02 Jun 2020 05:39:45,774 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
02 Jun 2020 05:39:45,794 INFO : Starting to import Skyline document from STORI_COHORT_2020-06-02_14-14-43.sky.zip
02 Jun 2020 05:39:45,797 INFO : Expanding STORI_COHORT.skyd
02 Jun 2020 05:39:48,942 INFO : Expanding STORI_COHORT.sky.view
02 Jun 2020 05:39:48,954 INFO : Expanding STORI_COHORT.sky
02 Jun 2020 05:39:49,409 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
02 Jun 2020 05:39:50,948 INFO : Inserting sp|P00450|CERU_HUMAN
02 Jun 2020 05:39:50,955 INFO : 1% Done
02 Jun 2020 05:39:51,239 INFO : 2% Done
02 Jun 2020 05:39:51,576 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:51,586 INFO : Inserting sp|P00747|PLMN_HUMAN
02 Jun 2020 05:39:52,618 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:52,628 INFO : Inserting sp|P59665|DEF1_HUMAN
02 Jun 2020 05:39:52,643 INFO : 3% Done
02 Jun 2020 05:39:52,975 INFO : 4% Done
02 Jun 2020 05:39:53,295 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:53,305 INFO : Inserting sp|P01024|CO3_HUMAN
02 Jun 2020 05:39:53,659 INFO : 5% Done
02 Jun 2020 05:39:54,005 INFO : 6% Done
02 Jun 2020 05:39:54,324 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:54,333 INFO : Inserting sp|P02749|APOH_HUMAN
02 Jun 2020 05:39:55,045 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:55,054 INFO : Inserting sp|P02765|FETUA_HUMAN
02 Jun 2020 05:39:55,067 INFO : 7% Done
02 Jun 2020 05:39:55,387 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:55,396 INFO : Inserting sp|P02647|APOA1_HUMAN
02 Jun 2020 05:39:55,737 INFO : 8% Done
02 Jun 2020 05:39:56,075 INFO : 9% Done
02 Jun 2020 05:39:56,396 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:56,406 INFO : Inserting sp|O75882|ATRN_HUMAN
02 Jun 2020 05:39:56,733 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:56,734 INFO : Inserting P07359
02 Jun 2020 05:39:56,748 INFO : 10% Done
02 Jun 2020 05:39:57,099 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:57,108 INFO : Inserting sp|P55056|APOC4_HUMAN
02 Jun 2020 05:39:57,434 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:57,444 INFO : Inserting sp|P07358|CO8B_HUMAN
02 Jun 2020 05:39:57,818 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:57,827 INFO : Inserting sp|O00187|MASP2_HUMAN
02 Jun 2020 05:39:57,844 INFO : 11% Done
02 Jun 2020 05:39:58,164 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:58,172 INFO : Inserting sp|P02655|APOC2_HUMAN
02 Jun 2020 05:39:58,186 INFO : 12% Done
02 Jun 2020 05:39:58,502 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:58,511 INFO : Inserting sp|P02750|A2GL_HUMAN
02 Jun 2020 05:39:58,847 INFO : 13% Done
02 Jun 2020 05:39:59,499 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:59,508 INFO : Inserting sp|P06681|CO2_HUMAN
02 Jun 2020 05:39:59,522 INFO : 14% Done
02 Jun 2020 05:40:00,458 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:00,467 INFO : Inserting sp|P02760|AMBP_HUMAN
02 Jun 2020 05:40:00,481 INFO : 15% Done
02 Jun 2020 05:40:00,831 INFO : 16% Done
02 Jun 2020 05:40:01,156 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:01,165 INFO : Inserting sp|O75636|FCN3_HUMAN
02 Jun 2020 05:40:01,495 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:01,504 INFO : Inserting sp|P05156|CFAI_HUMAN
02 Jun 2020 05:40:01,518 INFO : 17% Done
02 Jun 2020 05:40:01,874 INFO : 18% Done
