01 Jun 2020 05:37:55,980 INFO : Copying experiment "Discovery of biomarker candidates associated with the risk of short- and long-term relapse after infliximab withdrawal in Crohn’s patients: a proteomics-based study" from folder /U of Liege - Translational Gastroenterology Lab/STORI study to /Panorama Public/2020/U of Liege - STORI study
01 Jun 2020 05:37:55,980 INFO : =======================================
01 Jun 2020 05:37:56,189 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
01 Jun 2020 05:37:56,189 INFO : 
01 Jun 2020 05:37:56,189 INFO : Exporting experiment.
01 Jun 2020 05:38:34,293 INFO : 
01 Jun 2020 05:38:34,293 INFO : Experiment export completed successfully.
01 Jun 2020 05:38:34,293 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
01 Jun 2020 05:38:34,397 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
01 Jun 2020 05:38:34,397 INFO : 
01 Jun 2020 05:38:34,397 INFO : Importing experiment.
01 Jun 2020 05:38:34,428 INFO : Loading folder properties (folder type, settings and active modules)
01 Jun 2020 05:38:35,033 INFO : Done importing folder properties (folder type, settings and active modules)
01 Jun 2020 05:38:35,038 INFO : Loading grid views
01 Jun 2020 05:38:35,091 INFO : 1 custom view imported
01 Jun 2020 05:38:35,092 INFO : Done importing grid views
01 Jun 2020 05:38:35,095 INFO : Loading etl definitions
01 Jun 2020 05:38:35,099 INFO : Loading wikis
01 Jun 2020 05:38:35,163 INFO : 1 wiki imported
01 Jun 2020 05:38:35,163 INFO : Done importing wikis
01 Jun 2020 05:38:35,163 INFO : Starting to copy files
01 Jun 2020 05:38:50,836 INFO : Copied 167 files
01 Jun 2020 05:38:50,836 INFO : Ensuring exp.data rows exist for imported files
01 Jun 2020 05:38:52,828 INFO : Loading xar
01 Jun 2020 05:39:01,138 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip'
01 Jun 2020 05:39:01,142 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Core'
01 Jun 2020 05:39:01,250 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Output'
01 Jun 2020 05:39:01,250 DEBUG: Protocol import complete
01 Jun 2020 05:39:01,262 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-7104:Discovery+of+biomarkers+associated+with+the+risk+of+short-+and+long-term+relapse+after+infliximab+withdrawal+in+Crohn%E2%80%99s+patients%3A+a+proteomics-based+study'
01 Jun 2020 05:39:01,262 DEBUG: Experiment/Run group import complete
01 Jun 2020 05:39:01,348 DEBUG: Protocol action set import complete
01 Jun 2020 05:39:01,535 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip'
01 Jun 2020 05:39:01,628 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7104:ae570abf-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,646 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7104:ae570a9f-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,646 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Core'
01 Jun 2020 05:39:01,650 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Output'
01 Jun 2020 05:39:01,650 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7104:5941ae44-8150-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,675 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip'
01 Jun 2020 05:39:01,681 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7104:ae57089b-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,698 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7104:ae570886-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,698 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Core'
01 Jun 2020 05:39:01,717 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Output'
01 Jun 2020 05:39:01,718 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7104:ae570928-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,725 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip'
01 Jun 2020 05:39:01,731 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7104:ae5705b2-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,735 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7104:ae5705a5-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,736 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Core'
01 Jun 2020 05:39:01,738 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Output'
01 Jun 2020 05:39:01,739 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7104:ae570631-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,761 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip'
01 Jun 2020 05:39:01,792 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7104:ae57037c-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,796 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7104:ae570369-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,796 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Core'
01 Jun 2020 05:39:01,800 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7104:TargetedMS.ImportSkyZip.Output'
01 Jun 2020 05:39:01,800 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7104:ae57042a-814a-1038-9976-3013bb9ba8d4'
01 Jun 2020 05:39:01,802 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86086/STORI_COHORT_2020-05-26_09-26-46/STORI_COHORT.skyd into the system
01 Jun 2020 05:39:01,802 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86086/STORI_COHORT_2020-05-26_09-26-46/STORI_COHORT.skyd into the system
01 Jun 2020 05:39:01,802 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86086/STORI_COHORT_2020-05-26_09-26-46.sky.zip into the system
01 Jun 2020 05:39:01,804 INFO : Starting import from STORI_COHORT_2020-05-26_09-26-46.sky.zip
01 Jun 2020 05:39:01,808 INFO : Starting to import Skyline document from STORI_COHORT_2020-05-26_09-26-46.sky.zip
01 Jun 2020 05:39:01,849 INFO : Expanding NIST_human_IT_2012-05-30.blib
01 Jun 2020 05:39:01,851 INFO : Expanding STORI_COHORT.skyd
01 Jun 2020 05:39:03,057 INFO : Expanding STORI_COHORT.sky.view
01 Jun 2020 05:39:03,057 INFO : Expanding STORI_COHORT.sky
01 Jun 2020 05:39:03,163 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
01 Jun 2020 05:39:04,209 INFO : Inserting sp|P00450|CERU_HUMAN
01 Jun 2020 05:39:04,243 INFO : 1% Done
01 Jun 2020 05:39:04,763 INFO : 2% Done
01 Jun 2020 05:39:05,170 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:05,232 INFO : Inserting sp|P00747|PLMN_HUMAN
01 Jun 2020 05:39:06,494 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:06,566 INFO : Inserting sp|P59665|DEF1_HUMAN
01 Jun 2020 05:39:06,629 INFO : 3% Done
01 Jun 2020 05:39:06,906 INFO : 4% Done
01 Jun 2020 05:39:07,162 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:07,219 INFO : Inserting sp|P01024|CO3_HUMAN
01 Jun 2020 05:39:07,578 INFO : 5% Done
01 Jun 2020 05:39:07,871 INFO : 6% Done
01 Jun 2020 05:39:08,249 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:08,305 INFO : Inserting sp|P02749|APOH_HUMAN
01 Jun 2020 05:39:08,961 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:09,025 INFO : Inserting sp|P02765|FETUA_HUMAN
01 Jun 2020 05:39:09,056 INFO : 7% Done
01 Jun 2020 05:39:09,355 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:09,381 INFO : Inserting sp|P02647|APOA1_HUMAN
01 Jun 2020 05:39:09,710 INFO : 8% Done
01 Jun 2020 05:39:10,066 INFO : 9% Done
01 Jun 2020 05:39:10,358 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:10,447 INFO : Inserting sp|O75882|ATRN_HUMAN
01 Jun 2020 05:39:10,886 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:10,886 INFO : Inserting P07359
01 Jun 2020 05:39:10,922 INFO : 10% Done
01 Jun 2020 05:39:11,316 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:11,371 INFO : Inserting sp|P55056|APOC4_HUMAN
01 Jun 2020 05:39:11,653 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:11,737 INFO : Inserting sp|P07358|CO8B_HUMAN
01 Jun 2020 05:39:11,931 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:12,027 INFO : Inserting sp|O00187|MASP2_HUMAN
01 Jun 2020 05:39:12,073 INFO : 11% Done
01 Jun 2020 05:39:12,401 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:12,433 INFO : Inserting sp|P02655|APOC2_HUMAN
01 Jun 2020 05:39:12,477 INFO : 12% Done
01 Jun 2020 05:39:12,809 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:12,849 INFO : Inserting sp|P02750|A2GL_HUMAN
01 Jun 2020 05:39:13,335 INFO : 13% Done
01 Jun 2020 05:39:13,753 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:13,808 INFO : Inserting sp|P06681|CO2_HUMAN
01 Jun 2020 05:39:13,845 INFO : 14% Done
01 Jun 2020 05:39:14,416 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:14,517 INFO : Inserting sp|P02760|AMBP_HUMAN
01 Jun 2020 05:39:14,536 INFO : 15% Done
01 Jun 2020 05:39:14,720 INFO : 16% Done
01 Jun 2020 05:39:14,910 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:14,980 INFO : Inserting sp|O75636|FCN3_HUMAN
01 Jun 2020 05:39:15,195 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:15,281 INFO : Inserting sp|P05156|CFAI_HUMAN
01 Jun 2020 05:39:15,297 INFO : 17% Done
01 Jun 2020 05:39:15,478 INFO : 18% Done
01 Jun 2020 05:39:15,668 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:15,689 INFO : Inserting sp|P07357|CO8A_HUMAN
01 Jun 2020 05:39:16,215 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:16,272 INFO : Inserting sp|P06276|CHLE_HUMAN
01 Jun 2020 05:39:16,318 INFO : 19% Done
