% Done
05 Oct 2021 21:03:09,213 INFO : Inserting sp|P03349|GAG_HV1A_Variant
05 Oct 2021 21:03:09,225 INFO : 98% Done
05 Oct 2021 21:03:09,288 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:09,289 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:09,291 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:09,303 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:09,312 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:09,316 INFO : Cleaning up temp tables
05 Oct 2021 21:03:09,541 INFO : Completed import of Skyline document from HIV-1 adult cohort for p24pep assay validation_2021-04-28_14-54-12.sky.zip
05 Oct 2021 21:03:09,544 INFO : 100% Done
05 Oct 2021 21:03:09,550 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107499/HIV-1%20adult%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-54-12.sky.zip into the system
05 Oct 2021 21:03:09,550 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107498/VP40_peptide_12_SUDV_2021-04-28_14-43-06/VP40_peptide_12_SUDV.skyd into the system
05 Oct 2021 21:03:09,551 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107498/VP40_peptide_12_SUDV_2021-04-28_14-43-06/VP40_peptide_12_SUDV.skyd into the system
05 Oct 2021 21:03:09,551 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107498/VP40_peptide_12_SUDV_2021-04-28_14-43-06.sky.zip into the system
05 Oct 2021 21:03:09,553 INFO : Starting import from VP40_peptide_12_SUDV_2021-04-28_14-43-06.sky.zip
05 Oct 2021 21:03:09,557 INFO : Starting to import Skyline document from VP40_peptide_12_SUDV_2021-04-28_14-43-06.sky.zip
05 Oct 2021 21:03:09,557 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.blib
05 Oct 2021 21:03:09,567 INFO : Expanding MRM analysis of two VP40 peptides for standard curve with VLPs.redundant.blib
05 Oct 2021 21:03:09,595 INFO : Expanding VP40_peptide_12_SUDV.skyd
05 Oct 2021 21:03:09,600 INFO : Expanding VP40_peptide_12_SUDV.sky.view
05 Oct 2021 21:03:09,601 INFO : Expanding VP40_peptide_12_SUDV.sky
05 Oct 2021 21:03:09,601 INFO : Expanding VP40_peptide_12_SUDV.skyl
05 Oct 2021 21:03:09,609 INFO : 11% Done
05 Oct 2021 21:03:09,611 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:09,611 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:09,667 INFO : Inserting sp|Q05128|VP40_EBOZM
05 Oct 2021 21:03:09,676 INFO : 70% Done
05 Oct 2021 21:03:09,721 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:09,723 INFO : 74% Done
05 Oct 2021 21:03:09,726 INFO : Inserting sp|Q5XX06|VP40_EBOSU
05 Oct 2021 21:03:09,731 INFO : 98% Done
05 Oct 2021 21:03:09,747 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:09,748 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:09,964 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:09,974 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:09,975 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:09,976 INFO : Cleaning up temp tables
05 Oct 2021 21:03:10,199 INFO : Completed import of Skyline document from VP40_peptide_12_SUDV_2021-04-28_14-43-06.sky.zip
05 Oct 2021 21:03:10,203 INFO : 100% Done
05 Oct 2021 21:03:10,206 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107498/VP40_peptide_12_SUDV_2021-04-28_14-43-06.sky.zip into the system
05 Oct 2021 21:03:10,207 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107500/HIV-1%20infant%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-57-49/HIV-1%20infant%20cohort%20for%20p24pep%20assay%20validation.skyd into the system
05 Oct 2021 21:03:10,207 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107500/HIV-1%20infant%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-57-49/HIV-1%20infant%20cohort%20for%20p24pep%20assay%20validation.skyd into the system
05 Oct 2021 21:03:10,208 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107500/HIV-1%20infant%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-57-49.sky.zip into the system
05 Oct 2021 21:03:10,209 INFO : Starting import from HIV-1 infant cohort for p24pep assay validation_2021-04-28_14-57-49.sky.zip
