Selevsek-lowcv.sky.zip

MacCoss - 2015-Selevsek
Protein Note/Annotations
 
Q0250COX2 SGDID:S000007281, Chr Mito from 73758-74513, Genome Release 64-1-1, Verified ORF, "Subunit II of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits"
Peptide Note/Annotations
Precursor Note/Annotations
FVVTAADVIHDFAIPSLGIK
02112.1619 
FVVTAADVIHDFAIPSLGIK
light3+705.06132112.161960.0000 
LNQVSALIQR
01140.6615 
LNQVSALIQR
light2+571.33801140.661560.0000 
R0040CREP2 SGDID:S000029676, 2-micron plasmid from 6198-5308, Genome Release 64-1-1, reverse complement, Verified ORF, "Master regulator that acts in concert with Rep1p to regulate transcript levels of the FLP1 gene that promotes plasmid copy amplification; also autoregulates levels of its own transcript"
Peptide Note/Annotations
Precursor Note/Annotations
TAYSVWDVCR
01255.5656 
TAYSVWDVCR
light2+628.79011255.565660.0000 
LVSVVTQLLTLVPPDR
01749.0400 
LVSVVTQLLTLVPPDR
light3+584.02061749.040060.0000 
LQNTITEGPK
01099.5873 
LQNTITEGPK
light2+550.80091099.587360.0000 
YAL003WEFB1 SGDID:S000000003, Chr I from 142174-142253,142620-143160, Genome Release 64-1-1, Verified ORF, "Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site"
Peptide Note/Annotations
Precursor Note/Annotations
QLNASLADK
0958.5084 
QLNASLADK
light2+480.2615958.508460.0000 
AFQSAYPEFSR
01301.6041 
AFQSAYPEFSR
light2+651.80931301.604160.0000 
WFNHIASK
01001.5083 
WFNHIASK
light2+501.76141001.508360.0000 
SIVTLDVKPWDDETNLEEMVANVK
02744.3579 
SIVTLDVKPWDDETNLEEMVANVK
light3+915.79322744.357960.0000 
SIVTLDVKPWDDETNLEEMVANVK
02760.3528 
SIVTLDVKPWDDETNLEEMVANVK
light3+921.12492760.352860.0000 
AIEMEGLTWGAHQFIPIGFGIK
02414.2457 
AIEMEGLTWGAHQFIPIGFGIK
light3+805.75582414.245760.0000 
AIEMEGLTWGAHQFIPIGFGIK
02430.2406 
AIEMEGLTWGAHQFIPIGFGIK
light3+811.08752430.240660.0000 
AIEMEGLTWGAHQFIPIGFGIKK
12542.3406 
AIEMEGLTWGAHQFIPIGFGIKK
light4+636.59242542.340660.0000 
LQINCVVEDDKVSLDDLQQSIEEDEDHVQSTDIAAMQK
14357.0214 
LQINCVVEDDKVSLDDLQQSIEEDEDHVQSTDIAAMQK
light4+1090.26264357.021460.0000 
YAL005CSSA1 SGDID:S000000004, Chr I from 141431-139503, Genome Release 64-1-1, reverse complement, Verified ORF, "ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall; 98% identical with Ssa2p, but subtle differences between the two proteins provide functional specificity with respect to propagation of yeast [URE3] prions and vacuolar-mediated degradations of gluconeogenesis enzymes"
Peptide Note/Annotations
Precursor Note/Annotations
AVGIDLGTTYSCVAHFANDRVDIIANDQGNR
13361.6110 
AVGIDLGTTYSCVAHFANDRVDIIANDQGNR
light4+841.41003361.611060.0000 
TTPSFVAFTDTER
01470.6991 
TTPSFVAFTDTER
light2+736.35681470.699160.0000 
NQAAMNPSNTVFDAK
01606.7410 
NQAAMNPSNTVFDAK
light2+804.37781606.741060.0000 
NQAAMNPSNTVFDAK
01622.7359 
NQAAMNPSNTVFDAK
light2+812.37521622.735960.0000 
NQAAMNPSNTVFDAKR
11762.8421 
NQAAMNPSNTVFDAKR
light3+588.62131762.842160.0000 
NQAAMNPSNTVFDAKR
11778.8370 
NQAAMNPSNTVFDAKR
light3+593.95291778.837060.0000 
NFNDPEVQADMK
01406.6136 
NFNDPEVQADMK
light2+704.31411406.613660.0000 
NFNDPEVQADMK
01422.6085 
NFNDPEVQADMK
light2+712.31151422.608560.0000 
KSEIFSTYADNQPGVLIQVFEGER
12726.3552 
KSEIFSTYADNQPGVLIQVFEGER
light3+909.79232726.355260.0000 
SEIFSTYADNQPGVLIQVFEGER
02598.2602 
SEIFSTYADNQPGVLIQVFEGER
light3+867.09402598.260260.0000 
NTISEAGDKLEQADKDTVTK
22162.0703 
NTISEAGDKLEQADKDTVTK
light3+721.69742162.070360.0000 
KAEETISWLDSNTTASK
11879.9163 
KAEETISWLDSNTTASK
light3+627.64611879.916360.0000 
ELQDIANPIMSK
01357.6912 
ELQDIANPIMSK
light2+679.85291357.691260.0000 
ELQDIANPIMSK
01373.6861 
ELQDIANPIMSK
light2+687.85031373.686160.0000 
LYQAGGAPGGAAGGAPGGFPGGAPPAPEAEGPTVEEVD
03374.5691 
LYQAGGAPGGAAGGAPGGFPGGAPPAPEAEGPTVEEVD
light4+844.64963374.569160.0000 
YAL007CERP2 SGDID:S000000005, Chr I from 138345-137698, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein that forms a heterotrimeric complex with Erp1p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles"
