02 Jun 2020 05:39:34,426 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
02 Jun 2020 05:39:34,455 INFO : Starting to import Skyline document from Intra-day QC_2020-06-02_14-13-40.sky.zip
02 Jun 2020 05:39:34,457 INFO : Expanding Intra-day QC.skyd
02 Jun 2020 05:39:34,767 INFO : Expanding Intra-day QC.sky.view
02 Jun 2020 05:39:34,794 INFO : Expanding Intra-day QC.sky
02 Jun 2020 05:39:34,853 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
02 Jun 2020 05:39:34,861 INFO : 1% Done
02 Jun 2020 05:39:35,010 INFO : Inserting sp|P00450|CERU_HUMAN
02 Jun 2020 05:39:35,053 INFO : 2% Done
02 Jun 2020 05:39:35,083 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:35,092 INFO : Inserting sp|P00747|PLMN_HUMAN
02 Jun 2020 05:39:35,156 INFO : 3% Done
02 Jun 2020 05:39:35,185 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:35,194 INFO : Inserting sp|P59665|DEF1_HUMAN
02 Jun 2020 05:39:35,230 INFO : 4% Done
02 Jun 2020 05:39:35,260 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:35,269 INFO : Inserting sp|P01024|CO3_HUMAN
02 Jun 2020 05:39:35,276 INFO : 5% Done
02 Jun 2020 05:39:35,338 INFO : 6% Done
02 Jun 2020 05:39:35,367 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:35,376 INFO : Inserting sp|P02749|APOH_HUMAN
02 Jun 2020 05:39:35,436 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:35,444 INFO : Inserting sp|P02765|FETUA_HUMAN
02 Jun 2020 05:39:35,451 INFO : 7% Done
02 Jun 2020 05:39:35,480 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:35,490 INFO : Inserting sp|P02647|APOA1_HUMAN
02 Jun 2020 05:39:35,496 INFO : 8% Done
02 Jun 2020 05:39:35,560 INFO : 9% Done
02 Jun 2020 05:39:35,588 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:35,597 INFO : Inserting sp|O75882|ATRN_HUMAN
02 Jun 2020 05:39:35,604 INFO : 10% Done
02 Jun 2020 05:39:35,634 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:35,635 INFO : Inserting P07359
02 Jun 2020 05:39:35,665 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:35,674 INFO : Inserting sp|P55056|APOC4_HUMAN
02 Jun 2020 05:39:35,703 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:35,711 INFO : Inserting sp|P07358|CO8B_HUMAN
02 Jun 2020 05:39:35,734 INFO : 11% Done
02 Jun 2020 05:39:35,763 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:35,772 INFO : Inserting sp|O00187|MASP2_HUMAN
02 Jun 2020 05:39:35,801 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:35,809 INFO : Inserting sp|P02655|APOC2_HUMAN
02 Jun 2020 05:39:35,816 INFO : 12% Done
02 Jun 2020 05:39:35,843 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:35,855 INFO : Inserting sp|P02750|A2GL_HUMAN
02 Jun 2020 05:39:35,862 INFO : 13% Done
02 Jun 2020 05:39:35,926 INFO : 14% Done
02 Jun 2020 05:39:35,955 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:35,964 INFO : Inserting sp|P06681|CO2_HUMAN
02 Jun 2020 05:39:36,029 INFO : 15% Done
02 Jun 2020 05:39:36,059 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:36,068 INFO : Inserting sp|P02760|AMBP_HUMAN
02 Jun 2020 05:39:36,080 INFO : 16% Done
02 Jun 2020 05:39:36,139 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:36,147 INFO : Inserting sp|O75636|FCN3_HUMAN
02 Jun 2020 05:39:36,155 INFO : 17% Done
02 Jun 2020 05:39:36,183 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:36,191 INFO : Inserting sp|P05156|CFAI_HUMAN
02 Jun 2020 05:39:36,225 INFO : 18% Done