02 Jun 2020 05:40:02,213 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:02,222 INFO : Inserting sp|P07357|CO8A_HUMAN
02 Jun 2020 05:40:02,917 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:02,927 INFO : Inserting sp|P06276|CHLE_HUMAN
02 Jun 2020 05:40:02,941 INFO : 19% Done
02 Jun 2020 05:40:03,589 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:03,598 INFO : Inserting sp|P10643|CO7_HUMAN
02 Jun 2020 05:40:03,611 INFO : 20% Done
02 Jun 2020 05:40:03,950 INFO : 21% Done
02 Jun 2020 05:40:04,272 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:04,281 INFO : Inserting sp|P19827|ITIH1_HUMAN
02 Jun 2020 05:40:04,621 INFO : 22% Done
02 Jun 2020 05:40:05,267 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:05,276 INFO : Inserting sp|P02743|SAMP_HUMAN
02 Jun 2020 05:40:05,615 INFO : 23% Done
02 Jun 2020 05:40:06,291 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:06,301 INFO : Inserting sp|P05452|TETN_HUMAN
02 Jun 2020 05:40:06,315 INFO : 24% Done
02 Jun 2020 05:40:06,653 INFO : 25% Done
02 Jun 2020 05:40:07,128 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:07,138 INFO : Inserting sp|P02748|CO9_HUMAN
02 Jun 2020 05:40:07,503 INFO : 26% Done
02 Jun 2020 05:40:08,164 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:08,175 INFO : Inserting sp|P01031|CO5_HUMAN
02 Jun 2020 05:40:08,543 INFO : 27% Done
02 Jun 2020 05:40:08,876 INFO : 28% Done
02 Jun 2020 05:40:09,216 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:09,225 INFO : Inserting sp|P00751|CFAB_HUMAN
02 Jun 2020 05:40:09,564 INFO : 29% Done
02 Jun 2020 05:40:10,216 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:10,226 INFO : Inserting sp|P10909|CLUS_HUMAN
02 Jun 2020 05:40:10,240 INFO : 30% Done
02 Jun 2020 05:40:10,906 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:10,915 INFO : Inserting sp|P35858|ALS_HUMAN
02 Jun 2020 05:40:11,322 INFO : 31% Done
02 Jun 2020 05:40:11,644 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:11,655 INFO : Inserting sp|P13671|CO6_HUMAN
02 Jun 2020 05:40:11,668 INFO : 32% Done
02 Jun 2020 05:40:11,995 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:12,005 INFO : Inserting sp|P07996|TSP1_HUMAN
02 Jun 2020 05:40:12,346 INFO : 33% Done
02 Jun 2020 05:40:12,673 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:12,682 INFO : Inserting sp|O14791|APOL1_HUMAN
02 Jun 2020 05:40:12,696 INFO : 34% Done
02 Jun 2020 05:40:13,346 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:13,356 INFO : Inserting sp|P01011|AACT_HUMAN
02 Jun 2020 05:40:13,699 INFO : 35% Done
02 Jun 2020 05:40:14,401 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:14,410 INFO : Inserting sp|P05155|IC1_HUMAN
02 Jun 2020 05:40:14,473 INFO : 36% Done
02 Jun 2020 05:40:14,810 INFO : 37% Done
02 Jun 2020 05:40:15,454 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:15,464 INFO : Inserting sp|P04004|VTNC_HUMAN
02 Jun 2020 05:40:15,477 INFO : 38% Done
02 Jun 2020 05:40:16,134 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:16,144 INFO : Inserting sp|Q96KN2|CNDP1_HUMAN
02 Jun 2020 05:40:16,535 INFO : 39% Done
02 Jun 2020 05:40:16,862 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:16,872 INFO : Inserting sp|P19823|ITIH2_HUMAN
02 Jun 2020 05:40:17,213 INFO : 40% Done
02 Jun 2020 05:40:17,532 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:17,542 INFO : Inserting sp|P05543|THBG_HUMAN
02 Jun 2020 05:40:17,563 INFO : 41% Done
