03 Sep 2021 19:28:29,565 INFO : Copying experiment "Organ wise targeted mass spectrometric analysis of proteins in Labeo rohita using SRM/MRM approach" from folder /IIT Bombay - Proteomics/Organwise_SRM_ROHU to /Panorama Public/2021/IIT Bombay Proteomics - Organwise_SRM_ROHU
03 Sep 2021 19:28:29,565 INFO : =======================================
03 Sep 2021 19:28:29,813 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
03 Sep 2021 19:28:29,814 INFO : 
03 Sep 2021 19:28:29,814 INFO : Exporting experiment.
03 Sep 2021 19:29:21,927 INFO : 
03 Sep 2021 19:29:21,927 INFO : Experiment export completed successfully.
03 Sep 2021 19:29:21,927 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
03 Sep 2021 19:29:22,019 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
03 Sep 2021 19:29:22,019 INFO : 
03 Sep 2021 19:29:22,019 INFO : Importing experiment.
03 Sep 2021 19:29:22,025 INFO : Loading folder properties (folder type, settings and active modules)
03 Sep 2021 19:29:22,119 INFO : Done importing folder properties (folder type, settings and active modules)
03 Sep 2021 19:29:22,122 INFO : Loading etl definitions
03 Sep 2021 19:29:22,125 INFO : Loading wikis
03 Sep 2021 19:29:22,180 INFO : 2 wikis imported
03 Sep 2021 19:29:22,181 INFO : Done importing wikis
03 Sep 2021 19:29:22,181 INFO : Starting to copy files
03 Sep 2021 19:29:51,021 INFO : Copied 88 files
03 Sep 2021 19:29:51,021 INFO : Ensuring exp.data rows exist for imported files
03 Sep 2021 19:29:51,490 INFO : Starting Sample Type and Data Class import
03 Sep 2021 19:29:51,490 INFO : No types XAR file to process.
03 Sep 2021 19:29:51,491 INFO : Finished importing Sample Types and Data Classes
03 Sep 2021 19:29:51,494 INFO : Loading xar
03 Sep 2021 19:29:53,986 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9056:TargetedMS.ImportSkyZip'
03 Sep 2021 19:29:53,989 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9056:TargetedMS.ImportSkyZip.Core'
03 Sep 2021 19:29:53,992 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9056:TargetedMS.ImportSkyZip.Output'
03 Sep 2021 19:29:53,992 DEBUG: Protocol import complete
03 Sep 2021 19:29:53,994 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9056:Organ+wise+targeted+mass+spectrometric+analysis+of+proteins+in+Labeo+rohita+using+SRM%2FMRM+approach'
03 Sep 2021 19:29:53,994 DEBUG: Experiment/Run group import complete
03 Sep 2021 19:29:54,006 DEBUG: Protocol action set import complete
03 Sep 2021 19:29:54,025 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9056:TargetedMS.ImportSkyZip'
03 Sep 2021 19:29:54,038 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9056:caff24ce-eecc-1039-a2b1-fea6ddf522ee'
03 Sep 2021 19:29:54,043 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9056:caff2356-eecc-1039-a2b1-fea6ddf522ee'
03 Sep 2021 19:29:54,043 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9056:TargetedMS.ImportSkyZip.Core'