01 Jun 2020 05:39:17,092 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:17,149 INFO : Inserting sp|P10643|CO7_HUMAN
01 Jun 2020 05:39:17,255 INFO : 20% Done
01 Jun 2020 05:39:17,636 INFO : 21% Done
01 Jun 2020 05:39:18,049 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:18,155 INFO : Inserting sp|P19827|ITIH1_HUMAN
01 Jun 2020 05:39:18,587 INFO : 22% Done
01 Jun 2020 05:39:19,502 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:19,567 INFO : Inserting sp|P02743|SAMP_HUMAN
01 Jun 2020 05:39:19,965 INFO : 23% Done
01 Jun 2020 05:39:20,630 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:20,710 INFO : Inserting sp|P05452|TETN_HUMAN
01 Jun 2020 05:39:20,770 INFO : 24% Done
01 Jun 2020 05:39:21,219 INFO : 25% Done
01 Jun 2020 05:39:21,576 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:21,624 INFO : Inserting sp|P02748|CO9_HUMAN
01 Jun 2020 05:39:22,045 INFO : 26% Done
01 Jun 2020 05:39:22,800 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:22,838 INFO : Inserting sp|P01031|CO5_HUMAN
01 Jun 2020 05:39:23,205 INFO : 27% Done
01 Jun 2020 05:39:23,529 INFO : 28% Done
01 Jun 2020 05:39:23,878 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:23,957 INFO : Inserting sp|P00751|CFAB_HUMAN
01 Jun 2020 05:39:24,334 INFO : 29% Done
01 Jun 2020 05:39:25,029 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:25,136 INFO : Inserting sp|P10909|CLUS_HUMAN
01 Jun 2020 05:39:25,163 INFO : 30% Done
01 Jun 2020 05:39:25,934 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:26,047 INFO : Inserting sp|P35858|ALS_HUMAN
01 Jun 2020 05:39:26,501 INFO : 31% Done
01 Jun 2020 05:39:26,841 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:26,876 INFO : Inserting sp|P13671|CO6_HUMAN
01 Jun 2020 05:39:26,903 INFO : 32% Done
01 Jun 2020 05:39:27,193 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:27,265 INFO : Inserting sp|P07996|TSP1_HUMAN
01 Jun 2020 05:39:27,519 INFO : 33% Done
01 Jun 2020 05:39:27,731 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:27,780 INFO : Inserting sp|O14791|APOL1_HUMAN
01 Jun 2020 05:39:27,816 INFO : 34% Done
01 Jun 2020 05:39:28,248 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:28,341 INFO : Inserting sp|P01011|AACT_HUMAN
01 Jun 2020 05:39:28,730 INFO : 35% Done
01 Jun 2020 05:39:29,502 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:29,541 INFO : Inserting sp|P05155|IC1_HUMAN
01 Jun 2020 05:39:29,576 INFO : 36% Done
01 Jun 2020 05:39:29,940 INFO : 37% Done
01 Jun 2020 05:39:30,743 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:30,871 INFO : Inserting sp|P04004|VTNC_HUMAN
01 Jun 2020 05:39:30,888 INFO : 38% Done
01 Jun 2020 05:39:31,333 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:31,425 INFO : Inserting sp|Q96KN2|CNDP1_HUMAN
01 Jun 2020 05:39:31,718 INFO : 39% Done
01 Jun 2020 05:39:32,261 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:32,288 INFO : Inserting sp|P19823|ITIH2_HUMAN
01 Jun 2020 05:39:32,682 INFO : 40% Done
01 Jun 2020 05:39:33,042 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:33,078 INFO : Inserting sp|P05543|THBG_HUMAN
01 Jun 2020 05:39:33,138 INFO : 41% Done
01 Jun 2020 05:39:33,579 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:33,624 INFO : Inserting sp|P36955|PEDF_HUMAN
01 Jun 2020 05:39:34,020 INFO : 42% Done
01 Jun 2020 05:39:34,707 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:35,449 INFO : Inserting sp|P00742|FA10_HUMAN
01 Jun 2020 05:39:35,759 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:35,919 INFO : Inserting sp|P06396|GELS_HUMAN
01 Jun 2020 05:39:35,937 INFO : 43% Done
01 Jun 2020 05:39:36,200 INFO : 44% Done
01 Jun 2020 05:39:36,406 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:36,694 INFO : Inserting sp|Q06033|ITIH3_HUMAN
01 Jun 2020 05:39:36,946 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:36,962 INFO : Inserting sp|P07360|CO8G_HUMAN
01 Jun 2020 05:39:37,003 INFO : 45% Done
01 Jun 2020 05:39:37,352 INFO : 46% Done
01 Jun 2020 05:39:37,767 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:37,807 INFO : Inserting sp|P29622|KAIN_HUMAN
01 Jun 2020 05:39:38,270 INFO : 47% Done
01 Jun 2020 05:39:38,468 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:38,524 INFO : Inserting sp|P02741|CRP_HUMAN
01 Jun 2020 05:39:38,560 INFO : 48% Done
01 Jun 2020 05:39:38,791 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:38,819 INFO : Inserting sp|P05546|HEP2_HUMAN
01 Jun 2020 05:39:39,081 INFO : 49% Done
01 Jun 2020 05:39:39,368 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:39,486 INFO : Inserting sp|P51884|LUM_HUMAN
01 Jun 2020 05:39:39,538 INFO : 50% Done
01 Jun 2020 05:39:40,311 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:40,356 INFO : Inserting sp|P00740|FA9_HUMAN
01 Jun 2020 05:39:41,624 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:41,799 INFO : Inserting sp|P22792|CPN2_HUMAN
01 Jun 2020 05:39:41,835 INFO : 51% Done
01 Jun 2020 05:39:42,561 INFO : 52% Done
01 Jun 2020 05:39:42,958 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:42,999 INFO : Inserting sp|P08603|CFAH_HUMAN
01 Jun 2020 05:39:43,022 INFO : 53% Done
01 Jun 2020 05:39:43,835 INFO : 54% Done
01 Jun 2020 05:39:44,204 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:44,352 INFO : Inserting sp|P35542|SAA4_HUMAN
01 Jun 2020 05:39:45,199 INFO : 55% Done
01 Jun 2020 05:39:45,578 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:45,650 INFO : Inserting sp|P0CF74|LAC6_HUMAN
01 Jun 2020 05:39:46,056 INFO : 56% Done
01 Jun 2020 05:39:46,406 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:46,468 INFO : Inserting sp|P01591|IGJ_HUMAN
01 Jun 2020 05:39:46,499 INFO : 57% Done
01 Jun 2020 05:39:47,191 INFO : 58% Done
01 Jun 2020 05:39:47,511 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:47,540 INFO : Inserting sp|P02652|APOA2_HUMAN
01 Jun 2020 05:39:47,888 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:47,926 INFO : Inserting sp|P02787|TRFE_HUMAN
01 Jun 2020 05:39:48,295 INFO : 59% Done
01 Jun 2020 05:39:48,680 INFO : 60% Done
01 Jun 2020 05:39:49,020 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:49,074 INFO : Inserting sp|P11226|MBL2_HUMAN
01 Jun 2020 05:39:49,473 INFO : 61% Done
01 Jun 2020 05:39:49,803 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:49,830 INFO : Inserting sp|P01625|KV402_HUMAN
01 Jun 2020 05:39:49,861 INFO : 62% Done
01 Jun 2020 05:39:50,926 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:51,729 INFO : Inserting sp|P14151|LYAM1_HUMAN
01 Jun 2020 05:39:51,757 INFO : 63% Done
01 Jun 2020 05:39:52,112 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:52,125 INFO : Inserting sp|P01765|HV304_HUMAN
01 Jun 2020 05:39:52,517 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:52,559 INFO : Inserting sp|P0DJI8|SAA1_HUMAN
01 Jun 2020 05:39:52,615 INFO : 64% Done
01 Jun 2020 05:39:52,979 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:39:53,027 INFO : Inserting sp|P00924|ENO1_YEAST
01 Jun 2020 05:39:53,395 INFO : 65% Done
01 Jun 2020 05:39:53,744 INFO : 66% Done
01 Jun 2020 05:39:54,824 DEBUG: Total peptides inserted: 5
01 Jun 2020 05:39:54,916 INFO : Inserting sp|P0C0L5|CO4B_HUMAN
01 Jun 2020 05:39:54,926 INFO : 67% Done
01 Jun 2020 05:39:55,679 INFO : 68% Done
01 Jun 2020 05:39:56,001 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:56,083 INFO : Inserting sp|P37802|TAGL2_HUMAN
01 Jun 2020 05:39:56,121 INFO : 69% Done
01 Jun 2020 05:39:56,560 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:56,589 INFO : Inserting sp|P02656|APOC3_HUMAN
01 Jun 2020 05:39:56,598 INFO : 70% Done
01 Jun 2020 05:39:57,251 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:57,293 INFO : Inserting sp|P04278|SHBG_HUMAN
01 Jun 2020 05:39:57,318 INFO : 71% Done
01 Jun 2020 05:39:57,525 INFO : 72% Done
01 Jun 2020 05:39:57,797 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:57,849 INFO : Inserting sp|P00738|HPT_HUMAN
01 Jun 2020 05:39:58,280 INFO : 73% Done
01 Jun 2020 05:39:58,609 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:39:58,675 INFO : Inserting sp|P02763|A1AG1_HUMAN
01 Jun 2020 05:39:58,716 INFO : 74% Done
01 Jun 2020 05:39:59,731 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:39:59,829 INFO : Inserting sp|P00739|HPTR_HUMAN
01 Jun 2020 05:40:00,172 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:00,205 INFO : Inserting sp|P01876|IGHA1_HUMAN
01 Jun 2020 05:40:00,274 INFO : 75% Done
01 Jun 2020 05:40:00,644 INFO : 76% Done
01 Jun 2020 05:40:01,364 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:01,432 INFO : Inserting sp|P20851|C4BPB_HUMAN
01 Jun 2020 05:40:01,467 INFO : 77% Done
01 Jun 2020 05:40:01,799 INFO : 78% Done
01 Jun 2020 05:40:02,041 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:02,084 INFO : Inserting sp|P04196|HRG_HUMAN
01 Jun 2020 05:40:02,519 INFO : 79% Done
01 Jun 2020 05:40:02,712 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:02,782 INFO : Inserting sp|P20742|PZP_HUMAN
01 Jun 2020 05:40:03,026 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:03,070 INFO : Inserting sp|P36980|FHR2_HUMAN
01 Jun 2020 05:40:03,106 INFO : 80% Done
01 Jun 2020 05:40:03,328 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:03,328 INFO : Done parsing Skyline document.
