28 Jun 2021 19:59:08,408 INFO : Copying experiment "Targeted Proteomics Using Stable Isotope Labeled Protein Fragments Enables Precise and Robust Determination of Total Apolipoprotein(a) in Human Plasma" from folder /KTH - Uhlen Lab/AstraZeneca Projects/LPA to /Panorama Public/2021/KTH Uhlen Lab - LPA
28 Jun 2021 19:59:08,408 INFO : =======================================
28 Jun 2021 19:59:08,499 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
28 Jun 2021 19:59:08,499 INFO : 
28 Jun 2021 19:59:08,499 INFO : Exporting experiment.
28 Jun 2021 20:01:56,062 INFO : 
28 Jun 2021 20:01:56,062 INFO : Experiment export completed successfully.
28 Jun 2021 20:01:56,062 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
28 Jun 2021 20:01:56,092 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
28 Jun 2021 20:01:56,092 INFO : 
28 Jun 2021 20:01:56,092 INFO : Importing experiment.
28 Jun 2021 20:01:56,096 INFO : Loading folder properties (folder type, settings and active modules)
28 Jun 2021 20:01:56,173 INFO : Done importing folder properties (folder type, settings and active modules)
28 Jun 2021 20:01:56,175 INFO : Loading etl definitions
28 Jun 2021 20:01:56,177 INFO : Loading wikis
28 Jun 2021 20:01:56,179 INFO : 0 wikis imported
28 Jun 2021 20:01:56,179 INFO : Done importing wikis
28 Jun 2021 20:01:56,179 INFO : Starting to copy files
28 Jun 2021 20:03:02,364 INFO : Copied 391 files
28 Jun 2021 20:03:02,365 INFO : Ensuring exp.data rows exist for imported files
28 Jun 2021 20:03:04,019 INFO : Starting Sample Type and Data Class import
28 Jun 2021 20:03:04,019 INFO : No types XAR file to process.
28 Jun 2021 20:03:04,019 INFO : Finished importing Sample Types and Data Classes
28 Jun 2021 20:03:04,022 INFO : Loading xar
28 Jun 2021 20:03:05,267 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip'
28 Jun 2021 20:03:05,270 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Core'
28 Jun 2021 20:03:05,272 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Output'
28 Jun 2021 20:03:05,272 DEBUG: Protocol import complete
28 Jun 2021 20:03:05,275 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8772:Targeted+Proteomics+Using+Stable+Isotope+Labeled+Protein+Fragments+Enables+Precise+and+Robust+Determination+of+Total+Apolipoprotein%28a%29+in+Human+Plasma'
28 Jun 2021 20:03:05,275 DEBUG: Experiment/Run group import complete
28 Jun 2021 20:03:05,289 DEBUG: Protocol action set import complete
28 Jun 2021 20:03:05,302 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip'
28 Jun 2021 20:03:05,310 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8772:064e2694-7541-1039-9674-3013bb9b91fd'
28 Jun 2021 20:03:05,314 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8772:064e2665-7541-1039-9674-3013bb9b91fd'
28 Jun 2021 20:03:05,314 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Core'
28 Jun 2021 20:03:05,317 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Output'
28 Jun 2021 20:03:05,318 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8772:064e26bb-7541-1039-9674-3013bb9b91fd'
28 Jun 2021 20:03:05,324 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip'
28 Jun 2021 20:03:05,329 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8772:ac66075b-93a2-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,333 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8772:ac66073f-93a2-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,333 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Core'