03 Sep 2021 19:29:54,047 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9056:TargetedMS.ImportSkyZip.Output'
03 Sep 2021 19:29:54,048 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9056:caff26e3-eecc-1039-a2b1-fea6ddf522ee'
03 Sep 2021 19:29:54,051 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Organwise_SRM_ROHU_7743478b-ef54-1039-a2b1-fea6ddf522ee/_temp__2021-09-03_19-28-29/export/xar/experiments_and_runs.xar.exploded/Run116804/Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46/Combined_organwise_SRM_ROHU_Final.skyd into the system
03 Sep 2021 19:29:54,051 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Organwise_SRM_ROHU_7743478b-ef54-1039-a2b1-fea6ddf522ee/_temp__2021-09-03_19-28-29/export/xar/experiments_and_runs.xar.exploded/Run116804/Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46/Combined_organwise_SRM_ROHU_Final.skyd into the system
03 Sep 2021 19:29:54,051 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Organwise_SRM_ROHU_7743478b-ef54-1039-a2b1-fea6ddf522ee/_temp__2021-09-03_19-28-29/export/xar/experiments_and_runs.xar.exploded/Run116804/Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46.sky.zip into the system
03 Sep 2021 19:29:54,053 INFO : Starting import from Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46.sky.zip
03 Sep 2021 19:29:54,058 INFO : Starting to import Skyline document from Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46.sky.zip
03 Sep 2021 19:29:54,061 INFO : Expanding New_LRdb_Uniprot.protdb
03 Sep 2021 19:29:56,895 INFO : Expanding Heart_Lib.blib
03 Sep 2021 19:29:57,392 INFO : Expanding Male_G_lib.blib
03 Sep 2021 19:29:57,880 INFO : Expanding Spinal_Lib.blib
03 Sep 2021 19:29:58,444 INFO : Expanding Eye_Lib.blib
03 Sep 2021 19:29:58,846 INFO : Expanding Liver_PD.blib
03 Sep 2021 19:29:59,271 INFO : Expanding Female_G_PD.blib
03 Sep 2021 19:29:59,655 INFO : Expanding Brain_lib.blib
03 Sep 2021 19:30:00,205 INFO : Expanding Embryo_PD.blib
03 Sep 2021 19:30:00,482 INFO : Expanding Kidney_lib.blib
03 Sep 2021 19:30:00,752 INFO : Expanding Prosit_combined_rohu_organ_wise_SRM.blib
03 Sep 2021 19:30:00,755 INFO : Expanding Combined_organwise_SRM_ROHU_Final.skyd
03 Sep 2021 19:30:00,800 INFO : Expanding Combined_organwise_SRM_ROHU_Final.sky.view
03 Sep 2021 19:30:00,801 INFO : Expanding Combined_organwise_SRM_ROHU_Final.sky
03 Sep 2021 19:30:00,814 INFO : Expanding Combined_organwise_SRM_ROHU_Final.skyl
03 Sep 2021 19:30:00,847 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
03 Sep 2021 19:30:00,869 INFO : 2% Done
03 Sep 2021 19:30:00,996 DEBUG: Starting to load chromatogram headers
03 Sep 2021 19:30:01,001 DEBUG: Done loading chromatogram headers
03 Sep 2021 19:30:01,128 INFO : Inserting tr|A0A498NCP9|A0A498NCP9_LABRO
03 Sep 2021 19:30:01,231 INFO : 3% Done
03 Sep 2021 19:30:01,262 DEBUG: Total peptides inserted: 3