01 Jun 2020 05:40:03,337 INFO : Calculating fold changes
01 Jun 2020 05:40:03,337 DEBUG: Calculating fold change for group comparison NP, 1 of 1
01 Jun 2020 05:40:11,007 INFO : 98% Done
01 Jun 2020 05:40:11,007 INFO : Done calculating fold changes.
01 Jun 2020 05:40:11,011 INFO : Creating and populating temp tables for Proportion values
01 Jun 2020 05:40:11,417 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
01 Jun 2020 05:40:13,023 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
01 Jun 2020 05:40:13,974 INFO : Cleaning up temp tables
01 Jun 2020 05:40:14,370 INFO : Completed import of Skyline document from STORI_COHORT_2020-05-26_09-26-46.sky.zip
01 Jun 2020 05:40:14,372 INFO : 100% Done
01 Jun 2020 05:40:14,384 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86086/STORI_COHORT_2020-05-26_09-26-46.sky.zip into the system
01 Jun 2020 05:40:14,384 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86085/Intra-day%20QC_2020-05-26_09-25-29/Intra-day%20QC.skyd into the system
01 Jun 2020 05:40:14,385 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86085/Intra-day%20QC_2020-05-26_09-25-29/Intra-day%20QC.skyd into the system
01 Jun 2020 05:40:14,385 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86085/Intra-day%20QC_2020-05-26_09-25-29.sky.zip into the system
01 Jun 2020 05:40:14,389 INFO : Starting import from Intra-day QC_2020-05-26_09-25-29.sky.zip
01 Jun 2020 05:40:14,396 INFO : Starting to import Skyline document from Intra-day QC_2020-05-26_09-25-29.sky.zip
01 Jun 2020 05:40:14,402 INFO : Expanding NIST_human_IT_2012-05-30.blib
01 Jun 2020 05:40:14,406 INFO : Expanding Intra-day QC.skyd
01 Jun 2020 05:40:14,586 INFO : Expanding Intra-day QC.sky.view
01 Jun 2020 05:40:14,586 INFO : Expanding Intra-day QC.sky
01 Jun 2020 05:40:14,611 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
01 Jun 2020 05:40:14,615 INFO : 1% Done
01 Jun 2020 05:40:15,036 INFO : Inserting sp|P00450|CERU_HUMAN
01 Jun 2020 05:40:15,092 INFO : 2% Done
01 Jun 2020 05:40:15,106 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:15,110 INFO : Inserting sp|P00747|PLMN_HUMAN
01 Jun 2020 05:40:15,138 INFO : 3% Done
01 Jun 2020 05:40:15,152 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:15,155 INFO : Inserting sp|P59665|DEF1_HUMAN
01 Jun 2020 05:40:15,170 INFO : 4% Done
01 Jun 2020 05:40:15,240 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:15,244 INFO : Inserting sp|P01024|CO3_HUMAN
01 Jun 2020 05:40:15,245 INFO : 5% Done
01 Jun 2020 05:40:15,279 INFO : 6% Done
01 Jun 2020 05:40:15,312 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:15,316 INFO : Inserting sp|P02749|APOH_HUMAN
01 Jun 2020 05:40:15,331 INFO : 7% Done
01 Jun 2020 05:40:15,345 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:15,349 INFO : Inserting sp|P02765|FETUA_HUMAN
01 Jun 2020 05:40:15,363 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:15,367 INFO : Inserting sp|P02647|APOA1_HUMAN
01 Jun 2020 05:40:15,369 INFO : 8% Done
01 Jun 2020 05:40:15,396 INFO : 9% Done
01 Jun 2020 05:40:15,409 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:15,413 INFO : Inserting sp|O75882|ATRN_HUMAN
01 Jun 2020 05:40:15,414 INFO : 10% Done
01 Jun 2020 05:40:15,428 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:15,428 INFO : Inserting P07359
01 Jun 2020 05:40:15,441 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:15,445 INFO : Inserting sp|P55056|APOC4_HUMAN
01 Jun 2020 05:40:15,459 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:15,462 INFO : Inserting sp|P07358|CO8B_HUMAN
01 Jun 2020 05:40:15,463 INFO : 11% Done
01 Jun 2020 05:40:15,476 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:15,479 INFO : Inserting sp|O00187|MASP2_HUMAN
01 Jun 2020 05:40:15,493 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:15,493 INFO : 12% Done
01 Jun 2020 05:40:15,496 INFO : Inserting sp|P02655|APOC2_HUMAN
01 Jun 2020 05:40:15,578 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:15,587 INFO : Inserting sp|P02750|A2GL_HUMAN
01 Jun 2020 05:40:15,589 INFO : 13% Done
01 Jun 2020 05:40:15,653 INFO : 14% Done
01 Jun 2020 05:40:15,684 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:15,692 INFO : Inserting sp|P06681|CO2_HUMAN
01 Jun 2020 05:40:15,758 INFO : 15% Done
01 Jun 2020 05:40:15,789 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:15,798 INFO : Inserting sp|P02760|AMBP_HUMAN
01 Jun 2020 05:40:15,800 INFO : 16% Done
01 Jun 2020 05:40:15,864 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:15,873 INFO : Inserting sp|O75636|FCN3_HUMAN
01 Jun 2020 05:40:15,875 INFO : 17% Done
01 Jun 2020 05:40:15,906 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:15,914 INFO : Inserting sp|P05156|CFAI_HUMAN
01 Jun 2020 05:40:15,916 INFO : 18% Done
01 Jun 2020 05:40:15,980 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:15,989 INFO : Inserting sp|P07357|CO8A_HUMAN
01 Jun 2020 05:40:16,053 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:16,062 INFO : Inserting sp|P06276|CHLE_HUMAN
01 Jun 2020 05:40:16,064 INFO : 19% Done
01 Jun 2020 05:40:16,109 INFO : 20% Done
01 Jun 2020 05:40:16,140 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:16,148 INFO : Inserting sp|P10643|CO7_HUMAN
01 Jun 2020 05:40:16,182 INFO : 21% Done
01 Jun 2020 05:40:16,213 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:16,221 INFO : Inserting sp|P19827|ITIH1_HUMAN
01 Jun 2020 05:40:16,223 INFO : 22% Done
01 Jun 2020 05:40:16,317 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:16,326 INFO : Inserting sp|P02743|SAMP_HUMAN
01 Jun 2020 05:40:16,329 INFO : 23% Done
01 Jun 2020 05:40:16,395 INFO : 24% Done
01 Jun 2020 05:40:16,428 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:16,437 INFO : Inserting sp|P05452|TETN_HUMAN
01 Jun 2020 05:40:16,439 INFO : 25% Done
01 Jun 2020 05:40:16,507 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:16,516 INFO : Inserting sp|P02748|CO9_HUMAN
01 Jun 2020 05:40:16,518 INFO : 26% Done
01 Jun 2020 05:40:16,619 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:16,626 INFO : Inserting sp|P01031|CO5_HUMAN
01 Jun 2020 05:40:16,629 INFO : 27% Done
01 Jun 2020 05:40:16,684 INFO : 28% Done
01 Jun 2020 05:40:16,712 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:16,719 INFO : Inserting sp|P00751|CFAB_HUMAN
01 Jun 2020 05:40:16,721 INFO : 29% Done
01 Jun 2020 05:40:16,780 INFO : 30% Done
01 Jun 2020 05:40:16,808 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:16,815 INFO : Inserting sp|P10909|CLUS_HUMAN
01 Jun 2020 05:40:16,871 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:16,878 INFO : Inserting sp|P35858|ALS_HUMAN
01 Jun 2020 05:40:16,880 INFO : 31% Done
01 Jun 2020 05:40:16,908 INFO : 32% Done
01 Jun 2020 05:40:16,935 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:16,942 INFO : Inserting sp|P13671|CO6_HUMAN
01 Jun 2020 05:40:16,970 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:16,977 INFO : Inserting sp|P07996|TSP1_HUMAN
01 Jun 2020 05:40:16,979 INFO : 33% Done
01 Jun 2020 05:40:17,006 INFO : 34% Done
01 Jun 2020 05:40:17,033 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:17,040 INFO : Inserting sp|O14791|APOL1_HUMAN
