08 Oct 2020 05:58:44,678 INFO : Copying experiment "Quantification of HER2 by Immunopeptide Enrichment and Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded (FFPE) and Frozen Breast Cancer Tissues" from folder /Paulovich/HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM to /Panorama Public/2020/Paulovich - HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM
08 Oct 2020 05:58:44,678 INFO : =======================================
08 Oct 2020 06:05:48,269 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
08 Oct 2020 06:05:48,270 INFO :
08 Oct 2020 06:05:48,270 INFO : Exporting experiment.
08 Oct 2020 06:06:25,637 INFO :
08 Oct 2020 06:06:25,637 INFO : Experiment export completed successfully.
08 Oct 2020 06:06:25,637 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
08 Oct 2020 06:07:06,151 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
08 Oct 2020 06:07:06,152 INFO :
08 Oct 2020 06:07:06,152 INFO : Importing experiment.
08 Oct 2020 06:07:06,183 INFO : Loading folder properties (folder type, settings and active modules)
08 Oct 2020 06:07:06,322 INFO : Done importing folder properties (folder type, settings and active modules)
08 Oct 2020 06:07:06,329 INFO : Loading queries
08 Oct 2020 06:07:06,685 INFO : 6 queries imported
08 Oct 2020 06:07:06,686 INFO : Done importing queries
08 Oct 2020 06:07:06,692 INFO : Loading etl definitions
08 Oct 2020 06:07:06,698 INFO : Loading wikis
08 Oct 2020 06:07:06,701 INFO : 0 wikis imported
08 Oct 2020 06:07:06,701 INFO : Done importing wikis
08 Oct 2020 06:07:06,702 INFO : Starting to copy files
08 Oct 2020 06:07:21,162 INFO : Copied 610 files
08 Oct 2020 06:07:21,162 INFO : Ensuring exp.data rows exist for imported files
08 Oct 2020 06:07:27,663 INFO : Loading xar
08 Oct 2020 06:07:28,841 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip'
08 Oct 2020 06:07:28,844 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Core'
08 Oct 2020 06:07:28,847 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Output'
08 Oct 2020 06:07:28,847 DEBUG: Protocol import complete
08 Oct 2020 06:07:28,900 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-7698:Quantification+of+HER2+by+Immunopeptide+Enrichment+and+Targeted+Mass+Spectrometry+in+Formalin-Fixed+Paraffin-Embedded+%28FFPE%29+and+Frozen+Breast+Cancer+Tissues'
08 Oct 2020 06:07:28,900 DEBUG: Experiment/Run group import complete
08 Oct 2020 06:07:28,929 DEBUG: Protocol action set import complete
08 Oct 2020 06:07:28,944 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip'
08 Oct 2020 06:07:28,972 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7698:328ae6eb-ea36-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:28,978 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7698:f995497a-ea24-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:28,978 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Core'
08 Oct 2020 06:07:29,003 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Output'
08 Oct 2020 06:07:29,004 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7698:328aeb35-ea36-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,013 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip'
08 Oct 2020 06:07:29,020 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7698:102bac42-e984-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,026 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7698:102bac01-e984-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,026 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Core'
08 Oct 2020 06:07:29,029 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Output'
08 Oct 2020 06:07:29,030 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7698:aaaa703c-e987-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,038 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip'
08 Oct 2020 06:07:29,057 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7698:102b9757-e984-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,062 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7698:102b973c-e984-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,062 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Core'
08 Oct 2020 06:07:29,065 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Output'
08 Oct 2020 06:07:29,066 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7698:102b97dd-e984-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,076 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip'