28 Jun 2021 20:03:05,336 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Output'
28 Jun 2021 20:03:05,336 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8772:ac660767-93a2-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,342 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip'
28 Jun 2021 20:03:05,347 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8772:0e68cda5-93a3-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,350 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8772:0e68b951-93a3-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,350 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Core'
28 Jun 2021 20:03:05,352 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Output'
28 Jun 2021 20:03:05,353 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8772:2d5b07b4-93a3-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,359 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip'
28 Jun 2021 20:03:05,364 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8772:01290b25-93a4-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,368 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8772:01290b17-93a4-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,368 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Core'
28 Jun 2021 20:03:05,370 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Output'
28 Jun 2021 20:03:05,370 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8772:01290b2c-93a4-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,377 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip'
28 Jun 2021 20:03:05,381 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8772:10b829d9-93a5-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,384 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8772:10b829cb-93a5-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,384 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Core'
28 Jun 2021 20:03:05,386 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Output'
28 Jun 2021 20:03:05,386 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8772:10b829dd-93a5-1039-8a46-fea6ddf55ba4'
28 Jun 2021 20:03:05,393 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip'
28 Jun 2021 20:03:05,397 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8772:bebb55f4-b703-1039-b76f-fea6ddf5767a'
28 Jun 2021 20:03:05,400 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8772:bebb55dd-b703-1039-b76f-fea6ddf5767a'
28 Jun 2021 20:03:05,400 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Core'
28 Jun 2021 20:03:05,402 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8772:TargetedMS.ImportSkyZip.Output'
28 Jun 2021 20:03:05,402 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8772:bebb55f7-b703-1039-b76f-fea6ddf5767a'
28 Jun 2021 20:03:05,405 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run104968/apo(a)_Repeatability_2021-04-01_19-59-25/apo(a)_Repeatability.skyd into the system
28 Jun 2021 20:03:05,405 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run104968/apo(a)_Repeatability_2021-04-01_19-59-25/apo(a)_Repeatability.skyd into the system
28 Jun 2021 20:03:05,405 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run104968/apo(a)_Repeatability_2021-04-01_19-59-25.sky.zip into the system
28 Jun 2021 20:03:05,406 INFO : Starting import from apo(a)_Repeatability_2021-04-01_19-59-25.sky.zip
28 Jun 2021 20:03:05,410 INFO : Starting to import Skyline document from apo(a)_Repeatability_2021-04-01_19-59-25.sky.zip