01 Jun 2020 05:40:17,102 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:17,110 INFO : Inserting sp|P01011|AACT_HUMAN
01 Jun 2020 05:40:17,112 INFO : 35% Done
01 Jun 2020 05:40:17,176 INFO : 36% Done
01 Jun 2020 05:40:17,207 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:17,215 INFO : Inserting sp|P05155|IC1_HUMAN
01 Jun 2020 05:40:17,249 INFO : 37% Done
01 Jun 2020 05:40:17,281 INFO : 38% Done
01 Jun 2020 05:40:17,312 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:17,320 INFO : Inserting sp|P04004|VTNC_HUMAN
01 Jun 2020 05:40:17,386 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:17,394 INFO : Inserting sp|Q96KN2|CNDP1_HUMAN
01 Jun 2020 05:40:17,396 INFO : 39% Done
01 Jun 2020 05:40:17,459 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:17,467 INFO : Inserting sp|P19823|ITIH2_HUMAN
01 Jun 2020 05:40:17,469 INFO : 40% Done
01 Jun 2020 05:40:17,501 INFO : 41% Done
01 Jun 2020 05:40:17,532 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:17,540 INFO : Inserting sp|P05543|THBG_HUMAN
01 Jun 2020 05:40:17,573 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:17,581 INFO : Inserting sp|P36955|PEDF_HUMAN
01 Jun 2020 05:40:17,584 INFO : 42% Done
01 Jun 2020 05:40:17,678 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:17,686 INFO : Inserting sp|P00742|FA10_HUMAN
01 Jun 2020 05:40:17,689 INFO : 43% Done
01 Jun 2020 05:40:17,720 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:17,728 INFO : Inserting sp|P06396|GELS_HUMAN
01 Jun 2020 05:40:17,761 INFO : 44% Done
01 Jun 2020 05:40:17,792 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:17,801 INFO : Inserting sp|Q06033|ITIH3_HUMAN
01 Jun 2020 05:40:17,803 INFO : 45% Done
01 Jun 2020 05:40:17,834 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:17,842 INFO : Inserting sp|P07360|CO8G_HUMAN
01 Jun 2020 05:40:17,844 INFO : 46% Done
01 Jun 2020 05:40:17,939 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:17,947 INFO : Inserting sp|P29622|KAIN_HUMAN
01 Jun 2020 05:40:17,981 INFO : 47% Done
01 Jun 2020 05:40:18,015 INFO : 48% Done
01 Jun 2020 05:40:18,046 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:18,054 INFO : Inserting sp|P02741|CRP_HUMAN
01 Jun 2020 05:40:18,087 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:18,095 INFO : Inserting sp|P05546|HEP2_HUMAN
01 Jun 2020 05:40:18,097 INFO : 49% Done
01 Jun 2020 05:40:18,160 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:18,168 INFO : Inserting sp|P51884|LUM_HUMAN
01 Jun 2020 05:40:18,170 INFO : 50% Done
01 Jun 2020 05:40:18,233 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:18,241 INFO : Inserting sp|P00740|FA9_HUMAN
01 Jun 2020 05:40:18,274 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:18,274 INFO : 51% Done
01 Jun 2020 05:40:18,282 INFO : Inserting sp|P22792|CPN2_HUMAN
01 Jun 2020 05:40:18,316 INFO : 52% Done
01 Jun 2020 05:40:18,379 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:18,379 INFO : 53% Done
01 Jun 2020 05:40:18,388 INFO : Inserting sp|P08603|CFAH_HUMAN
01 Jun 2020 05:40:18,422 INFO : 54% Done
01 Jun 2020 05:40:18,485 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:18,493 INFO : Inserting sp|P35542|SAA4_HUMAN
01 Jun 2020 05:40:18,528 INFO : 55% Done
01 Jun 2020 05:40:18,595 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:18,604 INFO : Inserting sp|P0CF74|LAC6_HUMAN
01 Jun 2020 05:40:18,606 INFO : 56% Done
01 Jun 2020 05:40:18,690 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:18,698 INFO : Inserting sp|P01591|IGJ_HUMAN
01 Jun 2020 05:40:18,701 INFO : 57% Done
01 Jun 2020 05:40:18,733 INFO : 58% Done
01 Jun 2020 05:40:18,792 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:18,800 INFO : Inserting sp|P02652|APOA2_HUMAN
01 Jun 2020 05:40:18,832 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:18,840 INFO : Inserting sp|P02787|TRFE_HUMAN
01 Jun 2020 05:40:18,842 INFO : 59% Done
01 Jun 2020 05:40:18,917 INFO : 60% Done
01 Jun 2020 05:40:18,951 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:18,960 INFO : Inserting sp|P11226|MBL2_HUMAN
01 Jun 2020 05:40:18,962 INFO : 61% Done
01 Jun 2020 05:40:19,028 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:19,035 INFO : Inserting sp|P01625|KV402_HUMAN
01 Jun 2020 05:40:19,037 INFO : 62% Done
01 Jun 2020 05:40:19,128 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:19,136 INFO : Inserting sp|P14151|LYAM1_HUMAN
01 Jun 2020 05:40:19,139 INFO : 63% Done
01 Jun 2020 05:40:19,168 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:19,174 INFO : Inserting sp|P01765|HV304_HUMAN
01 Jun 2020 05:40:19,205 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:19,213 INFO : Inserting sp|P0DJI8|SAA1_HUMAN
01 Jun 2020 05:40:19,215 INFO : 64% Done
01 Jun 2020 05:40:19,246 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:19,255 INFO : Inserting sp|P00924|ENO1_YEAST
01 Jun 2020 05:40:19,256 INFO : 65% Done
01 Jun 2020 05:40:19,315 INFO : 66% Done
01 Jun 2020 05:40:19,416 DEBUG: Total peptides inserted: 5
01 Jun 2020 05:40:19,426 INFO : Inserting sp|P0C0L5|CO4B_HUMAN
01 Jun 2020 05:40:19,428 INFO : 67% Done
01 Jun 2020 05:40:19,462 INFO : 68% Done
01 Jun 2020 05:40:19,527 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:19,535 INFO : Inserting sp|P37802|TAGL2_HUMAN
01 Jun 2020 05:40:19,537 INFO : 69% Done
01 Jun 2020 05:40:19,602 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:19,611 INFO : Inserting sp|P02656|APOC3_HUMAN
01 Jun 2020 05:40:19,613 INFO : 70% Done
01 Jun 2020 05:40:19,710 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:19,718 INFO : Inserting sp|P04278|SHBG_HUMAN
01 Jun 2020 05:40:19,721 INFO : 71% Done
01 Jun 2020 05:40:19,756 INFO : 72% Done
01 Jun 2020 05:40:19,804 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:19,813 INFO : Inserting sp|P00738|HPT_HUMAN
01 Jun 2020 05:40:19,849 INFO : 73% Done
01 Jun 2020 05:40:19,916 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:19,925 INFO : Inserting sp|P02763|A1AG1_HUMAN
01 Jun 2020 05:40:19,928 INFO : 74% Done
01 Jun 2020 05:40:20,020 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:20,028 INFO : Inserting sp|P00739|HPTR_HUMAN
01 Jun 2020 05:40:20,030 INFO : 75% Done
01 Jun 2020 05:40:20,059 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:20,066 INFO : Inserting sp|P01876|IGHA1_HUMAN
01 Jun 2020 05:40:20,098 INFO : 76% Done
01 Jun 2020 05:40:20,175 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:20,184 INFO : Inserting sp|P20851|C4BPB_HUMAN
01 Jun 2020 05:40:20,186 INFO : 77% Done
01 Jun 2020 05:40:20,221 INFO : 78% Done
01 Jun 2020 05:40:20,253 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:20,261 INFO : Inserting sp|P04196|HRG_HUMAN
01 Jun 2020 05:40:20,354 INFO : 79% Done
01 Jun 2020 05:40:20,387 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:20,395 INFO : Inserting sp|P20742|PZP_HUMAN
01 Jun 2020 05:40:20,397 INFO : 80% Done
01 Jun 2020 05:40:20,426 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:20,434 INFO : Inserting sp|P36980|FHR2_HUMAN
01 Jun 2020 05:40:20,465 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:20,466 INFO : Done parsing Skyline document.