08 Oct 2020 06:07:29,083 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7698:a7139f6f-e972-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,087 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7698:69ced1b5-e971-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,087 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Core'
08 Oct 2020 06:07:29,090 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7698:TargetedMS.ImportSkyZip.Output'
08 Oct 2020 06:07:29,091 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7698:a713a030-e972-1038-9455-3013bb9b8170'
08 Oct 2020 06:07:29,094 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93209/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank.skyd into the system
08 Oct 2020 06:07:29,095 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93209/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank.skyd into the system
08 Oct 2020 06:07:29,096 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93209/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37.sky.zip into the system
08 Oct 2020 06:07:29,098 INFO : Starting import from HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37.sky.zip
08 Oct 2020 06:07:29,102 INFO : Starting to import Skyline document from HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37.sky.zip
08 Oct 2020 06:07:29,115 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank.skyd
08 Oct 2020 06:07:29,424 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank.sky.view
08 Oct 2020 06:07:29,424 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank.sky
08 Oct 2020 06:07:29,509 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1
08 Oct 2020 06:07:29,531 INFO : 1% Done
08 Oct 2020 06:07:31,630 INFO : Inserting sp|P35555|FBN1_HUMAN
08 Oct 2020 06:07:31,706 INFO : 6% Done
08 Oct 2020 06:07:34,930 INFO : 10% Done
08 Oct 2020 06:07:36,897 INFO : 15% Done
08 Oct 2020 06:07:38,678 DEBUG: Total peptides inserted: 3
08 Oct 2020 06:07:38,785 INFO : Inserting sp|Q96Q06|PLIN4_HUMAN
08 Oct 2020 06:07:38,878 INFO : 20% Done
08 Oct 2020 06:07:40,632 INFO : 24% Done
08 Oct 2020 06:07:42,213 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:07:42,275 INFO : Inserting sp|P08575|PTPRC_HUMAN
08 Oct 2020 06:07:42,338 INFO : 28% Done
08 Oct 2020 06:07:43,970 INFO : 32% Done
08 Oct 2020 06:07:45,547 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:07:45,642 INFO : Inserting sp|P15090|FABP4_HUMAN
08 Oct 2020 06:07:45,760 INFO : 37% Done
08 Oct 2020 06:07:47,352 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:07:47,435 INFO : Inserting sp|P08729|K2C7_HUMAN
08 Oct 2020 06:07:47,529 INFO : 42% Done
08 Oct 2020 06:07:49,316 INFO : 46% Done
08 Oct 2020 06:07:51,513 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:07:51,595 INFO : Inserting sp|P13647|K2C5_HUMAN
08 Oct 2020 06:07:51,669 INFO : 51% Done
08 Oct 2020 06:07:55,310 INFO : 56% Done
08 Oct 2020 06:07:58,760 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:07:58,969 INFO : Inserting sp|P13611|CSPG2_HUMAN
08 Oct 2020 06:07:59,009 INFO : 60% Done
08 Oct 2020 06:08:00,636 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:00,720 INFO : Inserting sp|P04626|ERBB2_HUMAN
08 Oct 2020 06:08:00,777 INFO : 65% Done
08 Oct 2020 06:08:02,233 INFO : 69% Done
08 Oct 2020 06:08:03,957 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:08:04,102 INFO : Inserting sp|P68871|HBB_HUMAN
08 Oct 2020 06:08:04,227 INFO : 73% Done
08 Oct 2020 06:08:06,220 INFO : 76% Done
08 Oct 2020 06:08:08,090 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:08:08,190 INFO : Inserting sp|P16284|PECA1_HUMAN
08 Oct 2020 06:08:08,262 INFO : 79% Done
08 Oct 2020 06:08:09,983 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:10,120 INFO : Inserting sp|P68133|ACTS_HUMAN
08 Oct 2020 06:08:10,225 INFO : 83% Done
08 Oct 2020 06:08:12,018 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:12,077 INFO : Inserting sp|P07437|TBB5_HUMAN
08 Oct 2020 06:08:12,140 INFO : 87% Done
08 Oct 2020 06:08:13,809 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:13,813 INFO : Inserting sp|P04406|G3P_HUMAN
08 Oct 2020 06:08:13,836 INFO : 90% Done
08 Oct 2020 06:08:14,875 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:14,931 INFO : Inserting sp|P13645|K1C10_HUMAN
08 Oct 2020 06:08:14,975 INFO : 95% Done
08 Oct 2020 06:08:18,525 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:18,588 INFO : Inserting sp|P05787|K2C8_HUMAN
08 Oct 2020 06:08:18,676 INFO : 98% Done
08 Oct 2020 06:08:19,755 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:19,755 INFO : Done parsing Skyline document.