28 Jun 2021 20:03:05,410 INFO : Expanding apo(a)_Repeatability.skyd
28 Jun 2021 20:03:05,418 INFO : Expanding apo(a)_Repeatability.sky.view
28 Jun 2021 20:03:05,419 INFO : Expanding apo(a)_Repeatability.sky
28 Jun 2021 20:03:05,420 INFO : Expanding apo(a)_Repeatability.skyl
28 Jun 2021 20:03:05,422 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2
28 Jun 2021 20:03:05,445 INFO : 22% Done
28 Jun 2021 20:03:05,461 DEBUG: Starting to load chromatogram headers
28 Jun 2021 20:03:05,463 DEBUG: Done loading chromatogram headers
28 Jun 2021 20:03:05,525 INFO : Inserting HPRR5000605
28 Jun 2021 20:03:05,552 INFO : 98% Done
28 Jun 2021 20:03:05,718 DEBUG: Total peptides inserted: 1
28 Jun 2021 20:03:05,720 INFO : Done parsing Skyline document.
28 Jun 2021 20:03:05,775 INFO : Creating and populating temp tables for Proportion values
28 Jun 2021 20:03:05,794 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Jun 2021 20:03:05,800 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Jun 2021 20:03:05,802 INFO : Cleaning up temp tables
28 Jun 2021 20:03:06,067 INFO : Completed import of Skyline document from apo(a)_Repeatability_2021-04-01_19-59-25.sky.zip
28 Jun 2021 20:03:06,071 INFO : 100% Done
28 Jun 2021 20:03:06,078 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run104968/apo(a)_Repeatability_2021-04-01_19-59-25.sky.zip into the system
28 Jun 2021 20:03:06,078 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108227/apo(a)_reverse_standard_curve_2021-05-10_11-47-25/apo(a)_reverse_standard_curve.skyd into the system
28 Jun 2021 20:03:06,079 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108227/apo(a)_reverse_standard_curve_2021-05-10_11-47-25/apo(a)_reverse_standard_curve.skyd into the system
28 Jun 2021 20:03:06,079 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108227/apo(a)_reverse_standard_curve_2021-05-10_11-47-25.sky.zip into the system
28 Jun 2021 20:03:06,080 INFO : Starting import from apo(a)_reverse_standard_curve_2021-05-10_11-47-25.sky.zip
28 Jun 2021 20:03:06,083 INFO : Starting to import Skyline document from apo(a)_reverse_standard_curve_2021-05-10_11-47-25.sky.zip
28 Jun 2021 20:03:06,084 INFO : Expanding apo(a)_reverse_standard_curve.skyd
28 Jun 2021 20:03:06,107 INFO : Expanding apo(a)_reverse_standard_curve.sky.view
28 Jun 2021 20:03:06,108 INFO : Expanding apo(a)_reverse_standard_curve.sky
28 Jun 2021 20:03:06,112 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2
28 Jun 2021 20:03:06,119 INFO : 20% Done
28 Jun 2021 20:03:06,130 DEBUG: Starting to load chromatogram headers
28 Jun 2021 20:03:06,131 DEBUG: Done loading chromatogram headers
28 Jun 2021 20:03:06,264 INFO : Inserting HPRR5000605
28 Jun 2021 20:03:06,285 INFO : 98% Done
28 Jun 2021 20:03:06,493 DEBUG: Total peptides inserted: 1
28 Jun 2021 20:03:06,494 INFO : Done parsing Skyline document.
28 Jun 2021 20:03:06,495 INFO : Creating and populating temp tables for Proportion values
28 Jun 2021 20:03:06,505 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Jun 2021 20:03:06,515 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Jun 2021 20:03:06,519 INFO : Cleaning up temp tables
28 Jun 2021 20:03:06,746 INFO : Completed import of Skyline document from apo(a)_reverse_standard_curve_2021-05-10_11-47-25.sky.zip
28 Jun 2021 20:03:06,749 INFO : 100% Done
28 Jun 2021 20:03:06,753 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108227/apo(a)_reverse_standard_curve_2021-05-10_11-47-25.sky.zip into the system
