31 May 2022 16:21:57,313 INFO : Validating data for a ProteomeXchange submission.
31 May 2022 16:21:57,314 INFO : =======================================
31 May 2022 16:21:57,470 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
31 May 2022 16:21:57,471 INFO : Validating data for experiment Id: 1312, validation Id: 62
31 May 2022 16:21:57,538 INFO : Validating data for 4 Skyline documents in 1 folders
31 May 2022 16:21:58,935 INFO : Sample file validation for Skyline document: LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:21:58,935 INFO : Found all sample files.
31 May 2022 16:21:59,910 INFO : Sample file validation for Skyline document: LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:21:59,910 INFO : Found all sample files.
31 May 2022 16:22:01,092 INFO : Sample file validation for Skyline document: LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,092 INFO : Found all sample files.
31 May 2022 16:22:01,196 INFO : Sample file validation for Skyline document: LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,196 INFO : Found all sample files.
31 May 2022 16:22:01,462 INFO : Modifications validation:
31 May 2022 16:22:01,462 INFO : VALID MODIFICATIONS:
31 May 2022 16:22:01,462 INFO : 237: Acetyl (N-term): UNIMOD:1 - Acetyl
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,462 INFO : 238: Acetyl (K): UNIMOD:1 - Acetyl
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,462 INFO : 239: Phospho (Y): UNIMOD:21 - Phospho
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,462 INFO : 240: Dioxidation (P): UNIMOD:425 - Dioxidation
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,462 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,463 INFO : 241: Oxidation (P): UNIMOD:35 - Oxidation
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,463 INFO : 242: Dehydrated (S): UNIMOD:23 - Dehydrated
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,463 INFO : 243: Delta:H(4)C(2) (K): UNIMOD:255 - Delta:H(4)C(2)
31 May 2022 16:22:01,463 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,464 INFO : 244: Dehydrated (T): UNIMOD:23 - Dehydrated
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,464 INFO : 245: Oxidation (M): UNIMOD:35 - Oxidation
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,464 INFO : 246: GlyGly (K): UNIMOD:121 - GG
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,464 INFO : 247: Phospho (ST): UNIMOD:21 - Phospho
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,464 INFO : 248: Dimethyl (R): UNIMOD:36 - Dimethyl
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,464 INFO : 249: Methyl (R): UNIMOD:34 - Methyl
31 May 2022 16:22:01,464 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,465 INFO : 250: Methyl (K): UNIMOD:34 - Methyl
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,465 INFO : 251: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_just_controls_2021-07-09_14-54-22.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeksMaxHold_minPanorama_2021-01-25_18-37-41.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeks_minPanorama_2021-01-25_17-58-07.sky.zip
31 May 2022 16:22:01,465 INFO : LR0011_Oremo-Gill_gradual2weeks3monthsHold_minPanorama_2021-01-25_17-31-44.sky.zip
31 May 2022 16:22:01,465 INFO : INVALID MODIFICATIONS (No Unimod ID):
31 May 2022 16:22:03,416 INFO : Spectral library validation:
31 May 2022 16:22:03,417 INFO : 'LR0011_Oremo-Gill' (LR0011_Oremo_Gill.blib) library in 4 Skyline documents was built with 60 raw files; 1 peptide Id files. Status: Missing spectrum files.
31 May 2022 16:22:03,417 INFO : MISSING FILES:
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20105-1%20%20200ng_1-C,5_01_2737.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20105-2%20%20200ng_1-D,5_01_2739.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20105-3%20%20200ng_1-E,5_01_2741.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20105-4%20%20200ng_1-F,5_01_2743.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20105-5%20%20200ng_1-A,6_01_2745.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20105-6%20%20200ng_1-B,6_01_2747.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20105-7%20%20200ng_1-C,6_01_2749.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20105-8%20%20200ng_1-D,6_01_2751.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2075-1%20%20200ng_1-A,8_01_2771.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2075-2%20%20200ng_1-B,8_01_2773.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2075-3%20%20200ng_1-C,8_01_2775.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2085-1%20%20200ng_1-A,5_01_2732.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2085-2%20%20200ng_1-B,4_01_2722.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2085-3%20%20200ng_1-C,4_01_2724.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2085-4%20%20200ng_1-D,4_01_2726.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2085-5%20%20200ng_1-E,4_01_2728.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2085-6%20%20200ng_1-F,4_01_2730.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2085-7%20%20200ng_1-A,4_01_2720.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%2085-8%20%20200ng_1-B,5_01_2734.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20C-1%20%20200ng_1-E,6_01_2754.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20C-2%20%20200ng_1-F,6_01_2756.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20C-3%20%20200ng_1-A,7_01_2758.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20C-4%20%20200ng_1-B,7_01_2760.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20C-5%20%20200ng_1-C,7_01_2762.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20C-6%20%20200ng_1-D,7_01_2764.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20C-7%20%20200ng_1-E,7_01_2766.mzxml
31 May 2022 16:22:03,417 INFO : Spectrum File: LR0011%20Gill%20C-8%20%20200ng_1-F,7_01_2768.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-105X-1_2-C,7_01_2695.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-105X-2_2-D,7_01_2697.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-105X-3_2-E,7_01_2699.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-105X-4_2-F,7_01_2701.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-105X-5_2-A,8_01_2703.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-105X-6_2-B,8_01_2705.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-75-5%20_2-C,4_01_2671.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-75-7_2-E,4_01_2675.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-75-8_2-F,4_01_2677.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-85X-1_2-C,6_01_2682.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-85X-2_2-D,6_01_2684.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-85X-3_2-E,6_01_2686.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-85X-4_2-F,6_01_2688.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-85X-5_2-A,7_01_2690.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-85X-6_2-B,7_01_2692.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-CX-1_2-A,5_01_2653.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-CX-2_2-B,5_01_2655.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-CX-3_2-C,5_01_2657.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-CX-4_2-D,5_01_2659.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-CX-5_2-E,5_01_2661.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-CX-6_2-F,5_01_2664.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-CX-7_2-A,6_01_2666.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0011-Gill-CX-8_2-B,6_01_2668.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0012-Gill-105-1_2-A,3_01_2642.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0012-Gill-105-2_2-B,3_01_2644.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0012-Gill-105-3_2-C,3_01_2646.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0012-Gill-105-4_2-D,3_01_2648.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0012-Gill-105-5_2-E,3_01_2650.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0012-Gill-105-6_2-F,3_01_2710.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0012-Gill-105-7_2-A,4_01_2712.mzxml
31 May 2022 16:22:03,418 INFO : Spectrum File: LR0012-Gill-105-8_2-B,4_01_2714.mzxml
31 May 2022 16:22:03,419 INFO : Data validation is complete. Status is IncompleteMetadata
31 May 2022 16:22:03,419 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'