08 Oct 2020 06:08:19,757 INFO : Creating and populating temp tables for Proportion values
08 Oct 2020 06:08:19,876 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2020 06:08:20,807 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2020 06:08:21,136 INFO : Cleaning up temp tables
08 Oct 2020 06:08:21,650 INFO : Completed import of Skyline document from HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37.sky.zip
08 Oct 2020 06:08:21,657 INFO : 100% Done
08 Oct 2020 06:08:21,666 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93209/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37.sky.zip into the system
08 Oct 2020 06:08:21,666 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93164/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank.skyd into the system
08 Oct 2020 06:08:21,668 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93164/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank.skyd into the system
08 Oct 2020 06:08:21,669 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93164/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05.sky.zip into the system
08 Oct 2020 06:08:21,673 INFO : Starting import from HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05.sky.zip
08 Oct 2020 06:08:21,680 INFO : Starting to import Skyline document from HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05.sky.zip
08 Oct 2020 06:08:21,705 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank.skyd
08 Oct 2020 06:08:22,547 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank.sky.view
08 Oct 2020 06:08:22,548 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank.sky
08 Oct 2020 06:08:22,651 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1
08 Oct 2020 06:08:22,665 INFO : 1% Done
08 Oct 2020 06:08:24,559 INFO : Inserting sp|P35555|FBN1_HUMAN
08 Oct 2020 06:08:24,600 INFO : 6% Done
08 Oct 2020 06:08:26,641 INFO : 10% Done
08 Oct 2020 06:08:30,140 INFO : 15% Done
08 Oct 2020 06:08:33,625 DEBUG: Total peptides inserted: 3
08 Oct 2020 06:08:33,629 INFO : Inserting sp|Q96Q06|PLIN4_HUMAN
08 Oct 2020 06:08:33,659 INFO : 20% Done
08 Oct 2020 06:08:35,622 INFO : 24% Done
08 Oct 2020 06:08:37,634 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:08:37,638 INFO : Inserting sp|P08575|PTPRC_HUMAN
08 Oct 2020 06:08:37,669 INFO : 28% Done
08 Oct 2020 06:08:39,664 INFO : 32% Done
08 Oct 2020 06:08:41,842 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:08:41,847 INFO : Inserting sp|P15090|FABP4_HUMAN
08 Oct 2020 06:08:41,878 INFO : 37% Done
08 Oct 2020 06:08:44,263 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:44,267 INFO : Inserting sp|P08729|K2C7_HUMAN
08 Oct 2020 06:08:44,297 INFO : 42% Done
08 Oct 2020 06:08:46,187 INFO : 46% Done
08 Oct 2020 06:08:48,189 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:08:48,194 INFO : Inserting sp|P13647|K2C5_HUMAN
08 Oct 2020 06:08:48,225 INFO : 51% Done
08 Oct 2020 06:08:50,188 INFO : 56% Done
08 Oct 2020 06:08:52,206 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:08:52,211 INFO : Inserting sp|P13611|CSPG2_HUMAN
08 Oct 2020 06:08:52,242 INFO : 60% Done
08 Oct 2020 06:08:54,119 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:08:54,123 INFO : Inserting sp|P04626|ERBB2_HUMAN
08 Oct 2020 06:08:54,153 INFO : 65% Done
08 Oct 2020 06:08:57,014 INFO : 69% Done
08 Oct 2020 06:08:58,594 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:08:58,598 INFO : Inserting sp|P68871|HBB_HUMAN
08 Oct 2020 06:08:58,627 INFO : 73% Done
08 Oct 2020 06:09:00,175 INFO : 76% Done
08 Oct 2020 06:09:01,717 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:01,721 INFO : Inserting sp|P16284|PECA1_HUMAN
08 Oct 2020 06:09:01,749 INFO : 79% Done
08 Oct 2020 06:09:03,334 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:03,339 INFO : Inserting sp|P68133|ACTS_HUMAN
08 Oct 2020 06:09:03,366 INFO : 83% Done
08 Oct 2020 06:09:05,592 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:05,602 INFO : Inserting sp|P07437|TBB5_HUMAN
08 Oct 2020 06:09:05,662 INFO : 87% Done
08 Oct 2020 06:09:09,535 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:09,545 INFO : Inserting sp|P04406|G3P_HUMAN
08 Oct 2020 06:09:09,586 INFO : 90% Done
08 Oct 2020 06:09:12,913 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:12,922 INFO : Inserting sp|P13645|K1C10_HUMAN
08 Oct 2020 06:09:12,992 INFO : 95% Done
08 Oct 2020 06:09:16,810 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:16,820 INFO : Inserting sp|P05787|K2C8_HUMAN
08 Oct 2020 06:09:16,870 INFO : 98% Done
08 Oct 2020 06:09:20,165 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:20,165 INFO : Done parsing Skyline document.