02 Jun 2020 05:39:36,253 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:36,262 INFO : Inserting sp|P07357|CO8A_HUMAN
02 Jun 2020 05:39:36,323 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:36,331 INFO : Inserting sp|P06276|CHLE_HUMAN
02 Jun 2020 05:39:36,338 INFO : 19% Done
02 Jun 2020 05:39:36,371 INFO : 20% Done
02 Jun 2020 05:39:36,399 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:36,407 INFO : Inserting sp|P10643|CO7_HUMAN
02 Jun 2020 05:39:36,444 INFO : 21% Done
02 Jun 2020 05:39:36,473 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:36,483 INFO : Inserting sp|P19827|ITIH1_HUMAN
02 Jun 2020 05:39:36,490 INFO : 22% Done
02 Jun 2020 05:39:36,578 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:36,587 INFO : Inserting sp|P02743|SAMP_HUMAN
02 Jun 2020 05:39:36,594 INFO : 23% Done
02 Jun 2020 05:39:36,658 INFO : 24% Done
02 Jun 2020 05:39:36,690 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:36,700 INFO : Inserting sp|P05452|TETN_HUMAN
02 Jun 2020 05:39:36,708 INFO : 25% Done
02 Jun 2020 05:39:36,770 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:36,779 INFO : Inserting sp|P02748|CO9_HUMAN
02 Jun 2020 05:39:36,787 INFO : 26% Done
02 Jun 2020 05:39:36,875 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:36,884 INFO : Inserting sp|P01031|CO5_HUMAN
02 Jun 2020 05:39:36,892 INFO : 27% Done
02 Jun 2020 05:39:36,954 INFO : 28% Done
02 Jun 2020 05:39:36,982 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:36,990 INFO : Inserting sp|P00751|CFAB_HUMAN
02 Jun 2020 05:39:36,997 INFO : 29% Done
02 Jun 2020 05:39:37,059 INFO : 30% Done
02 Jun 2020 05:39:37,087 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:37,095 INFO : Inserting sp|P10909|CLUS_HUMAN
02 Jun 2020 05:39:37,152 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:37,161 INFO : Inserting sp|P35858|ALS_HUMAN
02 Jun 2020 05:39:37,168 INFO : 31% Done
02 Jun 2020 05:39:37,225 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:37,231 INFO : 32% Done
02 Jun 2020 05:39:37,239 INFO : Inserting sp|P13671|CO6_HUMAN
02 Jun 2020 05:39:37,270 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:37,278 INFO : Inserting sp|P07996|TSP1_HUMAN
02 Jun 2020 05:39:37,285 INFO : 33% Done
02 Jun 2020 05:39:37,340 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:37,345 INFO : 34% Done
02 Jun 2020 05:39:37,353 INFO : Inserting sp|O14791|APOL1_HUMAN
02 Jun 2020 05:39:37,411 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:37,419 INFO : Inserting sp|P01011|AACT_HUMAN
02 Jun 2020 05:39:37,453 INFO : 35% Done
02 Jun 2020 05:39:37,486 INFO : 36% Done
02 Jun 2020 05:39:37,514 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:37,522 INFO : Inserting sp|P05155|IC1_HUMAN
02 Jun 2020 05:39:37,556 INFO : 37% Done
02 Jun 2020 05:39:37,589 INFO : 38% Done
02 Jun 2020 05:39:37,617 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:37,625 INFO : Inserting sp|P04004|VTNC_HUMAN
02 Jun 2020 05:39:37,683 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:37,691 INFO : Inserting sp|Q96KN2|CNDP1_HUMAN
02 Jun 2020 05:39:37,697 INFO : 39% Done
02 Jun 2020 05:39:37,753 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:37,761 INFO : Inserting sp|P19823|ITIH2_HUMAN
02 Jun 2020 05:39:37,768 INFO : 40% Done
02 Jun 2020 05:39:37,800 INFO : 41% Done
02 Jun 2020 05:39:37,828 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:37,837 INFO : Inserting sp|P05543|THBG_HUMAN