03 Sep 2021 19:30:01,266 INFO : Inserting tr|A0A498MEJ1|A0A498MEJ1_LABRO
03 Sep 2021 19:30:01,299 INFO : 4% Done
03 Sep 2021 19:30:01,318 DEBUG: Total peptides inserted: 2
03 Sep 2021 19:30:01,321 INFO : Inserting tr|A0A498MVB4|A0A498MVB4_LABRO
03 Sep 2021 19:30:01,337 DEBUG: Total peptides inserted: 1
03 Sep 2021 19:30:01,341 INFO : Inserting tr|A0A498LWN5|A0A498LWN5_LABRO
03 Sep 2021 19:30:01,362 INFO : 5% Done
03 Sep 2021 19:30:01,435 DEBUG: Total peptides inserted: 5
03 Sep 2021 19:30:01,438 INFO : 6% Done
03 Sep 2021 19:30:01,443 INFO : Inserting tr|A0A498N3Y5|A0A498N3Y5_LABRO
03 Sep 2021 19:30:01,553 DEBUG: Total peptides inserted: 5
03 Sep 2021 19:30:01,556 INFO : Inserting tr|A0A498NT03|A0A498NT03_LABRO
03 Sep 2021 19:30:01,561 INFO : 7% Done
03 Sep 2021 19:30:01,638 DEBUG: Total peptides inserted: 3
03 Sep 2021 19:30:01,643 INFO : Inserting tr|A0A498MFQ8|A0A498MFQ8_LABRO
03 Sep 2021 19:30:01,650 INFO : 8% Done
03 Sep 2021 19:30:01,700 DEBUG: Total peptides inserted: 3
03 Sep 2021 19:30:01,702 INFO : Inserting tr|A0A498NN55|A0A498NN55_LABRO
03 Sep 2021 19:30:01,708 INFO : 9% Done
03 Sep 2021 19:30:01,760 INFO : 10% Done
03 Sep 2021 19:30:01,821 DEBUG: Total peptides inserted: 5
03 Sep 2021 19:30:01,823 INFO : Inserting tr|A0A498MFP2|A0A498MFP2_LABRO
03 Sep 2021 19:30:01,882 INFO : 11% Done
03 Sep 2021 19:30:01,916 DEBUG: Total peptides inserted: 5
03 Sep 2021 19:30:01,920 INFO : Inserting tr|A0A498P1P5|A0A498P1P5_LABRO
03 Sep 2021 19:30:01,947 INFO : 12% Done
03 Sep 2021 19:30:01,982 INFO : 13% Done
03 Sep 2021 19:30:02,045 INFO : 14% Done
03 Sep 2021 19:30:02,074 DEBUG: Total peptides inserted: 8
03 Sep 2021 19:30:02,077 INFO : Inserting tr|A0A498MAJ5|A0A498MAJ5_LABRO
03 Sep 2021 19:30:02,111 DEBUG: Total peptides inserted: 2
03 Sep 2021 19:30:02,119 INFO : Inserting tr|A0A498MD02|A0A498MD02_LABRO
03 Sep 2021 19:30:02,139 INFO : 15% Done
03 Sep 2021 19:30:02,196 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:02,200 INFO : Inserting tr|A0A498N235|A0A498N235_LABRO
03 Sep 2021 19:30:02,205 INFO : 16% Done
03 Sep 2021 19:30:02,248 INFO : 17% Done
03 Sep 2021 19:30:02,290 DEBUG: Total peptides inserted: 5
03 Sep 2021 19:30:02,292 INFO : Inserting tr|A0A498MM76|A0A498MM76_LABRO
03 Sep 2021 19:30:02,296 INFO : 18% Done
03 Sep 2021 19:30:02,362 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:02,364 INFO : Inserting tr|A0A498N4W3|A0A498N4W3_LABRO
03 Sep 2021 19:30:02,395 INFO : 19% Done
03 Sep 2021 19:30:02,416 DEBUG: Total peptides inserted: 3
03 Sep 2021 19:30:02,419 INFO : Inserting tr|A0A498MB48|A0A498MB48_LABRO
03 Sep 2021 19:30:02,454 INFO : 20% Done
03 Sep 2021 19:30:02,476 DEBUG: Total peptides inserted: 3
03 Sep 2021 19:30:02,480 INFO : Inserting tr|A0A498LMT8|A0A498LMT8_LABRO
03 Sep 2021 19:30:02,503 INFO : 21% Done
03 Sep 2021 19:30:02,568 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:02,572 INFO : Inserting tr|A0A498NL97|A0A498NL97_LABRO
