01 Apr 2019 12:49:33,465 INFO : Copying experiment "IFI16 pyrin oligomerization mediates antiviral actions" from folder /Princeton University - Cristea Lab/IFI16 Oligomerization to /Panorama Public/2019/Cristea - IFI16 Oligomerization
01 Apr 2019 12:49:33,465 INFO : =======================================
01 Apr 2019 12:49:33,646 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
01 Apr 2019 12:49:33,646 INFO : 
01 Apr 2019 12:49:33,647 INFO : Exporting experiment.
01 Apr 2019 12:49:35,178 INFO : 
01 Apr 2019 12:49:35,179 INFO : Experiment export completed successfully.
01 Apr 2019 12:49:35,179 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
01 Apr 2019 12:49:35,249 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
01 Apr 2019 12:49:35,249 INFO : 
01 Apr 2019 12:49:35,249 INFO : Importing experiment.
01 Apr 2019 12:49:35,260 INFO : Loading folder properties (folder type, settings and active modules)
01 Apr 2019 12:49:35,459 INFO : Done importing folder properties (folder type, settings and active modules)
01 Apr 2019 12:49:35,467 INFO : Loading xar
01 Apr 2019 12:49:35,658 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5199:TargetedMS.ImportSkyZip'
01 Apr 2019 12:49:35,667 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5199:TargetedMS.ImportSkyZip.Core'
01 Apr 2019 12:49:35,675 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5199:TargetedMS.ImportSkyZip.Output'
01 Apr 2019 12:49:35,675 DEBUG: Protocol import complete
01 Apr 2019 12:49:35,723 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5199:IFI16+pyrin+oligomerization+mediates+antiviral+actions'
01 Apr 2019 12:49:35,723 DEBUG: Experiment/Run group import complete
01 Apr 2019 12:49:35,756 DEBUG: Protocol action set import complete
01 Apr 2019 12:49:35,799 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5199:TargetedMS.ImportSkyZip'
01 Apr 2019 12:49:35,973 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5199:c8273560-297e-1037-a6dd-3013bb9b5a14'
01 Apr 2019 12:49:35,987 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5199:c8273549-297e-1037-a6dd-3013bb9b5a14'
01 Apr 2019 12:49:35,988 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5199:TargetedMS.ImportSkyZip.Core'
01 Apr 2019 12:49:35,997 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5199:TargetedMS.ImportSkyZip.Output'
01 Apr 2019 12:49:35,999 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5199:c82735b9-297e-1037-a6dd-3013bb9b5a14'
01 Apr 2019 12:49:36,001 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Cristea%20-%20IFI16%20Oligomerization/@files/export/xar/experiments_and_runs.xar.exploded/Run59382/20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27/20181129_HFF1mut_IP_PRM.skyd into the system
01 Apr 2019 12:49:36,003 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Cristea%20-%20IFI16%20Oligomerization/@files/export/xar/experiments_and_runs.xar.exploded/Run59382/20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27/20181129_HFF1mut_IP_PRM.skyd into the system
01 Apr 2019 12:49:36,004 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Cristea%20-%20IFI16%20Oligomerization/@files/export/xar/experiments_and_runs.xar.exploded/Run59382/20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27.sky.zip into the system
01 Apr 2019 12:49:36,008 INFO : Starting import from 20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27.sky.zip
01 Apr 2019 12:49:36,023 INFO : Starting to import Skyline document from 20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27.sky.zip
01 Apr 2019 12:49:36,027 INFO : Expanding 20181129_HFF1mut_IP_PRM.skyd
01 Apr 2019 12:49:36,126 INFO : Expanding 20181129_HFF1mut_IP_PRM.sky.view
01 Apr 2019 12:49:36,127 INFO : Expanding 20181129_HFF1mut_IP_PRM.sky
01 Apr 2019 12:49:36,130 INFO : Expanding 20181129_HFF1mut_IP_PRM.skyl
