| | | | | Sample (heavy/light; treatment, timepoint) | | |
| 150720_0004_Ecoli_LH_1_1_66_SW1n-Ecoli_LH_1_1_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6600 | DIA | E. coli, 1 light : 1 heavy | variable window method | |
| 150720_0005_Ecoli_LH_1_1_66_SW2n-Ecoli_LH_1_1_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6601 | DIA | E. coli, 1 light : 1 heavy | variable window method | |
| 150720_0006_Ecoli_LH_1_1_66_SW3n-Ecoli_LH_1_1_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6602 | DIA | E. coli, 1 light : 1 heavy | variable window method | |
| 150721_0004_Ecoli_LH_1_3_66_SW1-Ecoli_LH_1_3_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6603 | DIA | E. coli, 1 light : 3 heavy | variable window method | |
| 150721_0005_Ecoli_LH_1_3_66_SW2-Ecoli_LH_1_3_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6604 | DIA | E. coli, 1 light : 3 heavy | variable window method | |
| 150721_0006_Ecoli_LH_1_3_66_SW3-Ecoli_LH_1_3_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6605 | DIA | E. coli, 1 light : 3 heavy | variable window method | |
| 150722_0004_Ecoli_LH_3_1_66_SW1-Ecoli_LH_3_1_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6606 | DIA | E. coli, 3 light : 1 heavy | variable window method | |
| 150722_0005_Ecoli_LH_3_1_66_SW2-Ecoli_LH_3_1_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6607 | DIA | E. coli, 3 light : 1 heavy | variable window method | |
| 150722_0006_Ecoli_LH_3_1_66_SW3b-Ecoli_LH_3_3_66_SW3b.wiff | E. coli ratio mixtures | Sciex TripleTOF 6608 | DIA | E. coli, 3 light : 1 heavy | variable window method | |
| 150723_0004_Ecoli_LH_1_10_66_SW1-Ecoli_LH_1_10_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6609 | DIA | E. coli, 1 light : 10 heavy | variable window method | |
| 150723_0005_Ecoli_LH_1_10_66_SW2-Ecoli_LH_1_10_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6610 | DIA | E. coli, 1 light : 10 heavy | variable window method | |
| 150723_0006_Ecoli_LH_1_10_66_SW3-Ecoli_LH_1_10_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6611 | DIA | E. coli, 1 light : 10 heavy | variable window method | |
| 150723_0007_Ecoli_LH_1_10_66_SW4-Ecoli_LH_1_10_66_SW4.wiff | E. coli ratio mixtures | Sciex TripleTOF 6612 | DIA | E. coli, 1 light : 10 heavy | variable window method | |
| 150724_0004_Ecoli_LH_1_20_66_SW1-Ecoli_LH_1_20_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6613 | DIA | E. coli, 1 light : 20 heavy | variable window method | |
| 150724_0005_Ecoli_LH_1_20_66_SW2-Ecoli_LH_1_20_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6614 | DIA | E. coli, 1 light : 20 heavy | variable window method | |
| 150724_0006_Ecoli_LH_1_20_66_SW3-Ecoli_LH_1_20_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6615 | DIA | E. coli, 1 light : 20 heavy | variable window method | |
| 150724_0007_Ecoli_LH_1_20_66_SW4-Ecoli_LH_1_20_66_SW4.wiff | E. coli ratio mixtures | Sciex TripleTOF 6616 | DIA | E. coli, 1 light : 20 heavy | variable window method | |
| 150724_0014_Ecoli_LH_1_5_66_SW1-Ecoli_LH_1_5_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6617 | DIA | E. coli, 1 light : 5 heavy | variable window method | |
| 150724_0015_Ecoli_LH_1_5_66_SW2-Ecoli_LH_1_5_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6618 | DIA | E. coli, 1 light : 5 heavy | variable window method | |
| 150724_0016_Ecoli_LH_1_5_66_SW3-Ecoli_LH_1_5_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6619 | DIA | E. coli, 1 light : 5 heavy | variable window method | |
| 150724_0017_Ecoli_LH_1_5_66_SW4-Ecoli_LH_1_5_66_SW4.wiff | E. coli ratio mixtures | Sciex TripleTOF 6620 | DIA | E. coli, 1 light : 5 heavy | variable window method | |
| 150725_0014_Ecoli_LH_1_3_66_SW1-Ecoli_LH_1_3_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6621 | DIA | E. coli, 1 light : 3 heavy | variable window method | |
| 150725_0015_Ecoli_LH_1_3_66_SW2-Ecoli_LH_1_3_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6622 | DIA | E. coli, 1 light : 3 heavy | variable window method | |
| 150725_0016_Ecoli_LH_1_3_66_SW3-Ecoli_LH_1_3_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6623 | DIA | E. coli, 1 light : 3 heavy | variable window method | |
| 150725_0017_Ecoli_LH_1_3_66_SW4-Ecoli_LH_1_3_66_SW4.wiff | E. coli ratio mixtures | Sciex TripleTOF 6624 | DIA | E. coli, 1 light : 3 heavy | variable window method | |
| 150727_0014_Ecoli_LH_5_1_66_SW1-Ecoli_LH_5_1_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6625 | DIA | E. coli, 5 light : 1 heavy | variable window method | |
| 150727_0015_Ecoli_LH_5_1_66_SW2-Ecoli_LH_5_1_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6626 | DIA | E. coli, 5 light : 1 heavy | variable window method | |
| 150727_0016_Ecoli_LH_5_1_66_SW3-Ecoli_LH_5_1_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6627 | DIA | E. coli, 5 light : 1 heavy | variable window method | |