01 Jun 2020 05:40:20,471 INFO : Calculating fold changes
01 Jun 2020 05:40:20,472 DEBUG: Calculating fold change for group comparison NP, 1 of 1
01 Jun 2020 05:40:23,798 INFO : 98% Done
01 Jun 2020 05:40:23,798 INFO : Done calculating fold changes.
01 Jun 2020 05:40:23,800 INFO : Creating and populating temp tables for Proportion values
01 Jun 2020 05:40:23,845 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
01 Jun 2020 05:40:23,985 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
01 Jun 2020 05:40:24,040 INFO : Cleaning up temp tables
01 Jun 2020 05:40:24,457 INFO : Completed import of Skyline document from Intra-day QC_2020-05-26_09-25-29.sky.zip
01 Jun 2020 05:40:24,459 INFO : 100% Done
01 Jun 2020 05:40:24,465 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86085/Intra-day%20QC_2020-05-26_09-25-29.sky.zip into the system
01 Jun 2020 05:40:24,465 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86084/Inter-day%20QC_2020-05-26_09-23-53/Inter-day%20QC.skyd into the system
01 Jun 2020 05:40:24,466 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86084/Inter-day%20QC_2020-05-26_09-23-53/Inter-day%20QC.skyd into the system
01 Jun 2020 05:40:24,466 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86084/Inter-day%20QC_2020-05-26_09-23-53.sky.zip into the system
01 Jun 2020 05:40:24,468 INFO : Starting import from Inter-day QC_2020-05-26_09-23-53.sky.zip
01 Jun 2020 05:40:24,471 INFO : Starting to import Skyline document from Inter-day QC_2020-05-26_09-23-53.sky.zip
01 Jun 2020 05:40:24,475 INFO : Expanding NIST_human_IT_2012-05-30.blib
01 Jun 2020 05:40:24,476 INFO : Expanding Inter-day QC.skyd
01 Jun 2020 05:40:24,535 INFO : Expanding Inter-day QC.sky.view
01 Jun 2020 05:40:24,536 INFO : Expanding Inter-day QC.sky
01 Jun 2020 05:40:24,546 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
01 Jun 2020 05:40:24,675 INFO : 1% Done
01 Jun 2020 05:40:24,682 INFO : Inserting sp|P00450|CERU_HUMAN
01 Jun 2020 05:40:24,713 INFO : 2% Done
01 Jun 2020 05:40:24,736 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:24,742 INFO : Inserting sp|P00747|PLMN_HUMAN
01 Jun 2020 05:40:24,789 INFO : 3% Done
01 Jun 2020 05:40:24,811 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:24,817 INFO : Inserting sp|P59665|DEF1_HUMAN
01 Jun 2020 05:40:24,842 INFO : 4% Done
01 Jun 2020 05:40:24,864 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:24,871 INFO : Inserting sp|P01024|CO3_HUMAN
01 Jun 2020 05:40:24,872 INFO : 5% Done
01 Jun 2020 05:40:24,895 INFO : 6% Done
01 Jun 2020 05:40:24,938 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:24,945 INFO : Inserting sp|P02749|APOH_HUMAN
01 Jun 2020 05:40:24,992 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:24,992 INFO : 7% Done
01 Jun 2020 05:40:24,999 INFO : Inserting sp|P02765|FETUA_HUMAN
01 Jun 2020 05:40:25,021 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,028 INFO : Inserting sp|P02647|APOA1_HUMAN
01 Jun 2020 05:40:25,030 INFO : 8% Done
01 Jun 2020 05:40:25,066 INFO : 9% Done
01 Jun 2020 05:40:25,077 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,081 INFO : Inserting sp|O75882|ATRN_HUMAN
01 Jun 2020 05:40:25,082 INFO : 10% Done
01 Jun 2020 05:40:25,094 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,094 INFO : Inserting P07359
01 Jun 2020 05:40:25,107 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,110 INFO : Inserting sp|P55056|APOC4_HUMAN
01 Jun 2020 05:40:25,123 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,126 INFO : Inserting sp|P07358|CO8B_HUMAN
01 Jun 2020 05:40:25,127 INFO : 11% Done
01 Jun 2020 05:40:25,139 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,143 INFO : Inserting sp|O00187|MASP2_HUMAN
01 Jun 2020 05:40:25,155 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,159 INFO : Inserting sp|P02655|APOC2_HUMAN
01 Jun 2020 05:40:25,160 INFO : 12% Done
01 Jun 2020 05:40:25,172 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,176 INFO : Inserting sp|P02750|A2GL_HUMAN
01 Jun 2020 05:40:25,177 INFO : 13% Done
01 Jun 2020 05:40:25,201 INFO : 14% Done
01 Jun 2020 05:40:25,213 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,217 INFO : Inserting sp|P06681|CO2_HUMAN
01 Jun 2020 05:40:25,243 INFO : 15% Done
01 Jun 2020 05:40:25,254 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,258 INFO : Inserting sp|P02760|AMBP_HUMAN
01 Jun 2020 05:40:25,259 INFO : 16% Done
01 Jun 2020 05:40:25,284 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,288 INFO : Inserting sp|O75636|FCN3_HUMAN
01 Jun 2020 05:40:25,289 INFO : 17% Done
01 Jun 2020 05:40:25,301 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,305 INFO : Inserting sp|P05156|CFAI_HUMAN
01 Jun 2020 05:40:25,307 INFO : 18% Done
01 Jun 2020 05:40:25,331 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,335 INFO : Inserting sp|P07357|CO8A_HUMAN
01 Jun 2020 05:40:25,360 INFO : 19% Done
01 Jun 2020 05:40:25,372 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,376 INFO : Inserting sp|P06276|CHLE_HUMAN
01 Jun 2020 05:40:25,389 INFO : 20% Done
01 Jun 2020 05:40:25,401 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,405 INFO : Inserting sp|P10643|CO7_HUMAN
01 Jun 2020 05:40:25,406 INFO : 21% Done
01 Jun 2020 05:40:25,430 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,434 INFO : Inserting sp|P19827|ITIH1_HUMAN
01 Jun 2020 05:40:25,435 INFO : 22% Done
01 Jun 2020 05:40:25,471 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,474 INFO : Inserting sp|P02743|SAMP_HUMAN
01 Jun 2020 05:40:25,488 INFO : 23% Done
01 Jun 2020 05:40:25,511 INFO : 24% Done
01 Jun 2020 05:40:25,522 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,525 INFO : Inserting sp|P05452|TETN_HUMAN
01 Jun 2020 05:40:25,526 INFO : 25% Done
01 Jun 2020 05:40:25,549 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,552 INFO : Inserting sp|P02748|CO9_HUMAN
01 Jun 2020 05:40:25,553 INFO : 26% Done
01 Jun 2020 05:40:25,586 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,590 INFO : Inserting sp|P01031|CO5_HUMAN
01 Jun 2020 05:40:25,590 INFO : 27% Done
01 Jun 2020 05:40:25,602 INFO : 28% Done
01 Jun 2020 05:40:25,624 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,628 INFO : Inserting sp|P00751|CFAB_HUMAN
01 Jun 2020 05:40:25,628 INFO : 29% Done
01 Jun 2020 05:40:25,678 INFO : 30% Done
01 Jun 2020 05:40:25,706 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,709 INFO : Inserting sp|P10909|CLUS_HUMAN
01 Jun 2020 05:40:25,769 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,770 INFO : 31% Done
01 Jun 2020 05:40:25,773 INFO : Inserting sp|P35858|ALS_HUMAN
01 Jun 2020 05:40:25,793 INFO : 32% Done
01 Jun 2020 05:40:25,805 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,809 INFO : Inserting sp|P13671|CO6_HUMAN
01 Jun 2020 05:40:25,823 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:25,826 INFO : Inserting sp|P07996|TSP1_HUMAN
01 Jun 2020 05:40:25,827 INFO : 33% Done
01 Jun 2020 05:40:25,840 INFO : 34% Done
01 Jun 2020 05:40:25,852 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,855 INFO : Inserting sp|O14791|APOL1_HUMAN
01 Jun 2020 05:40:25,880 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,884 INFO : Inserting sp|P01011|AACT_HUMAN
01 Jun 2020 05:40:25,885 INFO : 35% Done
01 Jun 2020 05:40:25,909 INFO : 36% Done
01 Jun 2020 05:40:25,923 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,927 INFO : Inserting sp|P05155|IC1_HUMAN
01 Jun 2020 05:40:25,928 INFO : 37% Done
01 Jun 2020 05:40:25,951 INFO : 38% Done
01 Jun 2020 05:40:25,961 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:25,965 INFO : Inserting sp|P04004|VTNC_HUMAN
01 Jun 2020 05:40:25,989 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:25,992 INFO : Inserting sp|Q96KN2|CNDP1_HUMAN
01 Jun 2020 05:40:25,993 INFO : 39% Done
01 Jun 2020 05:40:26,017 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,017 INFO : 40% Done
01 Jun 2020 05:40:26,021 INFO : Inserting sp|P19823|ITIH2_HUMAN
01 Jun 2020 05:40:26,034 INFO : 41% Done
01 Jun 2020 05:40:26,046 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,050 INFO : Inserting sp|P05543|THBG_HUMAN
01 Jun 2020 05:40:26,063 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,063 INFO : 42% Done
01 Jun 2020 05:40:26,067 INFO : Inserting sp|P36955|PEDF_HUMAN
01 Jun 2020 05:40:26,104 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,108 INFO : Inserting sp|P00742|FA10_HUMAN
01 Jun 2020 05:40:26,109 INFO : 43% Done
01 Jun 2020 05:40:26,121 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,125 INFO : Inserting sp|P06396|GELS_HUMAN