28 Jun 2021 20:03:06,753 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108228/apo(a)_quantification_cohort_2021-05-10_11-49-33/apo(a)_quantification_cohort.skyd into the system
28 Jun 2021 20:03:06,753 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108228/apo(a)_quantification_cohort_2021-05-10_11-49-33/apo(a)_quantification_cohort.skyd into the system
28 Jun 2021 20:03:06,753 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108228/apo(a)_quantification_cohort_2021-05-10_11-49-33.sky.zip into the system
28 Jun 2021 20:03:06,754 INFO : Starting import from apo(a)_quantification_cohort_2021-05-10_11-49-33.sky.zip
28 Jun 2021 20:03:06,757 INFO : Starting to import Skyline document from apo(a)_quantification_cohort_2021-05-10_11-49-33.sky.zip
28 Jun 2021 20:03:06,778 INFO : Expanding irt_library_qtag_20190703.irtdb
28 Jun 2021 20:03:06,784 INFO : Expanding collision_energy_ah.optdb
28 Jun 2021 20:03:06,812 INFO : Expanding Assay Library_rev40.clib
28 Jun 2021 20:03:07,306 INFO : Expanding apo(a)_quantification_cohort.skyd
28 Jun 2021 20:03:07,804 INFO : Expanding apo(a)_quantification_cohort.sky.view
28 Jun 2021 20:03:07,805 INFO : Expanding apo(a)_quantification_cohort.sky
28 Jun 2021 20:03:07,887 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2
28 Jun 2021 20:03:08,799 DEBUG: Starting to load chromatogram headers
28 Jun 2021 20:03:08,812 DEBUG: Done loading chromatogram headers
28 Jun 2021 20:03:09,250 INFO : Inserting HPRR260124
28 Jun 2021 20:03:09,271 INFO : 2% Done
28 Jun 2021 20:03:09,619 INFO : 4% Done
28 Jun 2021 20:03:09,967 INFO : 6% Done
28 Jun 2021 20:03:10,242 INFO : 8% Done
28 Jun 2021 20:03:10,561 INFO : 10% Done
28 Jun 2021 20:03:10,893 INFO : 11% Done
28 Jun 2021 20:03:11,189 INFO : 13% Done
28 Jun 2021 20:03:11,452 INFO : 15% Done
28 Jun 2021 20:03:11,758 DEBUG: Total peptides inserted: 8
28 Jun 2021 20:03:11,760 INFO : Inserting HPRR350023
28 Jun 2021 20:03:11,774 INFO : 17% Done
28 Jun 2021 20:03:12,073 INFO : 19% Done
28 Jun 2021 20:03:12,359 DEBUG: Total peptides inserted: 2
28 Jun 2021 20:03:12,361 INFO : Inserting HPRR350088
28 Jun 2021 20:03:12,375 INFO : 20% Done
28 Jun 2021 20:03:12,653 INFO : 22% Done
28 Jun 2021 20:03:12,930 INFO : 24% Done
28 Jun 2021 20:03:13,198 DEBUG: Total peptides inserted: 3
28 Jun 2021 20:03:13,200 INFO : Inserting HPRR2190035
28 Jun 2021 20:03:13,215 INFO : 25% Done
28 Jun 2021 20:03:13,488 DEBUG: Total peptides inserted: 1
28 Jun 2021 20:03:13,490 INFO : Inserting HPRR2760373
28 Jun 2021 20:03:13,511 INFO : 26% Done
28 Jun 2021 20:03:13,775 INFO : 28% Done
28 Jun 2021 20:03:14,034 INFO : 30% Done
28 Jun 2021 20:03:14,274 DEBUG: Total peptides inserted: 3
28 Jun 2021 20:03:14,276 INFO : Inserting HPRR3340379
28 Jun 2021 20:03:14,288 INFO : 32% Done
28 Jun 2021 20:03:14,558 INFO : 34% Done
28 Jun 2021 20:03:14,807 INFO : 36% Done
28 Jun 2021 20:03:15,054 INFO : 37% Done
28 Jun 2021 20:03:15,317 INFO : 39% Done
28 Jun 2021 20:03:15,578 DEBUG: Total peptides inserted: 5
28 Jun 2021 20:03:15,580 INFO : Inserting HPRR3450266
28 Jun 2021 20:03:15,594 INFO : 41% Done
28 Jun 2021 20:03:15,854 INFO : 43% Done
28 Jun 2021 20:03:16,142 INFO : 45% Done
28 Jun 2021 20:03:16,412 INFO : 47% Done
28 Jun 2021 20:03:16,668 INFO : 48% Done
28 Jun 2021 20:03:16,941 INFO : 50% Done
28 Jun 2021 20:03:17,209 INFO : 52% Done
28 Jun 2021 20:03:17,470 DEBUG: Total peptides inserted: 7