02 Jun 2020 05:39:37,866 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:37,874 INFO : Inserting sp|P36955|PEDF_HUMAN
02 Jun 2020 05:39:37,881 INFO : 42% Done
02 Jun 2020 05:39:37,964 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:37,972 INFO : Inserting sp|P00742|FA10_HUMAN
02 Jun 2020 05:39:37,979 INFO : 43% Done
02 Jun 2020 05:39:38,007 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:38,015 INFO : Inserting sp|P06396|GELS_HUMAN
02 Jun 2020 05:39:38,049 INFO : 44% Done
02 Jun 2020 05:39:38,077 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:38,085 INFO : Inserting sp|Q06033|ITIH3_HUMAN
02 Jun 2020 05:39:38,092 INFO : 45% Done
02 Jun 2020 05:39:38,120 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:38,128 INFO : Inserting sp|P07360|CO8G_HUMAN
02 Jun 2020 05:39:38,162 INFO : 46% Done
02 Jun 2020 05:39:38,218 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:38,226 INFO : Inserting sp|P29622|KAIN_HUMAN
02 Jun 2020 05:39:38,260 INFO : 47% Done
02 Jun 2020 05:39:38,316 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:38,324 INFO : Inserting sp|P02741|CRP_HUMAN
02 Jun 2020 05:39:38,331 INFO : 48% Done
02 Jun 2020 05:39:38,359 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:38,368 INFO : Inserting sp|P05546|HEP2_HUMAN
02 Jun 2020 05:39:38,374 INFO : 49% Done
02 Jun 2020 05:39:38,408 INFO : 50% Done
02 Jun 2020 05:39:38,436 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:38,444 INFO : Inserting sp|P51884|LUM_HUMAN
02 Jun 2020 05:39:38,504 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:38,513 INFO : Inserting sp|P00740|FA9_HUMAN
02 Jun 2020 05:39:38,521 INFO : 51% Done
02 Jun 2020 05:39:38,550 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:38,558 INFO : Inserting sp|P22792|CPN2_HUMAN
02 Jun 2020 05:39:38,593 INFO : 52% Done
02 Jun 2020 05:39:38,650 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:38,655 INFO : 53% Done
02 Jun 2020 05:39:38,664 INFO : Inserting sp|P08603|CFAH_HUMAN
02 Jun 2020 05:39:38,701 INFO : 54% Done
02 Jun 2020 05:39:38,757 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:38,766 INFO : Inserting sp|P35542|SAA4_HUMAN
02 Jun 2020 05:39:38,800 INFO : 55% Done
02 Jun 2020 05:39:38,856 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:38,864 INFO : Inserting sp|P0CF74|LAC6_HUMAN
02 Jun 2020 05:39:38,871 INFO : 56% Done
02 Jun 2020 05:39:38,929 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:38,938 INFO : Inserting sp|P01591|IGJ_HUMAN
02 Jun 2020 05:39:38,945 INFO : 57% Done
02 Jun 2020 05:39:38,978 INFO : 58% Done
02 Jun 2020 05:39:39,035 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:39,043 INFO : Inserting sp|P02652|APOA2_HUMAN
02 Jun 2020 05:39:39,073 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:39,081 INFO : Inserting sp|P02787|TRFE_HUMAN
02 Jun 2020 05:39:39,088 INFO : 59% Done
02 Jun 2020 05:39:39,148 INFO : 60% Done
02 Jun 2020 05:39:39,176 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:39,185 INFO : Inserting sp|P11226|MBL2_HUMAN
02 Jun 2020 05:39:39,192 INFO : 61% Done
02 Jun 2020 05:39:39,248 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:39,255 INFO : Inserting sp|P01625|KV402_HUMAN
02 Jun 2020 05:39:39,262 INFO : 62% Done
02 Jun 2020 05:39:39,346 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:39,354 INFO : Inserting sp|P14151|LYAM1_HUMAN
02 Jun 2020 05:39:39,361 INFO : 63% Done