01 Jun 2020 05:40:26,126 INFO : 44% Done
01 Jun 2020 05:40:26,150 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,154 INFO : Inserting sp|Q06033|ITIH3_HUMAN
01 Jun 2020 05:40:26,155 INFO : 45% Done
01 Jun 2020 05:40:26,167 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,170 INFO : Inserting sp|P07360|CO8G_HUMAN
01 Jun 2020 05:40:26,171 INFO : 46% Done
01 Jun 2020 05:40:26,207 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,211 INFO : Inserting sp|P29622|KAIN_HUMAN
01 Jun 2020 05:40:26,225 INFO : 47% Done
01 Jun 2020 05:40:26,237 INFO : 48% Done
01 Jun 2020 05:40:26,249 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,253 INFO : Inserting sp|P02741|CRP_HUMAN
01 Jun 2020 05:40:26,266 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,269 INFO : Inserting sp|P05546|HEP2_HUMAN
01 Jun 2020 05:40:26,270 INFO : 49% Done
01 Jun 2020 05:40:26,283 INFO : 50% Done
01 Jun 2020 05:40:26,294 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,298 INFO : Inserting sp|P51884|LUM_HUMAN
01 Jun 2020 05:40:26,323 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,327 INFO : Inserting sp|P00740|FA9_HUMAN
01 Jun 2020 05:40:26,328 INFO : 51% Done
01 Jun 2020 05:40:26,340 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,343 INFO : Inserting sp|P22792|CPN2_HUMAN
01 Jun 2020 05:40:26,357 INFO : 52% Done
01 Jun 2020 05:40:26,369 INFO : 53% Done
01 Jun 2020 05:40:26,380 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,384 INFO : Inserting sp|P08603|CFAH_HUMAN
01 Jun 2020 05:40:26,398 INFO : 54% Done
01 Jun 2020 05:40:26,421 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,425 INFO : Inserting sp|P35542|SAA4_HUMAN
01 Jun 2020 05:40:26,438 INFO : 55% Done
01 Jun 2020 05:40:26,462 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,466 INFO : Inserting sp|P0CF74|LAC6_HUMAN
01 Jun 2020 05:40:26,467 INFO : 56% Done
01 Jun 2020 05:40:26,480 INFO : 57% Done
01 Jun 2020 05:40:26,492 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,495 INFO : Inserting sp|P01591|IGJ_HUMAN
01 Jun 2020 05:40:26,509 INFO : 58% Done
01 Jun 2020 05:40:26,533 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,537 INFO : Inserting sp|P02652|APOA2_HUMAN
01 Jun 2020 05:40:26,550 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,554 INFO : Inserting sp|P02787|TRFE_HUMAN
01 Jun 2020 05:40:26,555 INFO : 59% Done
01 Jun 2020 05:40:26,567 INFO : 60% Done
01 Jun 2020 05:40:26,589 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,593 INFO : Inserting sp|P11226|MBL2_HUMAN
01 Jun 2020 05:40:26,607 INFO : 61% Done
01 Jun 2020 05:40:26,631 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,634 INFO : Inserting sp|P01625|KV402_HUMAN
01 Jun 2020 05:40:26,635 INFO : 62% Done
01 Jun 2020 05:40:26,668 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,671 INFO : Inserting sp|P14151|LYAM1_HUMAN
01 Jun 2020 05:40:26,672 INFO : 63% Done
01 Jun 2020 05:40:26,684 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,686 INFO : Inserting sp|P01765|HV304_HUMAN
01 Jun 2020 05:40:26,687 INFO : 64% Done
01 Jun 2020 05:40:26,698 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,701 INFO : Inserting sp|P0DJI8|SAA1_HUMAN
01 Jun 2020 05:40:26,712 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:26,715 INFO : Inserting sp|P00924|ENO1_YEAST
01 Jun 2020 05:40:26,716 INFO : 65% Done
01 Jun 2020 05:40:26,738 INFO : 66% Done
01 Jun 2020 05:40:26,813 DEBUG: Total peptides inserted: 5
01 Jun 2020 05:40:26,817 INFO : Inserting sp|P0C0L5|CO4B_HUMAN
01 Jun 2020 05:40:26,818 INFO : 67% Done
01 Jun 2020 05:40:26,830 INFO : 68% Done
01 Jun 2020 05:40:26,853 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,857 INFO : Inserting sp|P37802|TAGL2_HUMAN
01 Jun 2020 05:40:26,857 INFO : 69% Done
01 Jun 2020 05:40:26,869 INFO : 70% Done
01 Jun 2020 05:40:26,882 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,885 INFO : Inserting sp|P02656|APOC3_HUMAN
01 Jun 2020 05:40:26,920 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:26,924 INFO : Inserting sp|P04278|SHBG_HUMAN
01 Jun 2020 05:40:26,925 INFO : 71% Done
01 Jun 2020 05:40:26,937 INFO : 72% Done
01 Jun 2020 05:40:26,948 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,951 INFO : Inserting sp|P00738|HPT_HUMAN
01 Jun 2020 05:40:26,963 INFO : 73% Done
01 Jun 2020 05:40:26,974 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:26,978 INFO : Inserting sp|P02763|A1AG1_HUMAN
01 Jun 2020 05:40:26,978 INFO : 74% Done
01 Jun 2020 05:40:27,012 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:27,015 INFO : Inserting sp|P00739|HPTR_HUMAN
01 Jun 2020 05:40:27,016 INFO : 75% Done
01 Jun 2020 05:40:27,027 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:27,031 INFO : Inserting sp|P01876|IGHA1_HUMAN
01 Jun 2020 05:40:27,044 INFO : 76% Done
01 Jun 2020 05:40:27,066 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:27,069 INFO : Inserting sp|P20851|C4BPB_HUMAN
01 Jun 2020 05:40:27,070 INFO : 77% Done
01 Jun 2020 05:40:27,081 INFO : 78% Done
01 Jun 2020 05:40:27,091 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:27,104 INFO : Inserting sp|P04196|HRG_HUMAN
01 Jun 2020 05:40:27,128 INFO : 79% Done
01 Jun 2020 05:40:27,139 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:27,142 INFO : Inserting sp|P20742|PZP_HUMAN
01 Jun 2020 05:40:27,154 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:27,157 INFO : Inserting sp|P36980|FHR2_HUMAN
01 Jun 2020 05:40:27,158 INFO : 80% Done
01 Jun 2020 05:40:27,169 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:27,169 INFO : Done parsing Skyline document.
01 Jun 2020 05:40:27,171 INFO : Calculating fold changes
01 Jun 2020 05:40:27,171 DEBUG: Calculating fold change for group comparison NP, 1 of 1
01 Jun 2020 05:40:28,486 INFO : 98% Done
01 Jun 2020 05:40:28,486 INFO : Done calculating fold changes.
01 Jun 2020 05:40:28,488 INFO : Creating and populating temp tables for Proportion values
01 Jun 2020 05:40:28,507 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
01 Jun 2020 05:40:28,571 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
01 Jun 2020 05:40:28,618 INFO : Cleaning up temp tables
01 Jun 2020 05:40:28,986 INFO : Completed import of Skyline document from Inter-day QC_2020-05-26_09-23-53.sky.zip
01 Jun 2020 05:40:28,987 INFO : 100% Done
01 Jun 2020 05:40:28,992 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86084/Inter-day%20QC_2020-05-26_09-23-53.sky.zip into the system
01 Jun 2020 05:40:28,992 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86083/Instrumental%20set-up%20QC_2020-05-26_09-21-49/Instrumental%20set-up%20QC.skyd into the system
01 Jun 2020 05:40:28,993 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86083/Instrumental%20set-up%20QC_2020-05-26_09-21-49/Instrumental%20set-up%20QC.skyd into the system
01 Jun 2020 05:40:28,993 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86083/Instrumental%20set-up%20QC_2020-05-26_09-21-49.sky.zip into the system
01 Jun 2020 05:40:28,995 INFO : Starting import from Instrumental set-up QC_2020-05-26_09-21-49.sky.zip
01 Jun 2020 05:40:28,997 INFO : Starting to import Skyline document from Instrumental set-up QC_2020-05-26_09-21-49.sky.zip
01 Jun 2020 05:40:29,000 INFO : Expanding NIST_human_IT_2012-05-30.blib
01 Jun 2020 05:40:29,002 INFO : Expanding Instrumental set-up QC.skyd
01 Jun 2020 05:40:29,059 INFO : Expanding Instrumental set-up QC.sky.view
01 Jun 2020 05:40:29,059 INFO : Expanding Instrumental set-up QC.sky
01 Jun 2020 05:40:29,069 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
01 Jun 2020 05:40:29,216 INFO : 1% Done
01 Jun 2020 05:40:29,220 INFO : Inserting sp|P00450|CERU_HUMAN
01 Jun 2020 05:40:29,237 INFO : 2% Done
01 Jun 2020 05:40:29,248 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:29,251 INFO : Inserting sp|P00747|PLMN_HUMAN
01 Jun 2020 05:40:29,275 INFO : 3% Done
01 Jun 2020 05:40:29,286 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:29,289 INFO : Inserting sp|P59665|DEF1_HUMAN
01 Jun 2020 05:40:29,302 INFO : 4% Done
01 Jun 2020 05:40:29,313 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:29,316 INFO : Inserting sp|P01024|CO3_HUMAN
01 Jun 2020 05:40:29,317 INFO : 5% Done
01 Jun 2020 05:40:29,329 INFO : 6% Done
01 Jun 2020 05:40:29,351 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:29,355 INFO : Inserting sp|P02749|APOH_HUMAN
01 Jun 2020 05:40:29,367 INFO : 7% Done
01 Jun 2020 05:40:29,379 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:29,383 INFO : Inserting sp|P02765|FETUA_HUMAN
01 Jun 2020 05:40:29,395 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:29,398 INFO : Inserting sp|P02647|APOA1_HUMAN