28 Jun 2021 20:03:17,472 INFO : Inserting HPRR3720311
28 Jun 2021 20:03:17,485 INFO : 54% Done
28 Jun 2021 20:03:17,751 INFO : 56% Done
28 Jun 2021 20:03:18,125 INFO : 58% Done
28 Jun 2021 20:03:18,427 DEBUG: Total peptides inserted: 3
28 Jun 2021 20:03:18,429 INFO : Inserting HPRR3730489
28 Jun 2021 20:03:18,444 INFO : 60% Done
28 Jun 2021 20:03:18,732 INFO : 61% Done
28 Jun 2021 20:03:18,973 INFO : 63% Done
28 Jun 2021 20:03:19,249 INFO : 65% Done
28 Jun 2021 20:03:19,503 DEBUG: Total peptides inserted: 4
28 Jun 2021 20:03:19,505 INFO : Inserting HPRR4130067
28 Jun 2021 20:03:19,519 INFO : 67% Done
28 Jun 2021 20:03:19,787 INFO : 69% Done
28 Jun 2021 20:03:20,049 DEBUG: Total peptides inserted: 2
28 Jun 2021 20:03:20,051 INFO : Inserting HPRR4200068
28 Jun 2021 20:03:20,065 INFO : 70% Done
28 Jun 2021 20:03:20,328 INFO : 72% Done
28 Jun 2021 20:03:20,591 INFO : 74% Done
28 Jun 2021 20:03:21,061 INFO : 76% Done
28 Jun 2021 20:03:21,313 DEBUG: Total peptides inserted: 5
28 Jun 2021 20:03:21,315 INFO : Inserting HPRR4320626
28 Jun 2021 20:03:21,330 INFO : 78% Done
28 Jun 2021 20:03:21,600 INFO : 79% Done
28 Jun 2021 20:03:21,783 DEBUG: Total peptides inserted: 2
28 Jun 2021 20:03:21,785 INFO : Inserting HPRR4430020
28 Jun 2021 20:03:21,798 INFO : 81% Done
28 Jun 2021 20:03:22,040 INFO : 83% Done
28 Jun 2021 20:03:22,317 INFO : 84% Done
28 Jun 2021 20:03:22,571 DEBUG: Total peptides inserted: 3
28 Jun 2021 20:03:22,574 INFO : Inserting HPRR5000605
28 Jun 2021 20:03:22,586 INFO : 86% Done
28 Jun 2021 20:03:22,812 INFO : 88% Done
28 Jun 2021 20:03:23,081 INFO : 90% Done
28 Jun 2021 20:03:23,357 INFO : 92% Done
28 Jun 2021 20:03:23,633 INFO : 93% Done
28 Jun 2021 20:03:23,884 DEBUG: Total peptides inserted: 5
28 Jun 2021 20:03:23,886 INFO : Inserting QTag
28 Jun 2021 20:03:23,892 INFO : 94% Done
28 Jun 2021 20:03:23,970 INFO : 95% Done
28 Jun 2021 20:03:24,113 INFO : 96% Done
28 Jun 2021 20:03:24,181 INFO : 97% Done
28 Jun 2021 20:03:24,324 INFO : 98% Done
28 Jun 2021 20:03:24,387 DEBUG: Total peptides inserted: 7
28 Jun 2021 20:03:24,389 INFO : Done parsing Skyline document.
28 Jun 2021 20:03:24,390 INFO : Creating and populating temp tables for Proportion values
28 Jun 2021 20:03:24,468 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Jun 2021 20:03:24,939 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Jun 2021 20:03:25,112 INFO : Cleaning up temp tables
28 Jun 2021 20:03:25,372 INFO : Completed import of Skyline document from apo(a)_quantification_cohort_2021-05-10_11-49-33.sky.zip
28 Jun 2021 20:03:25,374 INFO : 100% Done
28 Jun 2021 20:03:25,379 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108228/apo(a)_quantification_cohort_2021-05-10_11-49-33.sky.zip into the system
28 Jun 2021 20:03:25,379 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108230/apo(a)_elisa_comparison_2021-05-10_12-03-24/apo(a)_elisa_comparison.skyd into the system
28 Jun 2021 20:03:25,380 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108230/apo(a)_elisa_comparison_2021-05-10_12-03-24/apo(a)_elisa_comparison.skyd into the system
28 Jun 2021 20:03:25,380 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108230/apo(a)_elisa_comparison_2021-05-10_12-03-24.sky.zip into the system
28 Jun 2021 20:03:25,381 INFO : Starting import from apo(a)_elisa_comparison_2021-05-10_12-03-24.sky.zip
28 Jun 2021 20:03:25,383 INFO : Starting to import Skyline document from apo(a)_elisa_comparison_2021-05-10_12-03-24.sky.zip