02 Jun 2020 05:39:39,400 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:39,407 INFO : Inserting sp|P01765|HV304_HUMAN
02 Jun 2020 05:39:39,438 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:39,448 INFO : Inserting sp|P0DJI8|SAA1_HUMAN
02 Jun 2020 05:39:39,455 INFO : 64% Done
02 Jun 2020 05:39:39,484 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:39,493 INFO : Inserting sp|P00924|ENO1_YEAST
02 Jun 2020 05:39:39,501 INFO : 65% Done
02 Jun 2020 05:39:39,563 INFO : 66% Done
02 Jun 2020 05:39:39,648 DEBUG: Total peptides inserted: 5
02 Jun 2020 05:39:39,658 INFO : Inserting sp|P0C0L5|CO4B_HUMAN
02 Jun 2020 05:39:39,665 INFO : 67% Done
02 Jun 2020 05:39:39,699 INFO : 68% Done
02 Jun 2020 05:39:39,755 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:39,764 INFO : Inserting sp|P37802|TAGL2_HUMAN
02 Jun 2020 05:39:39,771 INFO : 69% Done
02 Jun 2020 05:39:39,827 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:39,836 INFO : Inserting sp|P02656|APOC3_HUMAN
02 Jun 2020 05:39:39,843 INFO : 70% Done
02 Jun 2020 05:39:39,927 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:39,936 INFO : Inserting sp|P04278|SHBG_HUMAN
02 Jun 2020 05:39:39,943 INFO : 71% Done
02 Jun 2020 05:39:39,977 INFO : 72% Done
02 Jun 2020 05:39:40,007 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:40,016 INFO : Inserting sp|P00738|HPT_HUMAN
02 Jun 2020 05:39:40,060 INFO : 73% Done
02 Jun 2020 05:39:40,089 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:40,098 INFO : Inserting sp|P02763|A1AG1_HUMAN
02 Jun 2020 05:39:40,105 INFO : 74% Done
02 Jun 2020 05:39:40,194 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:40,203 INFO : Inserting sp|P00739|HPTR_HUMAN
02 Jun 2020 05:39:40,210 INFO : 75% Done
02 Jun 2020 05:39:40,241 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:40,249 INFO : Inserting sp|P01876|IGHA1_HUMAN
02 Jun 2020 05:39:40,295 INFO : 76% Done
02 Jun 2020 05:39:40,331 INFO : 77% Done
02 Jun 2020 05:39:40,359 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:40,369 INFO : Inserting sp|P20851|C4BPB_HUMAN
02 Jun 2020 05:39:40,404 INFO : 78% Done
02 Jun 2020 05:39:40,433 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:40,442 INFO : Inserting sp|P04196|HRG_HUMAN
02 Jun 2020 05:39:40,507 INFO : 79% Done
02 Jun 2020 05:39:40,538 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:40,548 INFO : Inserting sp|P20742|PZP_HUMAN
02 Jun 2020 05:39:40,578 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:40,586 INFO : Inserting sp|P36980|FHR2_HUMAN
02 Jun 2020 05:39:40,594 INFO : 80% Done
02 Jun 2020 05:39:40,623 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:40,624 INFO : Done parsing Skyline document.
02 Jun 2020 05:39:40,630 INFO : Calculating fold changes
02 Jun 2020 05:39:40,631 DEBUG: Calculating fold change for group comparison NP, 1 of 1
02 Jun 2020 05:39:44,453 INFO : 98% Done
02 Jun 2020 05:39:44,454 INFO : Done calculating fold changes.
02 Jun 2020 05:39:44,457 INFO : Creating and populating temp tables for Proportion values
02 Jun 2020 05:39:44,505 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Jun 2020 05:39:44,684 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Jun 2020 05:39:44,816 INFO : Cleaning up temp tables
02 Jun 2020 05:39:45,331 INFO : Completed import of Skyline document from Intra-day QC_2020-06-02_14-13-40.sky.zip
02 Jun 2020 05:39:45,654 INFO : 100% Done
02 Jun 2020 05:39:45,740 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'