01 Apr 2019 12:49:36,142 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
01 Apr 2019 12:49:36,598 INFO : Inserting sp|P29590|PML_HUMAN
01 Apr 2019 12:49:36,876 INFO : Total peptides inserted: 3
01 Apr 2019 12:49:36,983 INFO : Inserting sp|Q16666|IF16_HUMAN
01 Apr 2019 12:49:37,385 INFO : Total peptides inserted: 3
01 Apr 2019 12:49:37,473 INFO : Inserting sp|Q8N7H5|PAF1_HUMAN
01 Apr 2019 12:49:37,732 INFO : Total peptides inserted: 3
01 Apr 2019 12:49:37,807 INFO : Inserting sp|Q6P1J9|CDC73_HUMAN
01 Apr 2019 12:49:38,170 INFO : Total peptides inserted: 4
01 Apr 2019 12:49:38,248 INFO : Inserting sp|Q6PD62|CTR9_HUMAN
01 Apr 2019 12:49:38,476 INFO : Total peptides inserted: 2
01 Apr 2019 12:49:38,560 INFO : Inserting sp|Q9UER7|DAXX_HUMAN
01 Apr 2019 12:49:38,755 INFO : Total peptides inserted: 2
01 Apr 2019 12:49:38,828 INFO : Inserting sp|P17480|UBF1_HUMAN
01 Apr 2019 12:49:39,093 INFO : Total peptides inserted: 3
01 Apr 2019 12:49:42,394 INFO : Completed import of Skyline document from 20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27.sky.zip
01 Apr 2019 12:49:42,402 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Cristea%20-%20IFI16%20Oligomerization/@files/export/xar/experiments_and_runs.xar.exploded/Run59382/20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27.sky.zip into the system
01 Apr 2019 12:49:42,422 INFO : Done importing xar
01 Apr 2019 12:49:42,429 INFO : Loading wikis
01 Apr 2019 12:49:42,434 INFO : 0 wikis imported
01 Apr 2019 12:49:42,434 INFO : Done importing wikis
01 Apr 2019 12:49:42,486 INFO : Loading pages and webpart properties
01 Apr 2019 12:49:42,538 INFO : Done importing pages and webpart properties
01 Apr 2019 12:49:42,538 INFO : 
01 Apr 2019 12:49:42,539 INFO : Experiment import completed successfully.
01 Apr 2019 12:49:42,539 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
01 Apr 2019 12:49:42,645 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
01 Apr 2019 12:49:42,646 INFO : 
01 Apr 2019 12:49:42,646 INFO : Finishing up experiment copy.
01 Apr 2019 12:49:42,649 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
01 Apr 2019 12:49:42,860 INFO : Updating access URL to point to the new copy of the data.
01 Apr 2019 12:49:42,891 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
01 Apr 2019 12:49:42,893 INFO : Removing copy permissions given to journal.
01 Apr 2019 12:49:43,021 INFO : Adding read permissions to all users that are folder admins in the source container.
01 Apr 2019 12:49:43,042 INFO : Setting the TargetedMS folder type to 'Experimental Data'
01 Apr 2019 12:49:43,054 INFO : Updating the 'Raw Data' tab configuration
01 Apr 2019 12:49:43,063 INFO : Updating dataFileUrls for run 20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27.sky.zip; targetedms run ID 60974
01 Apr 2019 12:49:43,063 INFO : Updating dataFileUrl...
01 Apr 2019 12:49:43,064 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20-%20IFI16%20Oligomerization/@files/export/xar/experiments_and_runs.xar.exploded/Run59382/20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27.sky.zip
01 Apr 2019 12:49:43,064 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20-%20IFI16%20Oligomerization/@files/20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27.sky.zip
01 Apr 2019 12:49:43,071 INFO : Updating dataFileUrl...
01 Apr 2019 12:49:43,071 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20-%20IFI16%20Oligomerization/@files/export/xar/experiments_and_runs.xar.exploded/Run59382/20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27/20181129_HFF1mut_IP_PRM.skyd
01 Apr 2019 12:49:43,072 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20-%20IFI16%20Oligomerization/@files/20181129_HFF1mut_IP_PRM_2019-03-15_14-54-27/20181129_HFF1mut_IP_PRM.skyd
01 Apr 2019 12:49:43,103 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'