28 Jun 2021 20:03:25,383 INFO : Expanding apo(a)_elisa_comparison.skyd
28 Jun 2021 20:03:25,385 INFO : Expanding apo(a)_elisa_comparison.sky.view
28 Jun 2021 20:03:25,385 INFO : Expanding apo(a)_elisa_comparison.sky
28 Jun 2021 20:03:25,387 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2
28 Jun 2021 20:03:25,391 INFO : 29% Done
28 Jun 2021 20:03:25,393 DEBUG: Starting to load chromatogram headers
28 Jun 2021 20:03:25,393 DEBUG: Done loading chromatogram headers
28 Jun 2021 20:03:25,409 INFO : 44% Done
28 Jun 2021 20:03:25,411 INFO : Inserting HPRR5000605
28 Jun 2021 20:03:25,415 INFO : 98% Done
28 Jun 2021 20:03:25,439 DEBUG: Total peptides inserted: 1
28 Jun 2021 20:03:25,439 INFO : Done parsing Skyline document.
28 Jun 2021 20:03:25,440 INFO : Creating and populating temp tables for Proportion values
28 Jun 2021 20:03:25,449 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Jun 2021 20:03:25,450 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Jun 2021 20:03:25,451 INFO : Cleaning up temp tables
28 Jun 2021 20:03:25,622 INFO : Completed import of Skyline document from apo(a)_elisa_comparison_2021-05-10_12-03-24.sky.zip
28 Jun 2021 20:03:25,625 INFO : 100% Done
28 Jun 2021 20:03:25,628 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108230/apo(a)_elisa_comparison_2021-05-10_12-03-24.sky.zip into the system
28 Jun 2021 20:03:25,628 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108231/apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36/apo(a)_elisa-calibrator_quantification.skyd into the system
28 Jun 2021 20:03:25,628 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108231/apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36/apo(a)_elisa-calibrator_quantification.skyd into the system
28 Jun 2021 20:03:25,628 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108231/apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36.sky.zip into the system
28 Jun 2021 20:03:25,629 INFO : Starting import from apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36.sky.zip
28 Jun 2021 20:03:25,631 INFO : Starting to import Skyline document from apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36.sky.zip
28 Jun 2021 20:03:25,631 INFO : Expanding apo(a)_elisa-calibrator_quantification.skyd
28 Jun 2021 20:03:25,632 INFO : Expanding apo(a)_elisa-calibrator_quantification.sky.view
28 Jun 2021 20:03:25,632 INFO : Expanding apo(a)_elisa-calibrator_quantification.sky
28 Jun 2021 20:03:25,635 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2
28 Jun 2021 20:03:25,638 INFO : 39% Done
28 Jun 2021 20:03:25,639 DEBUG: Starting to load chromatogram headers
28 Jun 2021 20:03:25,639 DEBUG: Done loading chromatogram headers
28 Jun 2021 20:03:25,647 INFO : Inserting HPRR5000605
28 Jun 2021 20:03:25,650 INFO : 98% Done
28 Jun 2021 20:03:25,661 DEBUG: Total peptides inserted: 1
28 Jun 2021 20:03:25,661 INFO : Done parsing Skyline document.
28 Jun 2021 20:03:25,662 INFO : Creating and populating temp tables for Proportion values
28 Jun 2021 20:03:25,670 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Jun 2021 20:03:25,671 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Jun 2021 20:03:25,672 INFO : Cleaning up temp tables
28 Jun 2021 20:03:25,880 INFO : Completed import of Skyline document from apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36.sky.zip
28 Jun 2021 20:03:25,895 INFO : 100% Done
28 Jun 2021 20:03:25,898 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108231/apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36.sky.zip into the system
28 Jun 2021 20:03:25,898 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run112102/apo(a)_freeze-thaw_2021-06-24_12-21-59/apo(a)_freeze-thaw.skyd into the system
28 Jun 2021 20:03:25,898 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run112102/apo(a)_freeze-thaw_2021-06-24_12-21-59/apo(a)_freeze-thaw.skyd into the system
28 Jun 2021 20:03:25,898 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run112102/apo(a)_freeze-thaw_2021-06-24_12-21-59.sky.zip into the system