| 150727_0017_Ecoli_LH_5_1_66_SW4-Ecoli_LH_5_1_66_SW4.wiff | E. coli ratio mixtures | Sciex TripleTOF 6628 | DIA | E. coli, 5 light : 1 heavy | variable window method | |
| 150728_0014b_Ecoli_LH_10_1_66_SW1-Ecoli_LH_10_1_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6629 | DIA | E. coli, 10 light : 1 heavy | variable window method | |
| 150728_0015_Ecoli_LH_10_1_66_SW2-Ecoli_LH_10_1_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6630 | DIA | E. coli, 10 light : 1 heavy | variable window method | |
| 150728_0016_Ecoli_LH_10_1_66_SW3-Ecoli_LH_10_1_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6631 | DIA | E. coli, 10 light : 1 heavy | variable window method | |
| 150728_0017_Ecoli_LH_10_1_66_SW4-Ecoli_LH_10_1_66_SW4.wiff | E. coli ratio mixtures | Sciex TripleTOF 6632 | DIA | E. coli, 10 light : 1 heavy | variable window method | |
| 150728_0024_Ecoli_LH_20_1_66_SW1-Ecoli_LH_20_1_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6633 | DIA | E. coli, 20 light : 1 heavy | variable window method | |
| 150728_0025_Ecoli_LH_20_1_66_SW2-Ecoli_LH_20_1_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6634 | DIA | E. coli, 20 light : 1 heavy | variable window method | |
| 150728_0026_Ecoli_LH_20_1_66_SW3-Ecoli_LH_20_1_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6635 | DIA | E. coli, 20 light : 1 heavy | variable window method | |
| 150728_0027_Ecoli_LH_20_1_66_SW4-Ecoli_LH_20_1_66_SW4.wiff | E. coli ratio mixtures | Sciex TripleTOF 6636 | DIA | E. coli, 20 light : 1 heavy | variable window method | |
| 150729_0024_Ecoli_LH_3_1_66_SW1-Ecoli_LH_3_1_66_SW1.wiff | E. coli ratio mixtures | Sciex TripleTOF 6637 | DIA | E. coli, 3 light: 1 heavy | variable window method | |
| 150729_0025_Ecoli_LH_3_1_66_SW2-Ecoli_LH_3_1_66_SW2.wiff | E. coli ratio mixtures | Sciex TripleTOF 6638 | DIA | E. coli, 3 light: 1 heavy | variable window method | |
| 150729_0026_Ecoli_LH_3_1_66_SW3-Ecoli_LH_3_1_66_SW3.wiff | E. coli ratio mixtures | Sciex TripleTOF 6639 | DIA | E. coli, 3 light: 1 heavy | variable window method | |
| 150729_0027_Ecoli_LH_3_1_66_SW4-Ecoli_LH_3_1_66_SW4.wiff | E. coli ratio mixtures | Sciex TripleTOF 6640 | DIA | E. coli, 3 light: 1 heavy | variable window method | |
| 20200315_QEHFX_lkp_silacdia_heavy_dda_005_20200316162818.raw | Detection | Thermo Q-Exactive HF | DDA | HeLa, heavy | | |
| 20200315_QEHFX_lkp_silacdia_heavy_dda_011.raw | Detection | Thermo Q-Exactive HF | DDA | HeLa, heavy | | |
| 20200315_QEHFX_lkp_silacdia_heavy_dia_006.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, heavy | 75x 8mz, staggered | |
| 20200315_QEHFX_lkp_silacdia_heavy_dia_010.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, heavy | 75x 8mz, staggered | |
| 20200315_QEHFX_lkp_silacdia_heavy_dia_022.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, heavy | 75x 8mz, staggered | |
| 20200315_QEHFX_lkp_silacdia_light_dda_003.raw | Detection | Thermo Q-Exactive HF | DDA | HeLa, light | | |
| 20200315_QEHFX_lkp_silacdia_light_dda_015.raw | Detection | Thermo Q-Exactive HF | DDA | HeLa, light | | |
| 20200315_QEHFX_lkp_silacdia_light_dda_019.raw | Detection | Thermo Q-Exactive HF | DDA | HeLa, light | | |
| 20200315_QEHFX_lkp_silacdia_light_dia_004.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, light | 75x 8mz, staggered | |
| 20200315_QEHFX_lkp_silacdia_light_dia_014.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, light | 75x 8mz, staggered | |
| 20200315_QEHFX_lkp_silacdia_light_dia_020.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, light | 75x 8mz, staggered | |
| 20200315_QEHFX_lkp_silacdia_mix_dda_013.raw | Detection | Thermo Q-Exactive HF | DDA | HeLa, 50 heavy / 50 light | | |
| 20200315_QEHFX_lkp_silacdia_mix_dda_017.raw | Detection | Thermo Q-Exactive HF | DDA | HeLa, 50 heavy / 50 light | | |
| 20200315_QEHFX_lkp_silacdia_mix_dia_007.raw | Detection | Thermo Q-Exactive HF | DDA | HeLa, 50 heavy / 50 light | | RAW file mislabeled, please use metadata annotations in this file |
| 20200315_QEHFX_lkp_silacdia_mix_dia_008.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz, staggered | |
| 20200315_QEHFX_lkp_silacdia_mix_dia_012.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz, staggered | |
