17 Sep 2018 21:30:46,266 INFO : Copying experiment "Carrier-assisted single-tube processing approach for targeted proteomics analysis of low numbers of mammalian cells" from folder /PNNL/Carrier-assisted LC-SRM to /Panorama Public/2018/PNNL - Carrier-assisted LC-SRM
17 Sep 2018 21:30:46,266 INFO : =======================================
17 Sep 2018 21:30:46,441 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
17 Sep 2018 21:30:46,442 INFO :
17 Sep 2018 21:30:46,443 INFO : Exporting experiment.
17 Sep 2018 21:30:48,750 INFO :
17 Sep 2018 21:30:48,751 INFO : Experiment export completed successfully.
17 Sep 2018 21:30:48,751 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
17 Sep 2018 21:30:48,774 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
17 Sep 2018 21:30:48,774 INFO :
17 Sep 2018 21:30:48,774 INFO : Importing experiment.
17 Sep 2018 21:30:48,781 INFO : Loading folder properties (folder type, settings and active modules)
17 Sep 2018 21:30:48,861 INFO : Done importing folder properties (folder type, settings and active modules)
17 Sep 2018 21:30:48,866 INFO : Loading container specific module properties
17 Sep 2018 21:30:48,873 INFO : Done importing container specific module properties
17 Sep 2018 21:30:48,878 INFO : Loading xar
17 Sep 2018 21:30:49,013 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip'
17 Sep 2018 21:30:49,020 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip.Core'
17 Sep 2018 21:30:49,026 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip.Output'
17 Sep 2018 21:30:49,027 DEBUG: Protocol import complete
17 Sep 2018 21:30:49,046 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4581:Carrier-assisted+single-tube+processing+approach+for+targeted+proteomics+analysis+of+low+numbers+of+mammalian+cells'
17 Sep 2018 21:30:49,046 DEBUG: Experiment/Run group import complete
17 Sep 2018 21:30:49,081 DEBUG: Protocol action set import complete
17 Sep 2018 21:30:49,103 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip'
17 Sep 2018 21:30:49,199 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4581:465d28b5-9c01-1036-a72c-3013bb9b911c'
17 Sep 2018 21:30:49,199 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip.Core'
17 Sep 2018 21:30:49,205 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip.Output'
17 Sep 2018 21:30:49,206 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4581:465d295f-9c01-1036-a72c-3013bb9b911c'
17 Sep 2018 21:30:49,218 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip'
17 Sep 2018 21:30:49,234 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4581:465d2a8c-9c01-1036-a72c-3013bb9b911c'
17 Sep 2018 21:30:49,234 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip.Core'
17 Sep 2018 21:30:49,238 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip.Output'
17 Sep 2018 21:30:49,239 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4581:465d2ab8-9c01-1036-a72c-3013bb9b911c'
17 Sep 2018 21:30:49,250 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip'
17 Sep 2018 21:30:49,263 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4581:465d2cb6-9c01-1036-a72c-3013bb9b911c'
17 Sep 2018 21:30:49,263 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip.Core'
17 Sep 2018 21:30:49,267 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4581:TargetedMS.ImportSkyZip.Output'
17 Sep 2018 21:30:49,268 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4581:465d2d2e-9c01-1036-a72c-3013bb9b911c'
17 Sep 2018 21:30:49,271 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/PNNL%20-%20Carrier-assisted%20LC-SRM/@files/export/xar/experiments_and_runs.xar.exploded/Run39120/Intact%20MCF7%20cells_2018-09-16_10-36-46.sky.zip into the system
17 Sep 2018 21:30:49,273 INFO : Starting import from Intact MCF7 cells_2018-09-16_10-36-46.sky.zip
17 Sep 2018 21:30:49,286 INFO : Starting to import Skyline document from Intact MCF7 cells_2018-09-16_10-36-46.sky.zip
17 Sep 2018 21:30:49,286 INFO : Expanding Intact MCF7 cells.skyd
17 Sep 2018 21:30:49,332 INFO : Expanding Intact MCF7 cells.sky.view
17 Sep 2018 21:30:49,332 INFO : Expanding Intact MCF7 cells.sky
17 Sep 2018 21:30:49,338 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1
17 Sep 2018 21:30:49,434 INFO : Inserting PEBP1
17 Sep 2018 21:30:49,768 INFO : Inserting ADAM17
17 Sep 2018 21:30:49,882 INFO : Inserting GRB2
17 Sep 2018 21:30:50,025 INFO : Inserting CBL
17 Sep 2018 21:30:50,340 INFO : Inserting PTPN11
17 Sep 2018 21:30:50,658 INFO : Inserting SOS1
17 Sep 2018 21:30:51,011 INFO : Inserting RAS
17 Sep 2018 21:30:51,158 INFO : Inserting HKRAS
17 Sep 2018 21:30:51,340 INFO : Inserting NRAS
17 Sep 2018 21:30:51,482 INFO : Inserting RASA1
17 Sep 2018 21:30:51,682 INFO : Inserting RAF1
17 Sep 2018 21:30:51,824 INFO : Inserting MAP2K2
17 Sep 2018 21:30:51,996 INFO : Inserting MAPK1
17 Sep 2018 21:30:52,380 INFO : Inserting ARAF