28 Jun 2021 20:03:25,899 INFO : Starting import from apo(a)_freeze-thaw_2021-06-24_12-21-59.sky.zip
28 Jun 2021 20:03:25,901 INFO : Starting to import Skyline document from apo(a)_freeze-thaw_2021-06-24_12-21-59.sky.zip
28 Jun 2021 20:03:25,901 INFO : Expanding apo(a)_freeze-thaw.skyd
28 Jun 2021 20:03:25,903 INFO : Expanding apo(a)_freeze-thaw.sky.view
28 Jun 2021 20:03:25,903 INFO : Expanding apo(a)_freeze-thaw.sky
28 Jun 2021 20:03:25,903 INFO : Expanding apo(a)_freeze-thaw.skyl
28 Jun 2021 20:03:25,916 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2
28 Jun 2021 20:03:25,919 INFO : 24% Done
28 Jun 2021 20:03:25,920 DEBUG: Starting to load chromatogram headers
28 Jun 2021 20:03:25,921 DEBUG: Done loading chromatogram headers
28 Jun 2021 20:03:25,932 INFO : Inserting HPRR5000605
28 Jun 2021 20:03:25,936 INFO : 98% Done
28 Jun 2021 20:03:25,955 DEBUG: Total peptides inserted: 1
28 Jun 2021 20:03:25,956 INFO : Done parsing Skyline document.
28 Jun 2021 20:03:25,987 INFO : Creating and populating temp tables for Proportion values
28 Jun 2021 20:03:25,996 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Jun 2021 20:03:25,998 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Jun 2021 20:03:25,998 INFO : Cleaning up temp tables
28 Jun 2021 20:03:26,209 INFO : Completed import of Skyline document from apo(a)_freeze-thaw_2021-06-24_12-21-59.sky.zip
28 Jun 2021 20:03:26,211 INFO : 100% Done
28 Jun 2021 20:03:26,214 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run112102/apo(a)_freeze-thaw_2021-06-24_12-21-59.sky.zip into the system
28 Jun 2021 20:03:26,237 INFO : Done importing xar
28 Jun 2021 20:03:26,239 INFO : Loading pages and webpart properties
28 Jun 2021 20:03:26,301 INFO : Done importing pages and webpart properties
28 Jun 2021 20:03:26,301 INFO : 
28 Jun 2021 20:03:26,301 INFO : Experiment import completed successfully.
28 Jun 2021 20:03:26,301 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
28 Jun 2021 20:03:26,344 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
28 Jun 2021 20:03:26,344 INFO : 
28 Jun 2021 20:03:26,344 INFO : Finishing up experiment copy.
28 Jun 2021 20:03:26,345 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
28 Jun 2021 20:03:26,347 INFO : Assigning a ProteomeXchange ID.
28 Jun 2021 20:03:27,418 INFO : Assigning a DOI.
28 Jun 2021 20:03:28,398 INFO : Assigned DOI: 10.6069/0kk2-6173
28 Jun 2021 20:03:28,402 INFO : Updating access URL to point to the new copy of the data.
28 Jun 2021 20:03:28,407 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
28 Jun 2021 20:03:28,408 INFO : Removing copy permissions given to journal.
28 Jun 2021 20:03:28,409 INFO : Adding read permissions to all users that are folder admins in the source container.
28 Jun 2021 20:03:28,420 INFO : Setting the TargetedMS folder type to 'Experimental Data'
28 Jun 2021 20:03:28,426 INFO : Updating the 'Raw Data' tab configuration
28 Jun 2021 20:03:28,429 INFO : Updating dataFileUrls for run apo(a)_Repeatability_2021-04-01_19-59-25.sky.zip; targetedms run ID 114729
28 Jun 2021 20:03:28,429 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:28,429 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run104968/apo(a)_Repeatability_2021-04-01_19-59-25.sky.zip
28 Jun 2021 20:03:28,429 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_Repeatability_2021-04-01_19-59-25.sky.zip
28 Jun 2021 20:03:28,432 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:28,432 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run104968/apo(a)_Repeatability_2021-04-01_19-59-25/apo(a)_Repeatability.skyd
28 Jun 2021 20:03:28,432 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_Repeatability_2021-04-01_19-59-25/apo(a)_Repeatability.skyd
28 Jun 2021 20:03:28,435 INFO : Updating dataFileUrls for run apo(a)_reverse_standard_curve_2021-05-10_11-47-25.sky.zip; targetedms run ID 114730
28 Jun 2021 20:03:28,435 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:28,435 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108227/apo(a)_reverse_standard_curve_2021-05-10_11-47-25.sky.zip
28 Jun 2021 20:03:28,435 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_reverse_standard_curve_2021-05-10_11-47-25.sky.zip