08 Oct 2020 06:09:20,168 INFO : Creating and populating temp tables for Proportion values
08 Oct 2020 06:09:20,510 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2020 06:09:22,146 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2020 06:09:22,653 INFO : Cleaning up temp tables
08 Oct 2020 06:09:22,663 INFO : Completed import of Skyline document from HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05.sky.zip
08 Oct 2020 06:09:22,669 INFO : 100% Done
08 Oct 2020 06:09:22,679 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93164/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05.sky.zip into the system
08 Oct 2020 06:09:22,679 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93163/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama.skyd into the system
08 Oct 2020 06:09:22,681 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93163/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama.skyd into the system
08 Oct 2020 06:09:22,681 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93163/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58.sky.zip into the system
08 Oct 2020 06:09:22,684 INFO : Starting import from HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58.sky.zip
08 Oct 2020 06:09:22,688 INFO : Starting to import Skyline document from HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58.sky.zip
08 Oct 2020 06:09:22,691 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama.skyd
08 Oct 2020 06:09:22,763 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama.sky.view
08 Oct 2020 06:09:22,764 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama.sky
08 Oct 2020 06:09:22,786 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1
08 Oct 2020 06:09:22,793 INFO : 1% Done
08 Oct 2020 06:09:23,444 INFO : Inserting sp|P35555|FBN1_HUMAN
08 Oct 2020 06:09:23,467 INFO : 6% Done
08 Oct 2020 06:09:23,810 INFO : 11% Done
08 Oct 2020 06:09:24,153 INFO : 15% Done
08 Oct 2020 06:09:24,537 DEBUG: Total peptides inserted: 3
08 Oct 2020 06:09:24,541 INFO : Inserting sp|Q96Q06|PLIN4_HUMAN
08 Oct 2020 06:09:24,551 INFO : 20% Done
08 Oct 2020 06:09:24,943 INFO : 24% Done
08 Oct 2020 06:09:25,410 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:25,414 INFO : Inserting sp|P08575|PTPRC_HUMAN
08 Oct 2020 06:09:25,423 INFO : 28% Done
08 Oct 2020 06:09:25,831 INFO : 32% Done
08 Oct 2020 06:09:26,279 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:26,284 INFO : Inserting sp|P15090|FABP4_HUMAN
08 Oct 2020 06:09:26,293 INFO : 37% Done
08 Oct 2020 06:09:26,666 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:26,670 INFO : Inserting sp|P08729|K2C7_HUMAN
08 Oct 2020 06:09:26,679 INFO : 42% Done
08 Oct 2020 06:09:27,077 INFO : 46% Done
08 Oct 2020 06:09:27,492 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:27,498 INFO : Inserting sp|P13647|K2C5_HUMAN
08 Oct 2020 06:09:27,508 INFO : 51% Done
08 Oct 2020 06:09:27,974 INFO : 56% Done
08 Oct 2020 06:09:28,394 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:28,399 INFO : Inserting sp|P13611|CSPG2_HUMAN
08 Oct 2020 06:09:28,408 INFO : 60% Done
08 Oct 2020 06:09:29,324 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:29,335 INFO : Inserting sp|P04626|ERBB2_HUMAN
08 Oct 2020 06:09:29,353 INFO : 65% Done
08 Oct 2020 06:09:30,122 INFO : 69% Done
