Skyline document import - Plasma_Lipid_Library_Negative_iRT_Test.sky.zip: /Panorama Public/2021/NCSU Baker Lab

Skyline document import - Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

NCSU Baker Lab - Lipid Libraries

Job Status

Created:

2021-02-27 10:58:24

Modified:

2021-09-29 08:31:59

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Skyline document import - Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

File Path:

/data/labkey/files/Panorama Public/2021/NCSU Baker Lab - Lipid Libraries/@files/Plasma_Lipid_Library_Negative_iRT_Test.sky_2021-02-27_10-58-27.log

Files:

Plasma_Lipid_Library_Negative_iRT_Test.sky_2021-02-27_10-58-27.log

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Split jobs:

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Completed Runs:

Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

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27 Feb 2021 10:58:55,813 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

27 Feb 2021 10:58:55,833 INFO : Starting to import Skyline document from Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

27 Feb 2021 10:58:55,853 INFO : Expanding Negative_Plasma_Lipid_iRT.irtdb

27 Feb 2021 10:58:55,887 INFO : Expanding Plasma_Lipids_Negative.blib

27 Feb 2021 10:58:55,897 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.skyd

27 Feb 2021 10:58:56,706 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.sky.view

27 Feb 2021 10:58:56,742 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.sky

27 Feb 2021 10:58:56,798 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.skyl

27 Feb 2021 10:58:56,868 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

27 Feb 2021 10:58:57,274 DEBUG: Starting to load chromatogram headers

27 Feb 2021 10:58:57,278 DEBUG: Done loading chromatogram headers

27 Feb 2021 10:58:57,615 INFO : Inserting Negative Plasma Lipid iRT Calibrants

27 Feb 2021 10:58:57,622 INFO : 1% Done

27 Feb 2021 10:58:57,748 INFO : 2% Done

27 Feb 2021 10:58:57,875 INFO : 3% Done

27 Feb 2021 10:58:58,004 INFO : 4% Done

27 Feb 2021 10:58:58,122 INFO : 5% Done

27 Feb 2021 10:58:58,236 INFO : 6% Done

27 Feb 2021 10:58:58,340 INFO : 7% Done

27 Feb 2021 10:58:58,498 INFO : 8% Done

27 Feb 2021 10:58:58,728 DEBUG: Total molecules inserted: 20

27 Feb 2021 10:58:58,729 INFO : Inserting Cer (Ceramide)

27 Feb 2021 10:58:58,829 INFO : 9% Done

27 Feb 2021 10:58:58,923 INFO : 10% Done

27 Feb 2021 10:58:59,019 INFO : 11% Done

27 Feb 2021 10:58:59,178 INFO : 12% Done

27 Feb 2021 10:58:59,280 INFO : 13% Done

27 Feb 2021 10:58:59,473 INFO : 14% Done

27 Feb 2021 10:58:59,572 INFO : 15% Done

27 Feb 2021 10:58:59,669 INFO : 16% Done

27 Feb 2021 10:58:59,766 INFO : 17% Done

27 Feb 2021 10:58:59,951 INFO : 18% Done

27 Feb 2021 10:59:00,051 INFO : 19% Done

27 Feb 2021 10:59:00,147 INFO : 20% Done

27 Feb 2021 10:59:00,242 INFO : 21% Done

