22 Jan 2019 10:57:44,032 INFO : Copying experiment "Pharmacokinetic analysis of a novel human EGFRvIII:CD3 bispecific antibody in plasma and whole blood using a high-resolution targeted mass spectroscopy approach" from folder /Duke Proteomics Core/SRM Quantitation Results/Pharmacokinetic analysis of a novel human bispecific antibody to /Panorama Public/2019/Duke Proteomics Core - Pharmacokinetic analysis of a novel human bispecific antibody
22 Jan 2019 10:57:44,033 INFO : =======================================
22 Jan 2019 10:57:44,386 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
22 Jan 2019 10:57:44,387 INFO :
22 Jan 2019 10:57:44,387 INFO : Exporting experiment.
22 Jan 2019 10:58:04,503 INFO :
22 Jan 2019 10:58:04,503 INFO : Experiment export completed successfully.
22 Jan 2019 10:58:04,503 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
22 Jan 2019 10:58:04,563 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
22 Jan 2019 10:58:04,564 INFO :
22 Jan 2019 10:58:04,564 INFO : Importing experiment.
22 Jan 2019 10:58:04,936 INFO : Loading folder properties (folder type, settings and active modules)
22 Jan 2019 10:58:05,087 INFO : Done importing folder properties (folder type, settings and active modules)
22 Jan 2019 10:58:05,095 INFO : Loading container specific module properties
22 Jan 2019 10:58:05,123 INFO : Done importing container specific module properties
22 Jan 2019 10:58:05,183 INFO : Loading xar
22 Jan 2019 10:58:05,365 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip'
22 Jan 2019 10:58:05,370 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip.Core'
22 Jan 2019 10:58:05,374 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip.Output'
22 Jan 2019 10:58:05,375 DEBUG: Protocol import complete
22 Jan 2019 10:58:05,427 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4890:Pharmacokinetic+analysis+of+a+novel+human+EGFRvIII%3ACD3+bispecific+antibody+in+plasma+and+whole+blood+using+a+high-resolution+targeted+mass+spectroscopy+approach'
22 Jan 2019 10:58:05,427 DEBUG: Experiment/Run group import complete
22 Jan 2019 10:58:05,445 DEBUG: Protocol action set import complete
22 Jan 2019 10:58:05,481 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip'
22 Jan 2019 10:58:05,622 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-4890:6d1f0bf2-fdcd-1036-af1e-3013bb9b1d59'
22 Jan 2019 10:58:05,647 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4890:6d1f0be0-fdcd-1036-af1e-3013bb9b1d59'
22 Jan 2019 10:58:05,647 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip.Core'
22 Jan 2019 10:58:05,652 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip.Output'
22 Jan 2019 10:58:05,652 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4890:6d1f0c74-fdcd-1036-af1e-3013bb9b1d59'
22 Jan 2019 10:58:05,669 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip'
22 Jan 2019 10:58:05,685 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-4890:6d1f09d6-fdcd-1036-af1e-3013bb9b1d59'
22 Jan 2019 10:58:05,690 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4890:6d1f09c4-fdcd-1036-af1e-3013bb9b1d59'
22 Jan 2019 10:58:05,690 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip.Core'
22 Jan 2019 10:58:05,693 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4890:TargetedMS.ImportSkyZip.Output'
22 Jan 2019 10:58:05,694 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4890:6d1f0a3e-fdcd-1036-af1e-3013bb9b1d59'
22 Jan 2019 10:58:05,696 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Duke%20Proteomics%20Core%20-%20Pharmacokinetic%20analysis%20of%20a%20novel%20human%20bispecific%20antibody/@files/export/xar/experiments_and_runs.xar.exploded/Run46172/Plasma_PK_bi_scFv_2019-01-18_23-51-46/Plasma_PK_bi_scFv.skyd into the system
22 Jan 2019 10:58:05,696 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Duke%20Proteomics%20Core%20-%20Pharmacokinetic%20analysis%20of%20a%20novel%20human%20bispecific%20antibody/@files/export/xar/experiments_and_runs.xar.exploded/Run46172/Plasma_PK_bi_scFv_2019-01-18_23-51-46/Plasma_PK_bi_scFv.skyd into the system