03 Sep 2021 19:30:02,580 INFO : 22% Done
03 Sep 2021 19:30:02,677 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:02,680 INFO : Inserting tr|A0A498LLG8|A0A498LLG8_LABRO
03 Sep 2021 19:30:02,720 INFO : 23% Done
03 Sep 2021 19:30:02,800 INFO : 24% Done
03 Sep 2021 19:30:02,866 INFO : 25% Done
03 Sep 2021 19:30:02,925 INFO : 26% Done
03 Sep 2021 19:30:03,022 INFO : 27% Done
03 Sep 2021 19:30:03,039 DEBUG: Total peptides inserted: 18
03 Sep 2021 19:30:03,042 INFO : Inserting tr|A0A498LFT5|A0A498LFT5_LABRO
03 Sep 2021 19:30:03,075 INFO : 28% Done
03 Sep 2021 19:30:03,135 INFO : 29% Done
03 Sep 2021 19:30:03,185 INFO : 30% Done
03 Sep 2021 19:30:03,285 INFO : 31% Done
03 Sep 2021 19:30:03,340 INFO : 32% Done
03 Sep 2021 19:30:03,351 DEBUG: Total peptides inserted: 15
03 Sep 2021 19:30:03,354 INFO : Inserting tr|A0A498MBJ8|A0A498MBJ8_LABRO
03 Sep 2021 19:30:03,390 INFO : 33% Done
03 Sep 2021 19:30:03,410 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:03,412 INFO : Inserting tr|A0A498MT06|A0A498MT06_LABRO
03 Sep 2021 19:30:03,433 INFO : 34% Done
03 Sep 2021 19:30:03,527 INFO : 35% Done
03 Sep 2021 19:30:03,581 DEBUG: Total peptides inserted: 6
03 Sep 2021 19:30:03,585 INFO : Inserting tr|A0A498LEH5|A0A498LEH5_LABRO
03 Sep 2021 19:30:03,590 INFO : 36% Done
03 Sep 2021 19:30:03,641 INFO : 37% Done
03 Sep 2021 19:30:03,684 INFO : 38% Done
03 Sep 2021 19:30:03,744 DEBUG: Total peptides inserted: 9
03 Sep 2021 19:30:03,751 INFO : Inserting tr|A0A498N853|A0A498N853_LABRO
03 Sep 2021 19:30:03,781 INFO : 39% Done
03 Sep 2021 19:30:03,806 DEBUG: Total peptides inserted: 2
03 Sep 2021 19:30:03,808 INFO : Inserting tr|A0A498MPP4|A0A498MPP4_LABRO
03 Sep 2021 19:30:03,836 INFO : 40% Done
03 Sep 2021 19:30:03,887 INFO : 41% Done
03 Sep 2021 19:30:03,941 DEBUG: Total peptides inserted: 5
03 Sep 2021 19:30:03,943 INFO : Inserting tr|A0A498MUQ8|A0A498MUQ8_LABRO
03 Sep 2021 19:30:03,947 INFO : 42% Done
03 Sep 2021 19:30:04,028 INFO : 43% Done
03 Sep 2021 19:30:04,080 INFO : 44% Done
03 Sep 2021 19:30:04,123 INFO : 45% Done
03 Sep 2021 19:30:04,145 DEBUG: Total peptides inserted: 15
03 Sep 2021 19:30:04,147 INFO : Inserting tr|A0A498LLJ4|A0A498LLJ4_LABRO
03 Sep 2021 19:30:04,172 INFO : 46% Done
03 Sep 2021 19:30:04,264 INFO : 47% Done
03 Sep 2021 19:30:04,277 DEBUG: Total peptides inserted: 7
03 Sep 2021 19:30:04,280 INFO : Inserting tr|A0A498M4S7|A0A498M4S7_LABRO
03 Sep 2021 19:30:04,306 INFO : 48% Done
03 Sep 2021 19:30:04,354 INFO : 49% Done
03 Sep 2021 19:30:04,394 DEBUG: Total peptides inserted: 7
03 Sep 2021 19:30:04,401 INFO : Inserting tr|A0A498NNC6|A0A498NNC6_LABRO
03 Sep 2021 19:30:04,406 INFO : 50% Done
03 Sep 2021 19:30:04,507 INFO : 51% Done
03 Sep 2021 19:30:04,550 DEBUG: Total peptides inserted: 8
03 Sep 2021 19:30:04,552 INFO : Inserting tr|A0A498N236|A0A498N236_LABRO
03 Sep 2021 19:30:04,555 INFO : 52% Done
03 Sep 2021 19:30:04,588 INFO : 53% Done