Peptide Note/Annotations
Precursor Note/Annotations
YTFCFSNNYGTALK
01684.7555 
YTFCFSNNYGTALK
light2+843.38501684.755560.0000 
YAL012WCYS3 SGDID:S000000010, Chr I from 130799-131983, Genome Release 64-1-1, Verified ORF, "Cystathionine gamma-lyase, catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine"
Peptide Note/Annotations
Precursor Note/Annotations
QSSPANPIGTYEYSR
01668.7744 
QSSPANPIGTYEYSR
light2+835.39451668.774460.0000 
SQNPNRENLER
11355.6542 
SQNPNRENLER
light3+452.89201355.654260.0000 
AVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHR
04573.2837 
AVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHR
light4+1144.32824573.283760.0000 
VANAHGVETSFTNDLLNDLPQLIK
02608.3497 
VANAHGVETSFTNDLLNDLPQLIK
light3+870.45722608.349760.0000 
VANAHGVETSFTNDLLNDLPQLIKENTK
13080.5778 
VANAHGVETSFTNDLLNDLPQLIKENTK
light4+771.15173080.577860.0000 
LVWIETPTNPTLK
01510.8395 
LVWIETPTNPTLK
light2+756.42701510.839560.0000 
YINGHSDVVLGVLATNNKPLYER
02571.3445 
YINGHSDVVLGVLATNNKPLYER
light4+643.84342571.344560.0000 
LQFLQNAIGAIPSPFDAWLTHR
02494.3121 
LQFLQNAIGAIPSPFDAWLTHR
light3+832.44462494.312160.0000 
IAEFLAADKENVVAVNYPGLK
12260.2103 
IAEFLAADKENVVAVNYPGLK
light3+754.41072260.210360.0000 
THPNYDVVLK
01184.6190 
THPNYDVVLK
light2+593.31681184.619060.0000 
DALGGGMISFR
01122.5492 
DALGGGMISFR
light2+562.28191122.549260.0000 
DALGGGMISFR
01138.5441 
DALGGGMISFR
light2+570.27931138.544160.0000 
IKGGAEAASK
1930.5134 
IKGGAEAASK
light2+466.2640930.513460.0000 
LFTLAESLGGIESLLEVPAVMTHGGIPK
02894.5463 
LFTLAESLGGIESLLEVPAVMTHGGIPK
light4+724.64392894.546360.0000 
EASGVFDDLVR
01206.5881 
EASGVFDDLVR
light2+604.30131206.588160.0000 
YAL016WTPD3 SGDID:S000000014, Chr I from 124879-126786, Genome Release 64-1-1, Verified ORF, "Regulatory subunit A of the heterotrimeric protein phosphatase 2A (PP2A), which also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and transcription by RNA polymerase III"
Peptide Note/Annotations
Precursor Note/Annotations
KLDTIALALGPER
11395.8086 
KLDTIALALGPER
light3+466.27681395.808660.0000 
IINDNQDSVK
01144.5724 
IINDNQDSVK
light2+573.29351144.572460.0000 
FLAVDCLISILK
01390.7894 
FLAVDCLISILK
light2+696.40201390.789460.0000 
GDESHTQDLLNSAVK
01612.7693 
GDESHTQDLLNSAVK
light3+538.59701612.769360.0000 
FLNDPSIILNK
01272.7078 
FLNDPSIILNK
light2+637.36121272.707860.0000 
ILPAVQNLSMDESETVR
01900.9564 
ILPAVQNLSMDESETVR
light2+951.48551900.956460.0000 
YAL017WPSK1 SGDID:S000000015, Chr I from 120225-124295, Genome Release 64-1-1, Verified ORF, "One of two (see also PSK2) PAS domain containing S/T protein kinases; coordinately regulates protein synthesis and carbohydrate metabolism and storage in response to a unknown metabolite that reflects nutritional status"
Peptide Note/Annotations
Precursor Note/Annotations
ANSLAYLPSILPEQDPLLK
02081.1409 
ANSLAYLPSILPEQDPLLK
light3+694.72092081.140960.0000 
YAL021CCCR4 SGDID:S000000019, Chr I from 113359-110846, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of the CCR4-NOT transcriptional complex, which is involved in regulation of gene expression; component of the major cytoplasmic deadenylase, which is involved in mRNA poly(A) tail shortening"
Peptide Note/Annotations
Precursor Note/Annotations
TFEEYWVPLLDK
01538.7657 
TFEEYWVPLLDK
light2+770.39011538.765760.0000 
YAL023CPMT2 SGDID:S000000021, Chr I from 108551-106272, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein Ser/Thr residues; involved in ER quality control; acts in a complex with Pmt1p, can instead interact with Pmt5; target for new antifungal"
Peptide Note/Annotations
Precursor Note/Annotations
LVGSDVGQGPR
01083.5673 
LVGSDVGQGPR
light2+542.79091083.567360.0000 
NQALGGSLLHSHIQTYPDGSNQQQVTCYGYK
03463.6215 
NQALGGSLLHSHIQTYPDGSNQQQVTCYGYK
light4+866.91273463.621560.0000 
QQEVVCMK
01020.4732 
QQEVVCMK
light2+511.24391020.473260.0000