17 Sep 2018 21:30:52,527 INFO : Inserting AKT1
17 Sep 2018 21:30:52,620 INFO : Inserting PDPK1
17 Sep 2018 21:30:52,762 INFO : Inserting PIK3R1
17 Sep 2018 21:30:52,966 INFO : Inserting PIK3R2
17 Sep 2018 21:30:56,134 INFO : Completed import of Skyline document from Intact MCF7 cells_2018-09-16_10-36-46.sky.zip
17 Sep 2018 21:30:56,140 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/PNNL%20-%20Carrier-assisted%20LC-SRM/@files/export/xar/experiments_and_runs.xar.exploded/Run39120/Intact%20MCF7%20cells_2018-09-16_10-36-46.sky.zip into the system
17 Sep 2018 21:30:56,140 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/PNNL%20-%20Carrier-assisted%20LC-SRM/@files/export/xar/experiments_and_runs.xar.exploded/Run39121/Processing%20reproducibility%20of%20cLC-SRM_2018-09-16_10-38-22.sky.zip into the system
17 Sep 2018 21:30:56,143 INFO : Starting import from Processing reproducibility of cLC-SRM_2018-09-16_10-38-22.sky.zip
17 Sep 2018 21:30:56,147 INFO : Starting to import Skyline document from Processing reproducibility of cLC-SRM_2018-09-16_10-38-22.sky.zip
17 Sep 2018 21:30:56,147 INFO : Expanding Processing reproducibility of cLC-SRM.skyd
17 Sep 2018 21:30:56,156 INFO : Expanding Processing reproducibility of cLC-SRM.sky.view
17 Sep 2018 21:30:56,157 INFO : Expanding Processing reproducibility of cLC-SRM.sky
17 Sep 2018 21:30:56,159 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1
17 Sep 2018 21:30:56,192 INFO : Inserting PEBP1
17 Sep 2018 21:30:56,224 INFO : Inserting GRB2
17 Sep 2018 21:30:56,250 INFO : Inserting PTPN11
17 Sep 2018 21:30:56,309 INFO : Inserting RAS
17 Sep 2018 21:30:56,340 INFO : Inserting HKRAS
17 Sep 2018 21:30:56,371 INFO : Inserting NRAS
17 Sep 2018 21:30:56,460 INFO : Inserting ARAF
17 Sep 2018 21:30:56,481 INFO : Inserting MAP2K2
17 Sep 2018 21:30:56,502 INFO : Inserting MAPK1
17 Sep 2018 21:30:56,522 INFO : Inserting AKT1
17 Sep 2018 21:30:59,321 INFO : Completed import of Skyline document from Processing reproducibility of cLC-SRM_2018-09-16_10-38-22.sky.zip
17 Sep 2018 21:30:59,326 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/PNNL%20-%20Carrier-assisted%20LC-SRM/@files/export/xar/experiments_and_runs.xar.exploded/Run39121/Processing%20reproducibility%20of%20cLC-SRM_2018-09-16_10-38-22.sky.zip into the system
17 Sep 2018 21:30:59,326 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/PNNL%20-%20Carrier-assisted%20LC-SRM/@files/export/xar/experiments_and_runs.xar.exploded/Run39122/Calibration%20curves_2018-09-16_10-39-16.sky.zip into the system
17 Sep 2018 21:30:59,328 INFO : Starting import from Calibration curves_2018-09-16_10-39-16.sky.zip
17 Sep 2018 21:30:59,331 INFO : Starting to import Skyline document from Calibration curves_2018-09-16_10-39-16.sky.zip
17 Sep 2018 21:30:59,331 INFO : Expanding Calibration curves.skyd
17 Sep 2018 21:30:59,391 INFO : Expanding Calibration curves.sky.view
17 Sep 2018 21:30:59,391 INFO : Expanding Calibration curves.sky
17 Sep 2018 21:30:59,395 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1
17 Sep 2018 21:30:59,483 INFO : Inserting PEBP1
17 Sep 2018 21:30:59,813 INFO : Inserting CBL
17 Sep 2018 21:31:00,171 INFO : Inserting ADAM17
17 Sep 2018 21:31:00,277 INFO : Inserting GRB2
17 Sep 2018 21:31:00,506 INFO : Inserting PTPN11
17 Sep 2018 21:31:00,836 INFO : Inserting RAS
17 Sep 2018 21:31:01,023 INFO : Inserting HKRAS
17 Sep 2018 21:31:01,192 INFO : Inserting NRAS
17 Sep 2018 21:31:01,355 INFO : Inserting MAP2K2
17 Sep 2018 21:31:01,583 INFO : Inserting AKT1
17 Sep 2018 21:31:04,670 INFO : Completed import of Skyline document from Calibration curves_2018-09-16_10-39-16.sky.zip
17 Sep 2018 21:31:04,674 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/PNNL%20-%20Carrier-assisted%20LC-SRM/@files/export/xar/experiments_and_runs.xar.exploded/Run39122/Calibration%20curves_2018-09-16_10-39-16.sky.zip into the system
17 Sep 2018 21:31:04,708 INFO : Done importing xar
17 Sep 2018 21:31:04,712 INFO : Loading wikis
17 Sep 2018 21:31:04,715 INFO : 0 wikis imported
17 Sep 2018 21:31:04,716 INFO : Done importing wikis
17 Sep 2018 21:31:04,852 INFO : Loading pages and webpart properties
17 Sep 2018 21:31:04,944 INFO : Done importing pages and webpart properties
17 Sep 2018 21:31:04,944 INFO :
17 Sep 2018 21:31:04,944 INFO : Experiment import completed successfully.
17 Sep 2018 21:31:04,944 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
17 Sep 2018 21:31:04,953 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
17 Sep 2018 21:31:04,954 INFO :
17 Sep 2018 21:31:04,954 INFO : Finishing up experiment copy.
17 Sep 2018 21:31:04,955 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
17 Sep 2018 21:31:05,146 INFO : Updating access URL to point to the new copy of the data.
17 Sep 2018 21:31:05,321 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'