03 Sep 2021 19:30:04,640 INFO : 54% Done
03 Sep 2021 19:30:04,755 DEBUG: Total peptides inserted: 11
03 Sep 2021 19:30:04,758 INFO : 55% Done
03 Sep 2021 19:30:04,760 INFO : Inserting tr|A0A498MWT1|A0A498MWT1_LABRO
03 Sep 2021 19:30:04,807 INFO : 56% Done
03 Sep 2021 19:30:04,848 INFO : 57% Done
03 Sep 2021 19:30:04,862 DEBUG: Total peptides inserted: 6
03 Sep 2021 19:30:04,867 INFO : Inserting tr|A0A498M8V5|A0A498M8V5_LABRO
03 Sep 2021 19:30:04,896 INFO : 58% Done
03 Sep 2021 19:30:04,938 DEBUG: Total peptides inserted: 6
03 Sep 2021 19:30:04,940 INFO : Inserting tr|A0A498LUH2|A0A498LUH2_LABRO
03 Sep 2021 19:30:04,989 DEBUG: Total peptides inserted: 3
03 Sep 2021 19:30:04,991 INFO : Inserting tr|A0A498M5S1|A0A498M5S1_LABRO
03 Sep 2021 19:30:04,996 INFO : 59% Done
03 Sep 2021 19:30:05,020 DEBUG: Total peptides inserted: 2
03 Sep 2021 19:30:05,024 INFO : Inserting tr|A0A498N6X4|A0A498N6X4_LABRO
03 Sep 2021 19:30:05,040 INFO : 60% Done
03 Sep 2021 19:30:05,079 INFO : 61% Done
03 Sep 2021 19:30:05,089 DEBUG: Total peptides inserted: 5
03 Sep 2021 19:30:05,092 INFO : Inserting tr|A0A498NMG8|A0A498NMG8_LABRO
03 Sep 2021 19:30:05,127 INFO : 62% Done
03 Sep 2021 19:30:05,203 INFO : 63% Done
03 Sep 2021 19:30:05,244 INFO : 64% Done
03 Sep 2021 19:30:05,290 INFO : 65% Done
03 Sep 2021 19:30:05,337 INFO : 66% Done
03 Sep 2021 19:30:05,368 DEBUG: Total peptides inserted: 19
03 Sep 2021 19:30:05,370 INFO : Inserting tr|A0A498NC53|A0A498NC53_LABRO
03 Sep 2021 19:30:05,427 INFO : 67% Done
03 Sep 2021 19:30:05,452 INFO : 68% Done
03 Sep 2021 19:30:05,486 DEBUG: Total peptides inserted: 9
03 Sep 2021 19:30:05,488 INFO : Inserting tr|A0A498N5J2|A0A498N5J2_LABRO
03 Sep 2021 19:30:05,491 INFO : 69% Done
03 Sep 2021 19:30:05,529 INFO : 70% Done
03 Sep 2021 19:30:05,542 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:05,543 INFO : Inserting tr|A0A498LCV7|A0A498LCV7_LABRO
03 Sep 2021 19:30:05,606 INFO : 71% Done
03 Sep 2021 19:30:05,620 DEBUG: Total peptides inserted: 6
03 Sep 2021 19:30:05,623 INFO : Inserting tr|A0A498NGC0|A0A498NGC0_LABRO
03 Sep 2021 19:30:05,651 INFO : 72% Done
03 Sep 2021 19:30:05,690 INFO : 73% Done
03 Sep 2021 19:30:05,727 DEBUG: Total peptides inserted: 8
03 Sep 2021 19:30:05,729 INFO : Inserting tr|A0A498MI91|A0A498MI91_LABRO
03 Sep 2021 19:30:05,732 INFO : 74% Done
03 Sep 2021 19:30:05,806 INFO : 75% Done
03 Sep 2021 19:30:05,841 INFO : 76% Done
03 Sep 2021 19:30:05,850 DEBUG: Total peptides inserted: 9
03 Sep 2021 19:30:05,852 INFO : Inserting tr|A0A498MER7|A0A498MER7_LABRO
03 Sep 2021 19:30:05,888 INFO : 77% Done
03 Sep 2021 19:30:05,905 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:05,907 INFO : Inserting tr|A0A498LBX2|A0A498LBX2_LABRO
03 Sep 2021 19:30:05,921 INFO : 78% Done
03 Sep 2021 19:30:05,952 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:05,954 INFO : Inserting tr|A0A498NDV2|A0A498NDV2_LABRO