01 Jun 2020 05:40:29,399 INFO : 8% Done
01 Jun 2020 05:40:29,411 INFO : 9% Done
01 Jun 2020 05:40:29,433 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:29,436 INFO : Inserting sp|O75882|ATRN_HUMAN
01 Jun 2020 05:40:29,437 INFO : 10% Done
01 Jun 2020 05:40:29,448 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:29,448 INFO : Inserting P07359
01 Jun 2020 05:40:29,460 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:29,464 INFO : Inserting sp|P55056|APOC4_HUMAN
01 Jun 2020 05:40:29,476 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:29,479 INFO : Inserting sp|P07358|CO8B_HUMAN
01 Jun 2020 05:40:29,480 INFO : 11% Done
01 Jun 2020 05:40:29,491 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:29,494 INFO : Inserting sp|O00187|MASP2_HUMAN
01 Jun 2020 05:40:29,520 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:29,523 INFO : Inserting sp|P02655|APOC2_HUMAN
01 Jun 2020 05:40:29,524 INFO : 12% Done
01 Jun 2020 05:40:29,535 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:29,538 INFO : Inserting sp|P02750|A2GL_HUMAN
01 Jun 2020 05:40:29,539 INFO : 13% Done
01 Jun 2020 05:40:29,561 INFO : 14% Done
01 Jun 2020 05:40:29,572 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:29,575 INFO : Inserting sp|P06681|CO2_HUMAN
01 Jun 2020 05:40:29,599 INFO : 15% Done
01 Jun 2020 05:40:29,610 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:29,613 INFO : Inserting sp|P02760|AMBP_HUMAN
01 Jun 2020 05:40:29,614 INFO : 16% Done
01 Jun 2020 05:40:29,636 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:29,640 INFO : Inserting sp|O75636|FCN3_HUMAN
01 Jun 2020 05:40:29,641 INFO : 17% Done
01 Jun 2020 05:40:29,663 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:29,666 INFO : Inserting sp|P05156|CFAI_HUMAN
01 Jun 2020 05:40:29,667 INFO : 18% Done
01 Jun 2020 05:40:29,701 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:29,704 INFO : Inserting sp|P07357|CO8A_HUMAN
01 Jun 2020 05:40:29,716 INFO : 19% Done
01 Jun 2020 05:40:29,727 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:29,730 INFO : Inserting sp|P06276|CHLE_HUMAN
01 Jun 2020 05:40:29,742 INFO : 20% Done
01 Jun 2020 05:40:30,219 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:30,222 INFO : Inserting sp|P10643|CO7_HUMAN
01 Jun 2020 05:40:30,236 INFO : 21% Done
01 Jun 2020 05:40:30,247 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:30,250 INFO : Inserting sp|P19827|ITIH1_HUMAN
01 Jun 2020 05:40:30,251 INFO : 22% Done
01 Jun 2020 05:40:30,286 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:30,289 INFO : Inserting sp|P02743|SAMP_HUMAN
01 Jun 2020 05:40:30,290 INFO : 23% Done
01 Jun 2020 05:40:30,313 INFO : 24% Done
01 Jun 2020 05:40:30,324 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:30,327 INFO : Inserting sp|P05452|TETN_HUMAN
01 Jun 2020 05:40:30,328 INFO : 25% Done
01 Jun 2020 05:40:30,351 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:30,355 INFO : Inserting sp|P02748|CO9_HUMAN
01 Jun 2020 05:40:30,356 INFO : 26% Done
01 Jun 2020 05:40:30,389 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:30,392 INFO : Inserting sp|P01031|CO5_HUMAN
01 Jun 2020 05:40:30,393 INFO : 27% Done
01 Jun 2020 05:40:30,405 INFO : 28% Done
01 Jun 2020 05:40:30,427 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:30,430 INFO : Inserting sp|P00751|CFAB_HUMAN
01 Jun 2020 05:40:30,431 INFO : 29% Done
01 Jun 2020 05:40:30,453 INFO : 30% Done
01 Jun 2020 05:40:30,464 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:30,467 INFO : Inserting sp|P10909|CLUS_HUMAN
01 Jun 2020 05:40:30,490 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:30,494 INFO : Inserting sp|P35858|ALS_HUMAN
01 Jun 2020 05:40:30,494 INFO : 31% Done
01 Jun 2020 05:40:30,506 INFO : 32% Done
01 Jun 2020 05:40:30,517 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:30,520 INFO : Inserting sp|P13671|CO6_HUMAN
01 Jun 2020 05:40:30,532 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:30,535 INFO : Inserting sp|P07996|TSP1_HUMAN
01 Jun 2020 05:40:30,536 INFO : 33% Done
01 Jun 2020 05:40:30,547 INFO : 34% Done
01 Jun 2020 05:40:30,559 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:30,562 INFO : Inserting sp|O14791|APOL1_HUMAN
01 Jun 2020 05:40:30,895 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:30,898 INFO : Inserting sp|P01011|AACT_HUMAN
01 Jun 2020 05:40:30,899 INFO : 35% Done
01 Jun 2020 05:40:30,922 INFO : 36% Done
01 Jun 2020 05:40:30,933 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:30,937 INFO : Inserting sp|P05155|IC1_HUMAN
01 Jun 2020 05:40:30,937 INFO : 37% Done
01 Jun 2020 05:40:30,961 INFO : 38% Done
01 Jun 2020 05:40:30,973 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:30,976 INFO : Inserting sp|P04004|VTNC_HUMAN
01 Jun 2020 05:40:31,001 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:31,004 INFO : Inserting sp|Q96KN2|CNDP1_HUMAN
01 Jun 2020 05:40:31,005 INFO : 39% Done
01 Jun 2020 05:40:31,028 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:31,031 INFO : Inserting sp|P19823|ITIH2_HUMAN
01 Jun 2020 05:40:31,032 INFO : 40% Done
01 Jun 2020 05:40:31,044 INFO : 41% Done
01 Jun 2020 05:40:31,056 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:31,060 INFO : Inserting sp|P05543|THBG_HUMAN
01 Jun 2020 05:40:31,072 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:31,075 INFO : Inserting sp|P36955|PEDF_HUMAN
01 Jun 2020 05:40:31,076 INFO : 42% Done
01 Jun 2020 05:40:31,503 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:31,507 INFO : Inserting sp|P00742|FA10_HUMAN
01 Jun 2020 05:40:31,508 INFO : 43% Done
01 Jun 2020 05:40:31,552 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:31,556 INFO : Inserting sp|P06396|GELS_HUMAN
01 Jun 2020 05:40:31,557 INFO : 44% Done
01 Jun 2020 05:40:31,580 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:31,583 INFO : Inserting sp|Q06033|ITIH3_HUMAN
01 Jun 2020 05:40:31,584 INFO : 45% Done
01 Jun 2020 05:40:31,596 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:31,599 INFO : Inserting sp|P07360|CO8G_HUMAN
01 Jun 2020 05:40:31,600 INFO : 46% Done
01 Jun 2020 05:40:31,634 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:31,638 INFO : Inserting sp|P29622|KAIN_HUMAN
01 Jun 2020 05:40:31,639 INFO : 47% Done
01 Jun 2020 05:40:31,663 INFO : 48% Done
01 Jun 2020 05:40:31,674 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:31,678 INFO : Inserting sp|P02741|CRP_HUMAN
01 Jun 2020 05:40:31,690 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:31,690 INFO : 49% Done
01 Jun 2020 05:40:31,694 INFO : Inserting sp|P05546|HEP2_HUMAN
01 Jun 2020 05:40:31,706 INFO : 50% Done
01 Jun 2020 05:40:31,731 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:31,734 INFO : Inserting sp|P51884|LUM_HUMAN
01 Jun 2020 05:40:31,758 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:31,762 INFO : Inserting sp|P00740|FA9_HUMAN
01 Jun 2020 05:40:31,762 INFO : 51% Done
01 Jun 2020 05:40:31,774 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:31,777 INFO : Inserting sp|P22792|CPN2_HUMAN
01 Jun 2020 05:40:31,790 INFO : 52% Done
01 Jun 2020 05:40:31,813 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:31,813 INFO : 53% Done
01 Jun 2020 05:40:31,817 INFO : Inserting sp|P08603|CFAH_HUMAN
01 Jun 2020 05:40:31,829 INFO : 54% Done
01 Jun 2020 05:40:31,852 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:31,856 INFO : Inserting sp|P35542|SAA4_HUMAN
01 Jun 2020 05:40:31,883 INFO : 55% Done
01 Jun 2020 05:40:31,907 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:31,910 INFO : Inserting sp|P0CF74|LAC6_HUMAN
01 Jun 2020 05:40:31,911 INFO : 56% Done
01 Jun 2020 05:40:31,929 INFO : 57% Done
01 Jun 2020 05:40:31,941 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:31,944 INFO : Inserting sp|P01591|IGJ_HUMAN
01 Jun 2020 05:40:31,957 INFO : 58% Done
01 Jun 2020 05:40:31,981 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:31,984 INFO : Inserting sp|P02652|APOA2_HUMAN
01 Jun 2020 05:40:31,996 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:32,000 INFO : Inserting sp|P02787|TRFE_HUMAN
01 Jun 2020 05:40:32,001 INFO : 59% Done
01 Jun 2020 05:40:32,024 INFO : 60% Done
01 Jun 2020 05:40:32,035 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:32,039 INFO : Inserting sp|P11226|MBL2_HUMAN
01 Jun 2020 05:40:32,040 INFO : 61% Done
01 Jun 2020 05:40:32,070 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:32,073 INFO : Inserting sp|P01625|KV402_HUMAN
01 Jun 2020 05:40:32,074 INFO : 62% Done