27 Feb 2021 10:59:00,345 DEBUG: Total molecules inserted: 16

27 Feb 2021 10:59:00,346 INFO : Inserting FA (Fatty acyl)

27 Feb 2021 10:59:00,438 INFO : 22% Done

27 Feb 2021 10:59:00,559 INFO : 23% Done

27 Feb 2021 10:59:00,680 INFO : 24% Done

27 Feb 2021 10:59:00,852 INFO : 25% Done

27 Feb 2021 10:59:01,139 INFO : 26% Done

27 Feb 2021 10:59:01,242 INFO : 27% Done

27 Feb 2021 10:59:01,277 DEBUG: Inserted 50 molecules

27 Feb 2021 10:59:01,309 DEBUG: Total molecules inserted: 51

27 Feb 2021 10:59:01,310 INFO : Inserting GM3 (Ganglioside)

27 Feb 2021 10:59:01,407 INFO : 28% Done

27 Feb 2021 10:59:01,499 DEBUG: Total molecules inserted: 4

27 Feb 2021 10:59:01,500 INFO : Inserting HexCer (Glc/Glu Glycosphingolipid)

27 Feb 2021 10:59:01,508 INFO : 29% Done

27 Feb 2021 10:59:01,616 INFO : 30% Done

27 Feb 2021 10:59:01,731 INFO : 31% Done

27 Feb 2021 10:59:01,844 INFO : 32% Done

27 Feb 2021 10:59:01,974 INFO : 33% Done

27 Feb 2021 10:59:02,203 INFO : 34% Done

27 Feb 2021 10:59:02,317 INFO : 35% Done

27 Feb 2021 10:59:02,439 DEBUG: Total molecules inserted: 8

27 Feb 2021 10:59:02,440 INFO : Inserting LPC (Lyso phosphatidylcholine)

27 Feb 2021 10:59:02,451 INFO : 36% Done

27 Feb 2021 10:59:02,581 INFO : 37% Done

27 Feb 2021 10:59:02,684 INFO : 38% Done

27 Feb 2021 10:59:02,812 INFO : 39% Done

27 Feb 2021 10:59:02,939 INFO : 40% Done

27 Feb 2021 10:59:03,061 INFO : 41% Done

27 Feb 2021 10:59:03,179 DEBUG: Total molecules inserted: 26

27 Feb 2021 10:59:03,180 INFO : Inserting LPE (Lyso phosphatidylethanolamine)

27 Feb 2021 10:59:03,221 INFO : 42% Done

27 Feb 2021 10:59:03,339 INFO : 43% Done

27 Feb 2021 10:59:03,491 INFO : 44% Done

27 Feb 2021 10:59:03,547 DEBUG: Total molecules inserted: 12

27 Feb 2021 10:59:03,548 INFO : Inserting PA (Phosphatidic acid)

27 Feb 2021 10:59:03,587 DEBUG: Total molecules inserted: 1

27 Feb 2021 10:59:03,588 INFO : Inserting PC (Phosphatidylcholine)

27 Feb 2021 10:59:03,595 INFO : 45% Done

27 Feb 2021 10:59:03,736 INFO : 46% Done

27 Feb 2021 10:59:03,901 INFO : 47% Done

27 Feb 2021 10:59:04,051 INFO : 48% Done

27 Feb 2021 10:59:04,194 INFO : 49% Done

27 Feb 2021 10:59:04,278 INFO : 50% Done

27 Feb 2021 10:59:04,440 INFO : 51% Done

27 Feb 2021 10:59:04,563 INFO : 52% Done

27 Feb 2021 10:59:04,685 INFO : 53% Done

27 Feb 2021 10:59:04,815 INFO : 54% Done

27 Feb 2021 10:59:04,985 INFO : 55% Done

27 Feb 2021 10:59:05,136 INFO : 56% Done

27 Feb 2021 10:59:05,267 INFO : 57% Done

27 Feb 2021 10:59:05,405 INFO : 58% Done

27 Feb 2021 10:59:05,522 INFO : 59% Done

27 Feb 2021 10:59:05,572 INFO : 60% Done

27 Feb 2021 10:59:05,589 DEBUG: Inserted 50 molecules

27 Feb 2021 10:59:05,623 INFO : 61% Done

27 Feb 2021 10:59:05,672 DEBUG: Total molecules inserted: 54

27 Feb 2021 10:59:05,673 INFO : Inserting PC(O/P-) (Akyl/alkenyl ether phosphatidylcholine)