05 Oct 2021 21:03:10,213 INFO : Starting to import Skyline document from HIV-1 infant cohort for p24pep assay validation_2021-04-28_14-57-49.sky.zip
05 Oct 2021 21:03:10,214 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.blib
05 Oct 2021 21:03:10,218 INFO : Expanding HIV-1 adult cohort for p24pep assay validation.redundant.blib
05 Oct 2021 21:03:10,224 INFO : Expanding HIV-1 infant cohort for p24pep assay validation.skyd
05 Oct 2021 21:03:10,255 INFO : Expanding HIV-1 infant cohort for p24pep assay validation.sky.view
05 Oct 2021 21:03:10,255 INFO : Expanding HIV-1 infant cohort for p24pep assay validation.sky
05 Oct 2021 21:03:10,263 INFO : 14% Done
05 Oct 2021 21:03:10,271 DEBUG: Starting to load chromatogram headers
05 Oct 2021 21:03:10,272 DEBUG: Done loading chromatogram headers
05 Oct 2021 21:03:10,354 INFO : Inserting Core
05 Oct 2021 21:03:10,365 INFO : 71% Done
05 Oct 2021 21:03:10,456 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:10,458 INFO : 73% Done
05 Oct 2021 21:03:10,459 INFO : Inserting sp|P03349|GAG_HV1A_Variant
05 Oct 2021 21:03:10,467 INFO : 98% Done
05 Oct 2021 21:03:10,498 DEBUG: Total peptides inserted: 1
05 Oct 2021 21:03:10,499 INFO : Done parsing Skyline document.
05 Oct 2021 21:03:10,502 INFO : Creating and populating temp tables for Proportion values
05 Oct 2021 21:03:10,515 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Oct 2021 21:03:10,520 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Oct 2021 21:03:10,522 INFO : Cleaning up temp tables
05 Oct 2021 21:03:10,752 INFO : Completed import of Skyline document from HIV-1 infant cohort for p24pep assay validation_2021-04-28_14-57-49.sky.zip
05 Oct 2021 21:03:10,756 INFO : 100% Done
05 Oct 2021 21:03:10,761 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107500/HIV-1%20infant%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-57-49.sky.zip into the system
05 Oct 2021 21:03:10,806 INFO : Done importing xar
05 Oct 2021 21:03:10,808 INFO : Loading pages and webpart properties
05 Oct 2021 21:03:10,887 INFO : Done importing pages and webpart properties
05 Oct 2021 21:03:10,888 INFO : 
05 Oct 2021 21:03:10,888 INFO : Experiment import completed successfully.
05 Oct 2021 21:03:10,889 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
05 Oct 2021 21:03:52,516 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
05 Oct 2021 21:03:52,517 INFO : 
05 Oct 2021 21:03:52,517 INFO : Finishing up experiment copy.
05 Oct 2021 21:03:52,520 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
05 Oct 2021 21:03:52,524 INFO : Copying ProteomeXchange ID from the previous copy of the data.
05 Oct 2021 21:03:52,524 INFO : Copying DOI from the previous copy of the data.
05 Oct 2021 21:03:52,529 INFO : Updating access URL to point to the new copy of the data.
05 Oct 2021 21:03:52,541 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
05 Oct 2021 21:03:52,543 INFO : Removing copy permissions given to journal.
05 Oct 2021 21:03:52,560 INFO : Adding read permissions to all users that are folder admins in the source container.
05 Oct 2021 21:03:52,562 INFO : Adding read permissions to all users that had read access to previous copy.
05 Oct 2021 21:03:52,571 INFO : Setting the TargetedMS folder type to 'Experimental Data'
05 Oct 2021 21:03:52,576 INFO : Updating the 'Raw Data' tab configuration
05 Oct 2021 21:03:52,580 INFO : Updating dataFileUrls for run MRM analysis of two VP40 peptides for standard curve with VLPs_2021-04-28_10-51-43.sky.zip; targetedms run ID 121555
05 Oct 2021 21:03:52,580 INFO : Updating dataFileUrl...
05 Oct 2021 21:03:52,580 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107488/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs_2021-04-28_10-51-43.sky.zip
05 Oct 2021 21:03:52,580 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens/@files/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs_2021-04-28_10-51-43.sky.zip