03 Sep 2021 19:30:05,987 DEBUG: Total peptides inserted: 3
03 Sep 2021 19:30:05,990 INFO : Inserting tr|A0A498MXV5|A0A498MXV5_LABRO
03 Sep 2021 19:30:05,993 INFO : 79% Done
03 Sep 2021 19:30:06,031 INFO : 80% Done
03 Sep 2021 19:30:06,049 DEBUG: Total peptides inserted: 4
03 Sep 2021 19:30:06,049 INFO : Inserting peptides1
03 Sep 2021 19:30:06,067 DEBUG: Total peptides inserted: 1
03 Sep 2021 19:30:06,068 INFO : Done parsing Skyline document.
03 Sep 2021 19:30:06,076 INFO : Calculating fold changes
03 Sep 2021 19:30:06,077 DEBUG: Calculating fold change for group comparison SS vs UIS, 1 of 1
03 Sep 2021 19:30:09,159 INFO : 98% Done
03 Sep 2021 19:30:09,159 INFO : Done calculating fold changes.
03 Sep 2021 19:30:27,606 INFO : Creating and populating temp tables for Proportion values
03 Sep 2021 19:30:27,652 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Sep 2021 19:30:27,749 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Sep 2021 19:30:27,814 INFO : Cleaning up temp tables
03 Sep 2021 19:30:28,044 INFO : Completed import of Skyline document from Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46.sky.zip
03 Sep 2021 19:30:28,047 INFO : 100% Done
03 Sep 2021 19:30:28,052 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Organwise_SRM_ROHU_7743478b-ef54-1039-a2b1-fea6ddf522ee/_temp__2021-09-03_19-28-29/export/xar/experiments_and_runs.xar.exploded/Run116804/Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46.sky.zip into the system
03 Sep 2021 19:30:28,059 INFO : Done importing xar
03 Sep 2021 19:30:28,061 INFO : Loading pages and webpart properties
03 Sep 2021 19:30:28,135 INFO : Done importing pages and webpart properties
03 Sep 2021 19:30:28,135 INFO : 
03 Sep 2021 19:30:28,135 INFO : Experiment import completed successfully.
03 Sep 2021 19:30:28,135 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
03 Sep 2021 19:30:28,214 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
03 Sep 2021 19:30:28,214 INFO : 
03 Sep 2021 19:30:28,214 INFO : Finishing up experiment copy.
03 Sep 2021 19:30:28,216 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
03 Sep 2021 19:30:28,219 INFO : Copying ProteomeXchange ID from the previous copy of the data.
03 Sep 2021 19:30:28,220 INFO : Copying DOI from the previous copy of the data.
03 Sep 2021 19:30:28,223 INFO : Updating access URL to point to the new copy of the data.
03 Sep 2021 19:30:28,227 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
03 Sep 2021 19:30:28,229 INFO : Removing copy permissions given to journal.
03 Sep 2021 19:30:28,241 INFO : Adding read permissions to all users that are folder admins in the source container.
03 Sep 2021 19:30:28,243 INFO : Adding read permissions to all users that had read access to previous copy.
03 Sep 2021 19:30:28,254 INFO : Setting the TargetedMS folder type to 'Experimental Data'
03 Sep 2021 19:30:28,263 INFO : Updating the 'Raw Data' tab configuration
03 Sep 2021 19:30:28,268 INFO : Updating dataFileUrls for run Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46.sky.zip; targetedms run ID 119359
03 Sep 2021 19:30:28,269 INFO : Updating dataFileUrl...
03 Sep 2021 19:30:28,269 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Organwise_SRM_ROHU_7743478b-ef54-1039-a2b1-fea6ddf522ee/_temp__2021-09-03_19-28-29/export/xar/experiments_and_runs.xar.exploded/Run116804/Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46.sky.zip
03 Sep 2021 19:30:28,269 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20Organwise_SRM_ROHU/@files/Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46.sky.zip
03 Sep 2021 19:30:28,276 INFO : Updating dataFileUrl...
03 Sep 2021 19:30:28,276 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20Organwise_SRM_ROHU_7743478b-ef54-1039-a2b1-fea6ddf522ee/_temp__2021-09-03_19-28-29/export/xar/experiments_and_runs.xar.exploded/Run116804/Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46/Combined_organwise_SRM_ROHU_Final.skyd
03 Sep 2021 19:30:28,276 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20Organwise_SRM_ROHU/@files/Combined_organwise_SRM_ROHU_Final_2021-09-03_15-45-46/Combined_organwise_SRM_ROHU_Final.skyd
03 Sep 2021 19:30:28,280 INFO : Hiding the Data Pipeline tab.
03 Sep 2021 19:30:28,285 INFO : Deleting old container /Panorama Public/2021/IIT Bombay Proteomics - Organwise_SRM_ROHU V.1 V.1
03 Sep 2021 19:30:37,001 INFO : Emailing submitter.
03 Sep 2021 19:30:37,305 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'