08 Oct 2020 06:09:30,649 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:30,653 INFO : Inserting sp|P68871|HBB_HUMAN
08 Oct 2020 06:09:30,665 INFO : 73% Done
08 Oct 2020 06:09:31,285 INFO : 76% Done
08 Oct 2020 06:09:31,821 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:31,828 INFO : Inserting sp|P16284|PECA1_HUMAN
08 Oct 2020 06:09:31,837 INFO : 79% Done
08 Oct 2020 06:09:32,317 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:32,323 INFO : Inserting sp|P68133|ACTS_HUMAN
08 Oct 2020 06:09:32,333 INFO : 83% Done
08 Oct 2020 06:09:32,909 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:32,915 INFO : Inserting sp|P07437|TBB5_HUMAN
08 Oct 2020 06:09:32,924 INFO : 87% Done
08 Oct 2020 06:09:33,518 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:33,524 INFO : Inserting sp|P04406|G3P_HUMAN
08 Oct 2020 06:09:33,543 INFO : 90% Done
08 Oct 2020 06:09:33,975 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:33,981 INFO : Inserting sp|P13645|K1C10_HUMAN
08 Oct 2020 06:09:33,991 INFO : 95% Done
08 Oct 2020 06:09:34,560 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:34,565 INFO : Inserting sp|P05787|K2C8_HUMAN
08 Oct 2020 06:09:34,574 INFO : 98% Done
08 Oct 2020 06:09:34,937 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:34,937 INFO : Done parsing Skyline document.
08 Oct 2020 06:09:34,939 INFO : Creating and populating temp tables for Proportion values
08 Oct 2020 06:09:34,997 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2020 06:09:35,331 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2020 06:09:35,456 INFO : Cleaning up temp tables
08 Oct 2020 06:09:36,292 INFO : Completed import of Skyline document from HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58.sky.zip
08 Oct 2020 06:09:36,300 INFO : 100% Done
08 Oct 2020 06:09:36,311 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93163/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58.sky.zip into the system
08 Oct 2020 06:09:36,311 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93156/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama.skyd into the system
08 Oct 2020 06:09:36,313 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93156/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama.skyd into the system
08 Oct 2020 06:09:36,313 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93156/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38.sky.zip into the system
08 Oct 2020 06:09:36,317 INFO : Starting import from HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38.sky.zip
08 Oct 2020 06:09:36,324 INFO : Starting to import Skyline document from HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38.sky.zip
08 Oct 2020 06:09:36,329 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama.skyd
08 Oct 2020 06:09:36,457 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama.sky.view
08 Oct 2020 06:09:36,457 INFO : Expanding HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama.sky
08 Oct 2020 06:09:36,497 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1
08 Oct 2020 06:09:36,511 INFO : 1% Done
08 Oct 2020 06:09:37,251 INFO : 2% Done
08 Oct 2020 06:09:37,262 INFO : Inserting sp|P35555|FBN1_HUMAN
08 Oct 2020 06:09:37,282 INFO : 6% Done
08 Oct 2020 06:09:38,103 INFO : 11% Done
08 Oct 2020 06:09:38,564 INFO : 15% Done