05 Oct 2021 21:03:52,583 INFO : Updating dataFileUrl...
05 Oct 2021 21:03:52,583 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107488/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs_2021-04-28_10-51-43/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs.skyd
05 Oct 2021 21:03:52,584 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens/@files/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs_2021-04-28_10-51-43/MRM%20analysis%20of%20two%20VP40%20peptides%20for%20standard%20curve%20with%20VLPs.skyd
05 Oct 2021 21:03:52,588 INFO : Updating dataFileUrls for run p24pep assay result for assay sensitivity and specificity_2021-04-28_17-25-32.sky.zip; targetedms run ID 121556
05 Oct 2021 21:03:52,588 INFO : Updating dataFileUrl...
05 Oct 2021 21:03:52,588 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107507/p24pep%20assay%20result%20for%20assay%20sensitivity%20and%20specificity_2021-04-28_17-25-32.sky.zip
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05 Oct 2021 21:03:52,595 INFO : Updating dataFileUrls for run Other species PBS with virions_2021-10-04_10-39-31.sky.zip; targetedms run ID 121557
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05 Oct 2021 21:03:52,602 INFO : Updating dataFileUrls for run VP40 p12 variant_2021-10-04_10-30-51.sky.zip; targetedms run ID 121558
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05 Oct 2021 21:03:52,604 INFO : Updating dataFileUrl...
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05 Oct 2021 21:03:52,607 INFO : Updating dataFileUrls for run p24pep result for six HIV-1 and TB co-infected patients_2021-04-28_17-37-41.sky.zip; targetedms run ID 121559
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05 Oct 2021 21:03:52,612 INFO : Updating dataFileUrls for run p24pep assay using HIV-1 seroconversion panel of patient_2021-04-28_17-33-57.sky.zip; targetedms run ID 121560
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05 Oct 2021 21:03:52,618 INFO : Updating dataFileUrls for run p24pep standard curve using recombinant protein_2021-04-28_17-45-11.sky.zip; targetedms run ID 121561
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05 Oct 2021 21:03:52,620 INFO : Updating dataFileUrl...
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05 Oct 2021 21:03:52,623 INFO : Updating dataFileUrls for run VP40_peptide_12_EBOV_2021-04-28_14-41-14.sky.zip; targetedms run ID 121562
05 Oct 2021 21:03:52,623 INFO : Updating dataFileUrl...
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05 Oct 2021 21:03:52,628 INFO : Updating dataFileUrls for run CFP-10pep result for six HIV-1 and TB co-infected patients_2021-04-28_17-57-22.sky.zip; targetedms run ID 121563
05 Oct 2021 21:03:52,629 INFO : Updating dataFileUrl...
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05 Oct 2021 21:03:52,635 INFO : Updating dataFileUrls for run HIV-1 adult cohort for p24pep assay validation_2021-04-28_14-54-12.sky.zip; targetedms run ID 121564
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05 Oct 2021 21:03:52,641 INFO : Updating dataFileUrls for run VP40_peptide_12_SUDV_2021-04-28_14-43-06.sky.zip; targetedms run ID 121565
05 Oct 2021 21:03:52,641 INFO : Updating dataFileUrl...
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05 Oct 2021 21:03:52,646 INFO : Updating dataFileUrls for run HIV-1 infant cohort for p24pep assay validation_2021-04-28_14-57-49.sky.zip; targetedms run ID 121566
05 Oct 2021 21:03:52,646 INFO : Updating dataFileUrl...
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05 Oct 2021 21:03:52,648 INFO : Updating dataFileUrl...
05 Oct 2021 21:03:52,649 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20Quantitative%20MS%20of%20antigens_7952850d-0883-103a-b54f-fea6ddf5779e/_temp__2021-10-05_20-37-23/export/xar/experiments_and_runs.xar.exploded/Run107500/HIV-1%20infant%20cohort%20for%20p24pep%20assay%20validation_2021-04-28_14-57-49/HIV-1%20infant%20cohort%20for%20p24pep%20assay%20validation.skyd
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05 Oct 2021 21:03:52,651 INFO : Hiding the Data Pipeline tab.
05 Oct 2021 21:03:53,155 INFO : Emailing submitter.
05 Oct 2021 21:03:53,646 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'