02 Jun 2020 05:40:17,901 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:17,910 INFO : Inserting sp|P36955|PEDF_HUMAN
02 Jun 2020 05:40:18,275 INFO : 42% Done
02 Jun 2020 05:40:18,961 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:18,970 INFO : Inserting sp|P00742|FA10_HUMAN
02 Jun 2020 05:40:19,300 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:19,309 INFO : Inserting sp|P06396|GELS_HUMAN
02 Jun 2020 05:40:19,322 INFO : 43% Done
02 Jun 2020 05:40:19,692 INFO : 44% Done
02 Jun 2020 05:40:20,036 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:20,044 INFO : Inserting sp|Q06033|ITIH3_HUMAN
02 Jun 2020 05:40:20,345 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:20,354 INFO : Inserting sp|P07360|CO8G_HUMAN
02 Jun 2020 05:40:20,362 INFO : 45% Done
02 Jun 2020 05:40:20,680 INFO : 46% Done
02 Jun 2020 05:40:21,379 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:21,388 INFO : Inserting sp|P29622|KAIN_HUMAN
02 Jun 2020 05:40:22,046 INFO : 47% Done
02 Jun 2020 05:40:22,422 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:22,432 INFO : Inserting sp|P02741|CRP_HUMAN
02 Jun 2020 05:40:22,447 INFO : 48% Done
02 Jun 2020 05:40:22,766 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:22,775 INFO : Inserting sp|P05546|HEP2_HUMAN
02 Jun 2020 05:40:23,161 INFO : 49% Done
02 Jun 2020 05:40:23,488 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:23,497 INFO : Inserting sp|P51884|LUM_HUMAN
02 Jun 2020 05:40:23,511 INFO : 50% Done
02 Jun 2020 05:40:24,165 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:24,174 INFO : Inserting sp|P00740|FA9_HUMAN
02 Jun 2020 05:40:24,510 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:24,520 INFO : Inserting sp|P22792|CPN2_HUMAN
02 Jun 2020 05:40:24,534 INFO : 51% Done
02 Jun 2020 05:40:25,195 INFO : 52% Done
02 Jun 2020 05:40:25,519 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:25,529 INFO : Inserting sp|P08603|CFAH_HUMAN
02 Jun 2020 05:40:25,543 INFO : 53% Done
02 Jun 2020 05:40:26,199 INFO : 54% Done
02 Jun 2020 05:40:26,498 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:26,507 INFO : Inserting sp|P35542|SAA4_HUMAN
02 Jun 2020 05:40:27,141 INFO : 55% Done
02 Jun 2020 05:40:27,462 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:27,471 INFO : Inserting sp|P0CF74|LAC6_HUMAN
02 Jun 2020 05:40:27,815 INFO : 56% Done
02 Jun 2020 05:40:28,142 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:28,151 INFO : Inserting sp|P01591|IGJ_HUMAN
02 Jun 2020 05:40:28,166 INFO : 57% Done
02 Jun 2020 05:40:28,923 INFO : 58% Done
02 Jun 2020 05:40:29,258 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:29,268 INFO : Inserting sp|P02652|APOA2_HUMAN
02 Jun 2020 05:40:29,601 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:29,611 INFO : Inserting sp|P02787|TRFE_HUMAN
02 Jun 2020 05:40:29,964 INFO : 59% Done
02 Jun 2020 05:40:30,301 INFO : 60% Done
02 Jun 2020 05:40:30,667 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:30,677 INFO : Inserting sp|P11226|MBL2_HUMAN
02 Jun 2020 05:40:31,076 INFO : 61% Done
02 Jun 2020 05:40:31,397 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:31,405 INFO : Inserting sp|P01625|KV402_HUMAN
02 Jun 2020 05:40:31,419 INFO : 62% Done
02 Jun 2020 05:40:32,481 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:32,491 INFO : Inserting sp|P14151|LYAM1_HUMAN
02 Jun 2020 05:40:32,821 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:32,828 INFO : 63% Done