08 Oct 2020 06:09:38,832 DEBUG: Total peptides inserted: 3
08 Oct 2020 06:09:38,836 INFO : Inserting sp|Q96Q06|PLIN4_HUMAN
08 Oct 2020 06:09:38,844 INFO : 20% Done
08 Oct 2020 06:09:39,108 INFO : 24% Done
08 Oct 2020 06:09:39,366 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:39,370 INFO : Inserting sp|P08575|PTPRC_HUMAN
08 Oct 2020 06:09:39,377 INFO : 28% Done
08 Oct 2020 06:09:39,690 INFO : 32% Done
08 Oct 2020 06:09:39,956 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:39,960 INFO : Inserting sp|P15090|FABP4_HUMAN
08 Oct 2020 06:09:39,967 INFO : 37% Done
08 Oct 2020 06:09:40,225 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:40,229 INFO : Inserting sp|P08729|K2C7_HUMAN
08 Oct 2020 06:09:40,237 INFO : 42% Done
08 Oct 2020 06:09:40,515 INFO : 47% Done
08 Oct 2020 06:09:40,773 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:40,777 INFO : Inserting sp|P13647|K2C5_HUMAN
08 Oct 2020 06:09:40,785 INFO : 51% Done
08 Oct 2020 06:09:41,052 INFO : 56% Done
08 Oct 2020 06:09:41,323 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:41,327 INFO : Inserting sp|P13611|CSPG2_HUMAN
08 Oct 2020 06:09:41,335 INFO : 61% Done
08 Oct 2020 06:09:41,592 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:41,597 INFO : Inserting sp|P04626|ERBB2_HUMAN
08 Oct 2020 06:09:41,604 INFO : 65% Done
08 Oct 2020 06:09:41,864 INFO : 69% Done
08 Oct 2020 06:09:42,088 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:42,093 INFO : Inserting sp|P68871|HBB_HUMAN
08 Oct 2020 06:09:42,102 INFO : 73% Done
08 Oct 2020 06:09:42,328 INFO : 76% Done
08 Oct 2020 06:09:42,615 DEBUG: Total peptides inserted: 2
08 Oct 2020 06:09:42,619 INFO : Inserting sp|P16284|PECA1_HUMAN
08 Oct 2020 06:09:42,626 INFO : 80% Done
08 Oct 2020 06:09:42,904 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:42,909 INFO : Inserting sp|P68133|ACTS_HUMAN
08 Oct 2020 06:09:42,916 INFO : 83% Done
08 Oct 2020 06:09:43,173 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:43,177 INFO : Inserting sp|P07437|TBB5_HUMAN
08 Oct 2020 06:09:43,184 INFO : 87% Done
08 Oct 2020 06:09:43,438 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:43,443 INFO : Inserting sp|P04406|G3P_HUMAN
08 Oct 2020 06:09:43,449 INFO : 90% Done
08 Oct 2020 06:09:43,653 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:43,657 INFO : Inserting sp|P13645|K1C10_HUMAN
08 Oct 2020 06:09:43,665 INFO : 95% Done
08 Oct 2020 06:09:43,962 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:43,966 INFO : Inserting sp|P05787|K2C8_HUMAN
08 Oct 2020 06:09:43,972 INFO : 98% Done
08 Oct 2020 06:09:44,205 DEBUG: Total peptides inserted: 1
08 Oct 2020 06:09:44,205 INFO : Done parsing Skyline document.
08 Oct 2020 06:09:44,206 INFO : Creating and populating temp tables for Proportion values
08 Oct 2020 06:09:44,245 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Oct 2020 06:09:44,396 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Oct 2020 06:09:44,451 INFO : Cleaning up temp tables
08 Oct 2020 06:09:44,731 INFO : Completed import of Skyline document from HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38.sky.zip
08 Oct 2020 06:09:44,735 INFO : 100% Done
08 Oct 2020 06:09:44,741 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93156/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38.sky.zip into the system