| 20200315_QEHFX_lkp_silacdia_mix_dia_018.raw | Detection | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz, staggered | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_25x24mzol_011.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 25x 24mz, staggered | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_25x24mzol_018.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 25x 24mz, staggered | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_25x24mzol_022.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 25x 24mz, staggered | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_50x12mz_013.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 50x 12mz | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_50x12mz_017.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 50x 12mz | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_50x12mz_020.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 50x 12mz | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_75x8mz_012.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_75x8mz_015.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_75x8mz_021.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_75x8mzol_010.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz, staggered | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_75x8mzol_016.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz, staggered | |
| 20200615_QEHFX_lkp_silacdia_windows_400-1000_75x8mzol_023.raw | DIA windowing | Thermo Q-Exactive HF | DIA | HeLa, 50 heavy / 50 light | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_A_1-0ug_DDA_032.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DDA | HeLa, heavy | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_A_1-0ug_DDA_064.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DDA | HeLa, heavy | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_A_1-0ug_DDA_103.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DDA | HeLa, heavy | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_A_1-0ug_DIA_033.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DIA | HeLa, heavy | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_A_1-0ug_DIA_063.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DIA | HeLa, heavy | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_A_1-0ug_DIA_104.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DIA | HeLa, heavy | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_B_0-7ug_DDA_031.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DDA | HeLa, 70/30 | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_B_0-7ug_DDA_061.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DDA | HeLa, 70/30 | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_B_0-7ug_DDA_102.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DDA | HeLa, 70/30 | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_B_0-7ug_DIA_030.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DIA | HeLa, 70/30 | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_B_0-7ug_DIA_062.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DIA | HeLa, 70/30 | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_B_0-7ug_DIA_101.raw | HeLa ratio mixtures | Thermo Q-Exactive HF | DIA | HeLa, 70/30 | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_01_DDA_155.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 0hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_01_DIA_156.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 0hr | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_02_DDA_128.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 2hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_02_DIA_129.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 2hr | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_03_DDA_112.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 4hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_03_DIA_113.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 4hr | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_04_DDA_154.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 8hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_04_DIA_153.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 8hr | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_05_DDA_108.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 10hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_05_DIA_109.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 10hr | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_06_DDA_132.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 24hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_06_DIA_133.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 24hr | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_07_DDA_123.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 48hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_07_DIA_124.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 48hr | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_08_DDA_131.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 72hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_08_DIA_130.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 72hr | 75x 8mz, staggered | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_09_DDA_120.raw | Bortezomib | Thermo Q-Exactive HF | DDA | HFF, DMSO, 168hr | | |
| 20200828_QEHFX_lkp_pSILAC-DIA_btz_09_DIA_119.raw | Bortezomib | Thermo Q-Exactive HF | DIA | HFF, DMSO, 168hr | 75x 8mz, staggered | |