28 Jun 2021 20:03:28,437 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:28,437 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108227/apo(a)_reverse_standard_curve_2021-05-10_11-47-25/apo(a)_reverse_standard_curve.skyd
28 Jun 2021 20:03:28,437 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_reverse_standard_curve_2021-05-10_11-47-25/apo(a)_reverse_standard_curve.skyd
28 Jun 2021 20:03:28,439 INFO : Updating dataFileUrls for run apo(a)_quantification_cohort_2021-05-10_11-49-33.sky.zip; targetedms run ID 114731
28 Jun 2021 20:03:28,439 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:28,439 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108228/apo(a)_quantification_cohort_2021-05-10_11-49-33/apo(a)_quantification_cohort.skyd
28 Jun 2021 20:03:28,439 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_quantification_cohort_2021-05-10_11-49-33/apo(a)_quantification_cohort.skyd
28 Jun 2021 20:03:28,440 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:28,440 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108228/apo(a)_quantification_cohort_2021-05-10_11-49-33.sky.zip
28 Jun 2021 20:03:28,440 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_quantification_cohort_2021-05-10_11-49-33.sky.zip
28 Jun 2021 20:03:28,443 INFO : Updating dataFileUrls for run apo(a)_elisa_comparison_2021-05-10_12-03-24.sky.zip; targetedms run ID 114732
28 Jun 2021 20:03:28,443 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:28,443 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108230/apo(a)_elisa_comparison_2021-05-10_12-03-24/apo(a)_elisa_comparison.skyd
28 Jun 2021 20:03:28,443 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_elisa_comparison_2021-05-10_12-03-24/apo(a)_elisa_comparison.skyd
28 Jun 2021 20:03:29,676 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:29,676 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108230/apo(a)_elisa_comparison_2021-05-10_12-03-24.sky.zip
28 Jun 2021 20:03:29,676 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_elisa_comparison_2021-05-10_12-03-24.sky.zip
28 Jun 2021 20:03:29,679 INFO : Updating dataFileUrls for run apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36.sky.zip; targetedms run ID 114733
28 Jun 2021 20:03:31,230 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:31,230 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108231/apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36.sky.zip
28 Jun 2021 20:03:31,230 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36.sky.zip
28 Jun 2021 20:03:31,233 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:31,233 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run108231/apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36/apo(a)_elisa-calibrator_quantification.skyd
28 Jun 2021 20:03:31,233 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_elisa-calibrator_quantification_2021-05-10_12-18-36/apo(a)_elisa-calibrator_quantification.skyd
28 Jun 2021 20:03:31,236 INFO : Updating dataFileUrls for run apo(a)_freeze-thaw_2021-06-24_12-21-59.sky.zip; targetedms run ID 114734
28 Jun 2021 20:03:31,236 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:31,236 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run112102/apo(a)_freeze-thaw_2021-06-24_12-21-59/apo(a)_freeze-thaw.skyd
28 Jun 2021 20:03:31,237 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_freeze-thaw_2021-06-24_12-21-59/apo(a)_freeze-thaw.skyd
28 Jun 2021 20:03:31,238 INFO : Updating dataFileUrl...
28 Jun 2021 20:03:31,238 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20LPA_cd5271df-bab2-1039-b76f-fea6ddf5767a/_temp__2021-06-28_19-59-07/export/xar/experiments_and_runs.xar.exploded/Run112102/apo(a)_freeze-thaw_2021-06-24_12-21-59.sky.zip
28 Jun 2021 20:03:31,238 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/KTH%20Uhlen%20Lab%20-%20LPA/@files/apo(a)_freeze-thaw_2021-06-24_12-21-59.sky.zip
28 Jun 2021 20:03:31,256 INFO : Creating a reviewer account.
28 Jun 2021 20:03:31,521 INFO : Created reviewer with email: User panorama+reviewer42@proteinms.net
28 Jun 2021 20:03:31,532 INFO : Hiding the Data Pipeline tab.
28 Jun 2021 20:03:31,635 INFO : Emailing submitter.
28 Jun 2021 20:03:31,745 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'