08 Oct 2020 06:09:44,763 INFO : Done importing xar
08 Oct 2020 06:09:44,791 INFO : Loading pages and webpart properties
08 Oct 2020 06:09:44,911 INFO : Done importing pages and webpart properties
08 Oct 2020 06:09:44,911 INFO :
08 Oct 2020 06:09:44,911 INFO : Experiment import completed successfully.
08 Oct 2020 06:09:44,911 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
08 Oct 2020 06:09:44,951 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
08 Oct 2020 06:09:44,951 INFO :
08 Oct 2020 06:09:44,951 INFO : Finishing up experiment copy.
08 Oct 2020 06:09:44,952 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
08 Oct 2020 06:09:44,954 INFO : Assigning a ProteomeXchange ID.
08 Oct 2020 06:09:45,200 INFO : Updating access URL to point to the new copy of the data.
08 Oct 2020 06:09:45,239 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
08 Oct 2020 06:09:45,243 INFO : Removing copy permissions given to journal.
08 Oct 2020 06:09:45,295 INFO : Adding read permissions to all users that are folder admins in the source container.
08 Oct 2020 06:09:45,319 INFO : Setting the TargetedMS folder type to 'Experimental Data'
08 Oct 2020 06:09:45,335 INFO : Updating the 'Raw Data' tab configuration
08 Oct 2020 06:09:45,340 INFO : Updating dataFileUrls for run HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38.sky.zip; targetedms run ID 95463
08 Oct 2020 06:09:45,341 INFO : Updating dataFileUrl...
08 Oct 2020 06:09:45,341 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93156/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38.sky.zip
08 Oct 2020 06:09:45,341 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38.sky.zip
08 Oct 2020 06:09:45,346 INFO : Updating dataFileUrl...
08 Oct 2020 06:09:45,346 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93156/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama.skyd
08 Oct 2020 06:09:45,347 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama_2020-10-05_12-46-38/HER2_and_cellularity_23plex_breast_tumor_FFPE_process_QC_for_Panorama.skyd
08 Oct 2020 06:09:45,367 INFO : Updating dataFileUrls for run HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58.sky.zip; targetedms run ID 95462
08 Oct 2020 06:09:45,367 INFO : Updating dataFileUrl...
08 Oct 2020 06:09:45,367 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93163/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama.skyd
08 Oct 2020 06:09:45,368 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama.skyd
08 Oct 2020 06:09:45,372 INFO : Updating dataFileUrl...
08 Oct 2020 06:09:45,372 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93163/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58.sky.zip
08 Oct 2020 06:09:45,372 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_frozen_process_QC_for_Panorama_2020-10-05_15-10-58.sky.zip
08 Oct 2020 06:09:45,380 INFO : Updating dataFileUrls for run HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05.sky.zip; targetedms run ID 95461
08 Oct 2020 06:09:45,380 INFO : Updating dataFileUrl...
08 Oct 2020 06:09:45,380 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93164/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank.skyd
08 Oct 2020 06:09:45,381 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank.skyd
08 Oct 2020 06:09:45,385 INFO : Updating dataFileUrl...
08 Oct 2020 06:09:45,385 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93164/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05.sky.zip
08 Oct 2020 06:09:45,385 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_frozen_samples_for_Panorama_noblank_2020-10-05_15-24-05.sky.zip
08 Oct 2020 06:09:45,397 INFO : Updating dataFileUrls for run HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37.sky.zip; targetedms run ID 95460
08 Oct 2020 06:09:45,397 INFO : Updating dataFileUrl...
08 Oct 2020 06:09:45,397 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93209/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37.sky.zip
08 Oct 2020 06:09:45,397 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37.sky.zip
08 Oct 2020 06:09:45,402 INFO : Updating dataFileUrl...
08 Oct 2020 06:09:45,402 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM_681137a8-eb93-1038-9455-3013bb9b8170/_temp__2020-10-08_05-58-44/export/xar/experiments_and_runs.xar.exploded/Run93209/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank.skyd
08 Oct 2020 06:09:45,402 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Paulovich%20-%20HER2_cellularity_breast_cancer_tissue_frozen_FFPE_immunoMRM/@files/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank_2020-10-06_10-20-37/HER2_and_cellularity_23plex_breast_tumor_FFPE_samples_Panorama_noblank.skyd
08 Oct 2020 06:09:45,407 INFO : Creating a reviewer account.
08 Oct 2020 06:09:45,830 INFO : Created reviewer with email: User panorama+paulovich1@proteinms.net
08 Oct 2020 06:09:45,870 INFO : Hiding the Data Pipeline tab.
08 Oct 2020 06:09:46,045 INFO : Emailing submitter.
08 Oct 2020 06:09:46,700 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'