01 Jun 2020 05:40:32,192 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:32,195 INFO : Inserting sp|P14151|LYAM1_HUMAN
01 Jun 2020 05:40:32,196 INFO : 63% Done
01 Jun 2020 05:40:32,252 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:32,255 INFO : Inserting sp|P01765|HV304_HUMAN
01 Jun 2020 05:40:32,256 INFO : 64% Done
01 Jun 2020 05:40:32,304 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:32,307 INFO : Inserting sp|P0DJI8|SAA1_HUMAN
01 Jun 2020 05:40:32,333 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:32,337 INFO : Inserting sp|P00924|ENO1_YEAST
01 Jun 2020 05:40:32,338 INFO : 65% Done
01 Jun 2020 05:40:32,373 INFO : 66% Done
01 Jun 2020 05:40:32,408 DEBUG: Total peptides inserted: 5
01 Jun 2020 05:40:32,412 INFO : Inserting sp|P0C0L5|CO4B_HUMAN
01 Jun 2020 05:40:32,412 INFO : 67% Done
01 Jun 2020 05:40:32,425 INFO : 68% Done
01 Jun 2020 05:40:32,448 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:32,452 INFO : Inserting sp|P37802|TAGL2_HUMAN
01 Jun 2020 05:40:32,452 INFO : 69% Done
01 Jun 2020 05:40:32,493 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:32,496 INFO : Inserting sp|P02656|APOC3_HUMAN
01 Jun 2020 05:40:32,497 INFO : 70% Done
01 Jun 2020 05:40:32,532 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:32,536 INFO : Inserting sp|P04278|SHBG_HUMAN
01 Jun 2020 05:40:32,536 INFO : 71% Done
01 Jun 2020 05:40:32,548 INFO : 72% Done
01 Jun 2020 05:40:32,560 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:32,564 INFO : Inserting sp|P00738|HPT_HUMAN
01 Jun 2020 05:40:32,576 INFO : 73% Done
01 Jun 2020 05:40:32,587 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:32,590 INFO : Inserting sp|P02763|A1AG1_HUMAN
01 Jun 2020 05:40:32,591 INFO : 74% Done
01 Jun 2020 05:40:32,625 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:32,628 INFO : Inserting sp|P00739|HPTR_HUMAN
01 Jun 2020 05:40:32,629 INFO : 75% Done
01 Jun 2020 05:40:32,653 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:32,656 INFO : Inserting sp|P01876|IGHA1_HUMAN
01 Jun 2020 05:40:32,669 INFO : 76% Done
01 Jun 2020 05:40:32,680 INFO : 77% Done
01 Jun 2020 05:40:32,691 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:32,694 INFO : Inserting sp|P20851|C4BPB_HUMAN
01 Jun 2020 05:40:32,707 INFO : 78% Done
01 Jun 2020 05:40:32,718 DEBUG: Total peptides inserted: 2
01 Jun 2020 05:40:32,721 INFO : Inserting sp|P04196|HRG_HUMAN
01 Jun 2020 05:40:32,745 INFO : 79% Done
01 Jun 2020 05:40:32,756 DEBUG: Total peptides inserted: 3
01 Jun 2020 05:40:32,759 INFO : Inserting sp|P20742|PZP_HUMAN
01 Jun 2020 05:40:32,772 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:32,775 INFO : Inserting sp|P36980|FHR2_HUMAN
01 Jun 2020 05:40:32,776 INFO : 80% Done
01 Jun 2020 05:40:32,787 DEBUG: Total peptides inserted: 1
01 Jun 2020 05:40:32,787 INFO : Done parsing Skyline document.
01 Jun 2020 05:40:32,789 INFO : Calculating fold changes
01 Jun 2020 05:40:32,789 DEBUG: Calculating fold change for group comparison NP, 1 of 1
01 Jun 2020 05:40:34,132 INFO : 98% Done
01 Jun 2020 05:40:34,132 INFO : Done calculating fold changes.
01 Jun 2020 05:40:34,133 INFO : Creating and populating temp tables for Proportion values
01 Jun 2020 05:40:34,151 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
01 Jun 2020 05:40:34,213 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
01 Jun 2020 05:40:34,271 INFO : Cleaning up temp tables
01 Jun 2020 05:40:34,272 INFO : Completed import of Skyline document from Instrumental set-up QC_2020-05-26_09-21-49.sky.zip
01 Jun 2020 05:40:34,283 INFO : 100% Done
01 Jun 2020 05:40:34,289 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86083/Instrumental%20set-up%20QC_2020-05-26_09-21-49.sky.zip into the system
01 Jun 2020 05:40:34,359 INFO : Done importing xar
01 Jun 2020 05:40:34,361 INFO : Loading pages and webpart properties
01 Jun 2020 05:40:34,473 INFO : Done importing pages and webpart properties
01 Jun 2020 05:40:34,473 INFO : 
01 Jun 2020 05:40:34,473 INFO : Experiment import completed successfully.
01 Jun 2020 05:40:34,473 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
01 Jun 2020 05:40:34,576 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
01 Jun 2020 05:40:34,576 INFO : 
01 Jun 2020 05:40:34,576 INFO : Finishing up experiment copy.
01 Jun 2020 05:40:34,577 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
01 Jun 2020 05:40:34,659 INFO : Updating access URL to point to the new copy of the data.
01 Jun 2020 05:40:34,785 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
01 Jun 2020 05:40:34,787 INFO : Removing copy permissions given to journal.
01 Jun 2020 05:40:34,902 INFO : Adding read permissions to all users that are folder admins in the source container.
01 Jun 2020 05:40:34,912 INFO : Setting the TargetedMS folder type to 'Experimental Data'
01 Jun 2020 05:40:34,921 INFO : Updating the 'Raw Data' tab configuration
01 Jun 2020 05:40:34,925 INFO : Updating dataFileUrls for run Instrumental set-up QC_2020-05-26_09-21-49.sky.zip; targetedms run ID 88355
01 Jun 2020 05:40:34,925 INFO : Updating dataFileUrl...
01 Jun 2020 05:40:34,925 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86083/Instrumental%20set-up%20QC_2020-05-26_09-21-49.sky.zip
01 Jun 2020 05:40:34,926 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/U%20of%20Liege%20-%20STORI%20study/@files/Instrumental%20set-up%20QC_2020-05-26_09-21-49.sky.zip
01 Jun 2020 05:40:34,929 INFO : Updating dataFileUrl...
01 Jun 2020 05:40:34,929 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86083/Instrumental%20set-up%20QC_2020-05-26_09-21-49/Instrumental%20set-up%20QC.skyd
01 Jun 2020 05:40:34,929 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/U%20of%20Liege%20-%20STORI%20study/@files/Instrumental%20set-up%20QC_2020-05-26_09-21-49/Instrumental%20set-up%20QC.skyd
01 Jun 2020 05:40:34,938 INFO : Updating dataFileUrls for run Inter-day QC_2020-05-26_09-23-53.sky.zip; targetedms run ID 88354
01 Jun 2020 05:40:34,939 INFO : Updating dataFileUrl...
01 Jun 2020 05:40:34,939 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86084/Inter-day%20QC_2020-05-26_09-23-53/Inter-day%20QC.skyd
01 Jun 2020 05:40:34,939 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/U%20of%20Liege%20-%20STORI%20study/@files/Inter-day%20QC_2020-05-26_09-23-53/Inter-day%20QC.skyd
01 Jun 2020 05:40:34,941 INFO : Updating dataFileUrl...
01 Jun 2020 05:40:34,941 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86084/Inter-day%20QC_2020-05-26_09-23-53.sky.zip
01 Jun 2020 05:40:34,942 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/U%20of%20Liege%20-%20STORI%20study/@files/Inter-day%20QC_2020-05-26_09-23-53.sky.zip
01 Jun 2020 05:40:34,945 INFO : Updating dataFileUrls for run Intra-day QC_2020-05-26_09-25-29.sky.zip; targetedms run ID 88353
01 Jun 2020 05:40:34,945 INFO : Updating dataFileUrl...
01 Jun 2020 05:40:34,945 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86085/Intra-day%20QC_2020-05-26_09-25-29.sky.zip
01 Jun 2020 05:40:34,946 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/U%20of%20Liege%20-%20STORI%20study/@files/Intra-day%20QC_2020-05-26_09-25-29.sky.zip
01 Jun 2020 05:40:34,948 INFO : Updating dataFileUrl...
01 Jun 2020 05:40:34,948 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86085/Intra-day%20QC_2020-05-26_09-25-29/Intra-day%20QC.skyd
01 Jun 2020 05:40:34,949 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/U%20of%20Liege%20-%20STORI%20study/@files/Intra-day%20QC_2020-05-26_09-25-29/Intra-day%20QC.skyd
01 Jun 2020 05:40:34,953 INFO : Updating dataFileUrls for run STORI_COHORT_2020-05-26_09-26-46.sky.zip; targetedms run ID 88352
01 Jun 2020 05:40:34,953 INFO : Updating dataFileUrl...
01 Jun 2020 05:40:34,953 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86086/STORI_COHORT_2020-05-26_09-26-46.sky.zip
01 Jun 2020 05:40:34,954 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/U%20of%20Liege%20-%20STORI%20study/@files/STORI_COHORT_2020-05-26_09-26-46.sky.zip
01 Jun 2020 05:40:34,956 INFO : Updating dataFileUrl...
01 Jun 2020 05:40:34,956 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Liege%20-%20STORI%20study_dd38f291-862f-1038-9976-3013bb9ba8d4/_temp__2020-06-01_05-37-55/export/xar/experiments_and_runs.xar.exploded/Run86086/STORI_COHORT_2020-05-26_09-26-46/STORI_COHORT.skyd
01 Jun 2020 05:40:34,956 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/U%20of%20Liege%20-%20STORI%20study/@files/STORI_COHORT_2020-05-26_09-26-46/STORI_COHORT.skyd
01 Jun 2020 05:40:34,960 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'