22 Jan 2019 10:58:05,697 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Duke%20Proteomics%20Core%20-%20Pharmacokinetic%20analysis%20of%20a%20novel%20human%20bispecific%20antibody/@files/export/xar/experiments_and_runs.xar.exploded/Run46172/Plasma_PK_bi_scFv_2019-01-18_23-51-46.sky.zip into the system
22 Jan 2019 10:58:05,699 INFO : Starting import from Plasma_PK_bi_scFv_2019-01-18_23-51-46.sky.zip
22 Jan 2019 10:58:05,706 INFO : Starting to import Skyline document from Plasma_PK_bi_scFv_2019-01-18_23-51-46.sky.zip
22 Jan 2019 10:58:05,707 INFO : Expanding 4747.blib
22 Jan 2019 10:58:05,707 INFO : Expanding Plasma_PK_bi_scFv.skyd
22 Jan 2019 10:58:05,734 INFO : Expanding Plasma_PK_bi_scFv.sky.view
22 Jan 2019 10:58:05,734 INFO : Expanding Plasma_PK_bi_scFv.sky
22 Jan 2019 10:58:05,742 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
22 Jan 2019 10:58:06,088 INFO : Inserting P00001|BiTE_Human
22 Jan 2019 10:58:18,059 INFO : Completed import of Skyline document from Plasma_PK_bi_scFv_2019-01-18_23-51-46.sky.zip
22 Jan 2019 10:58:18,068 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Duke%20Proteomics%20Core%20-%20Pharmacokinetic%20analysis%20of%20a%20novel%20human%20bispecific%20antibody/@files/export/xar/experiments_and_runs.xar.exploded/Run46172/Plasma_PK_bi_scFv_2019-01-18_23-51-46.sky.zip into the system
22 Jan 2019 10:58:18,068 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Duke%20Proteomics%20Core%20-%20Pharmacokinetic%20analysis%20of%20a%20novel%20human%20bispecific%20antibody/@files/export/xar/experiments_and_runs.xar.exploded/Run46171/WB_PK_bi_scFv_2019-01-18_23-49-08/WB_PK_bi_scFv.skyd into the system
22 Jan 2019 10:58:18,070 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Duke%20Proteomics%20Core%20-%20Pharmacokinetic%20analysis%20of%20a%20novel%20human%20bispecific%20antibody/@files/export/xar/experiments_and_runs.xar.exploded/Run46171/WB_PK_bi_scFv_2019-01-18_23-49-08/WB_PK_bi_scFv.skyd into the system
22 Jan 2019 10:58:18,071 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Duke%20Proteomics%20Core%20-%20Pharmacokinetic%20analysis%20of%20a%20novel%20human%20bispecific%20antibody/@files/export/xar/experiments_and_runs.xar.exploded/Run46171/WB_PK_bi_scFv_2019-01-18_23-49-08.sky.zip into the system
22 Jan 2019 10:58:18,076 INFO : Starting import from WB_PK_bi_scFv_2019-01-18_23-49-08.sky.zip
22 Jan 2019 10:58:18,081 INFO : Starting to import Skyline document from WB_PK_bi_scFv_2019-01-18_23-49-08.sky.zip
22 Jan 2019 10:58:18,084 INFO : Expanding 4747.blib
22 Jan 2019 10:58:18,085 INFO : Expanding WB_PK_bi_scFv.skyd
22 Jan 2019 10:58:18,125 INFO : Expanding WB_PK_bi_scFv.sky.view
22 Jan 2019 10:58:18,126 INFO : Expanding WB_PK_bi_scFv.sky
22 Jan 2019 10:58:18,144 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
22 Jan 2019 10:58:18,504 INFO : Inserting EGFRvIII:CD3 bi-scFv
22 Jan 2019 10:58:29,955 INFO : Completed import of Skyline document from WB_PK_bi_scFv_2019-01-18_23-49-08.sky.zip
22 Jan 2019 10:58:29,961 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Duke%20Proteomics%20Core%20-%20Pharmacokinetic%20analysis%20of%20a%20novel%20human%20bispecific%20antibody/@files/export/xar/experiments_and_runs.xar.exploded/Run46171/WB_PK_bi_scFv_2019-01-18_23-49-08.sky.zip into the system
22 Jan 2019 10:58:29,981 INFO : Done importing xar
22 Jan 2019 10:58:29,984 INFO : Loading wikis
22 Jan 2019 10:58:29,989 INFO : 0 wikis imported
22 Jan 2019 10:58:29,990 INFO : Done importing wikis
22 Jan 2019 10:58:34,326 INFO : Loading pages and webpart properties
22 Jan 2019 10:58:34,382 INFO : Done importing pages and webpart properties
22 Jan 2019 10:58:34,382 INFO :
22 Jan 2019 10:58:34,383 INFO : Experiment import completed successfully.
22 Jan 2019 10:58:34,383 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
22 Jan 2019 10:58:34,406 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
22 Jan 2019 10:58:34,406 INFO :
22 Jan 2019 10:58:34,406 INFO : Finishing up experiment copy.
22 Jan 2019 10:58:34,408 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
22 Jan 2019 10:58:34,486 INFO : Updating access URL to point to the new copy of the data.
22 Jan 2019 10:58:35,441 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'