02 Jun 2020 05:40:32,836 INFO : Inserting sp|P01765|HV304_HUMAN
02 Jun 2020 05:40:33,217 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:33,226 INFO : Inserting sp|P0DJI8|SAA1_HUMAN
02 Jun 2020 05:40:33,385 INFO : 64% Done
02 Jun 2020 05:40:33,710 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:33,720 INFO : Inserting sp|P00924|ENO1_YEAST
02 Jun 2020 05:40:34,105 INFO : 65% Done
02 Jun 2020 05:40:34,474 INFO : 66% Done
02 Jun 2020 05:40:35,497 DEBUG: Total peptides inserted: 5
02 Jun 2020 05:40:35,509 INFO : Inserting sp|P0C0L5|CO4B_HUMAN
02 Jun 2020 05:40:35,523 INFO : 67% Done
02 Jun 2020 05:40:36,200 INFO : 68% Done
02 Jun 2020 05:40:36,548 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:36,557 INFO : Inserting sp|P37802|TAGL2_HUMAN
02 Jun 2020 05:40:36,571 INFO : 69% Done
02 Jun 2020 05:40:37,228 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:37,238 INFO : Inserting sp|P02656|APOC3_HUMAN
02 Jun 2020 05:40:37,252 INFO : 70% Done
02 Jun 2020 05:40:38,236 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:38,246 INFO : Inserting sp|P04278|SHBG_HUMAN
02 Jun 2020 05:40:38,260 INFO : 71% Done
02 Jun 2020 05:40:38,655 INFO : 72% Done
02 Jun 2020 05:40:38,979 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:38,988 INFO : Inserting sp|P00738|HPT_HUMAN
02 Jun 2020 05:40:39,332 INFO : 73% Done
02 Jun 2020 05:40:39,659 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:39,668 INFO : Inserting sp|P02763|A1AG1_HUMAN
02 Jun 2020 05:40:39,682 INFO : 74% Done
02 Jun 2020 05:40:40,691 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:40,702 INFO : Inserting sp|P00739|HPTR_HUMAN
02 Jun 2020 05:40:41,040 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:41,049 INFO : Inserting sp|P01876|IGHA1_HUMAN
02 Jun 2020 05:40:41,064 INFO : 75% Done
02 Jun 2020 05:40:41,397 INFO : 76% Done
02 Jun 2020 05:40:42,063 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:42,072 INFO : Inserting sp|P20851|C4BPB_HUMAN
02 Jun 2020 05:40:42,086 INFO : 77% Done
02 Jun 2020 05:40:42,425 INFO : 78% Done
02 Jun 2020 05:40:42,747 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:40:42,756 INFO : Inserting sp|P04196|HRG_HUMAN
02 Jun 2020 05:40:43,416 INFO : 79% Done
02 Jun 2020 05:40:43,736 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:40:43,746 INFO : Inserting sp|P20742|PZP_HUMAN
02 Jun 2020 05:40:44,075 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:44,084 INFO : Inserting sp|P36980|FHR2_HUMAN
02 Jun 2020 05:40:44,099 INFO : 80% Done
02 Jun 2020 05:40:44,434 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:40:44,435 INFO : Done parsing Skyline document.
02 Jun 2020 05:40:44,448 INFO : Calculating fold changes
02 Jun 2020 05:40:44,449 DEBUG: Calculating fold change for group comparison NP, 1 of 1
02 Jun 2020 05:40:53,307 INFO : 98% Done
02 Jun 2020 05:40:53,309 INFO : Done calculating fold changes.
02 Jun 2020 05:40:53,312 INFO : Creating and populating temp tables for Proportion values
02 Jun 2020 05:40:53,739 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Jun 2020 05:40:55,238 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Jun 2020 05:40:56,165 INFO : Cleaning up temp tables
02 Jun 2020 05:40:56,532 INFO : Completed import of Skyline document from STORI_COHORT_2020-06-02_14-14-43.sky.zip
02 Jun 2020 05:40:56,543 INFO : 100% Done
02 Jun 2020 05:40:56,627 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'