27 Feb 2021 10:59:05,693 INFO : 62% Done

27 Feb 2021 10:59:05,733 INFO : 63% Done

27 Feb 2021 10:59:05,805 INFO : 64% Done

27 Feb 2021 10:59:05,883 INFO : 65% Done

27 Feb 2021 10:59:05,956 INFO : 66% Done

27 Feb 2021 10:59:06,090 INFO : 67% Done

27 Feb 2021 10:59:06,219 INFO : 68% Done

27 Feb 2021 10:59:06,243 DEBUG: Total molecules inserted: 22

27 Feb 2021 10:59:06,244 INFO : Inserting PE (Phosphatidylethanolamine)

27 Feb 2021 10:59:06,402 INFO : 69% Done

27 Feb 2021 10:59:06,526 INFO : 70% Done

27 Feb 2021 10:59:06,691 INFO : 71% Done

27 Feb 2021 10:59:06,823 INFO : 72% Done

27 Feb 2021 10:59:06,939 INFO : 73% Done

27 Feb 2021 10:59:07,131 INFO : 74% Done

27 Feb 2021 10:59:07,390 INFO : 75% Done

27 Feb 2021 10:59:07,538 INFO : 76% Done

27 Feb 2021 10:59:07,746 INFO : 77% Done

27 Feb 2021 10:59:07,889 INFO : 78% Done

27 Feb 2021 10:59:07,968 DEBUG: Total molecules inserted: 44

27 Feb 2021 10:59:07,969 INFO : Inserting PE(O/P-) (Alkyl/alkenyl ether phosphatidylethanolamine)

27 Feb 2021 10:59:08,042 INFO : 79% Done

27 Feb 2021 10:59:08,150 INFO : 80% Done

27 Feb 2021 10:59:08,287 INFO : 81% Done

27 Feb 2021 10:59:08,451 INFO : 82% Done

27 Feb 2021 10:59:08,624 INFO : 83% Done

27 Feb 2021 10:59:08,782 INFO : 84% Done

27 Feb 2021 10:59:08,901 INFO : 85% Done

27 Feb 2021 10:59:09,052 INFO : 86% Done

27 Feb 2021 10:59:09,108 DEBUG: Total molecules inserted: 30

27 Feb 2021 10:59:09,109 INFO : Inserting PG (Phosphatidylglycerol)

27 Feb 2021 10:59:09,236 DEBUG: Total molecules inserted: 3

27 Feb 2021 10:59:09,237 INFO : Inserting PI (Phosphatidylinositol)

27 Feb 2021 10:59:09,244 INFO : 87% Done

27 Feb 2021 10:59:09,382 INFO : 88% Done

27 Feb 2021 10:59:09,549 INFO : 89% Done

27 Feb 2021 10:59:09,704 INFO : 90% Done

27 Feb 2021 10:59:09,788 INFO : 91% Done

27 Feb 2021 10:59:10,030 INFO : 92% Done

27 Feb 2021 10:59:10,151 DEBUG: Total molecules inserted: 19

27 Feb 2021 10:59:10,152 INFO : Inserting SM (Sphingomyelin)

27 Feb 2021 10:59:10,184 INFO : 93% Done

27 Feb 2021 10:59:10,280 INFO : 94% Done

27 Feb 2021 10:59:10,368 INFO : 95% Done

27 Feb 2021 10:59:10,537 INFO : 96% Done

27 Feb 2021 10:59:10,622 INFO : 97% Done

27 Feb 2021 10:59:10,745 INFO : 98% Done

27 Feb 2021 10:59:10,874 DEBUG: Total molecules inserted: 16

27 Feb 2021 10:59:10,877 INFO : Done parsing Skyline document.

27 Feb 2021 10:59:10,907 INFO : Creating and populating temp tables for Proportion values

27 Feb 2021 10:59:10,971 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2021 10:59:11,455 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2021 10:59:11,663 INFO : Cleaning up temp tables

27 Feb 2021 10:59:12,144 INFO : Completed import of Skyline document from Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

27 Feb 2021 10:59:12,153 INFO : 100% Done

27 Feb 2021 10:59:12,247 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'