BSA_method_dev.sky.zip

Method Dev
Protein Note/Annotations
 
gi|1351907|sp|P02769.4|ALBU_BOVINRecName: Full=Serum albumin; AltName: Full=BSA; AltName: Allergen=Bos d 6; Flags: Precursor
Peptide Note/Annotations
Precursor Note/Annotations
FKDLGEEHFK
Removed: false11248.6139 
FKDLGEEHFK
Removed: falselight2+625.31421248.61391124.5747 
FKDLGEEHFK
Removed: false11248.6139 
FKDLGEEHFK
Note: Not sure why this precursor was the one remove, as it is slightly more intense.
Removed: true
light3+417.21191248.61391121.6713 
DLGEEHFK
Note: Fragment ion signal is higher than precursor ion signal, making this a questionable match.
Peptide Quality: Potentially
Removed: true
0973.4505 
DLGEEHFK
Removed: falselight2+487.7325973.4505819.8969 
LVNELTEFAK
Removed: false01162.6234 
LVNELTEFAK
Removed: falselight2+582.31901162.62341123.1128 
TCVADESHAGCEK
Removed: false01462.5817 
TCVADESHAGCEK
Removed: falselight2+732.29811462.58171128.2121 
TCVADESHAGCEK
Removed: false01462.5817 
TCVADESHAGCEK
Note: Not sure why this precursor was removed.
Removed: true
light3+488.53451462.58171124.8095 
SLHTLFGDELCK
Removed: false01418.6864 
SLHTLFGDELCK
Removed: falselight2+710.35051418.68641127.4659 
SLHTLFGDELCK
Removed: false01418.6864 
SLHTLFGDELCK
Removed: falselight3+473.90271418.68641124.1657 
ETYGDMADCCEK
Removed: false01477.5160 
ETYGDMADCCEK
Removed: falselight2+739.76531477.51601128.4660 
NECFLSHK
Note: Interference and high precursor mass error make this one questionable, but only in 100nM
Peptide Quality: Potentially
Removed: true
01033.4651 
NECFLSHK
Removed: falselight2+517.73981033.4651820.9172 
NECFLSHKDDSPDLPK
Removed: false11900.8625 
NECFLSHKDDSPDLPK
Removed: falselight3+634.62811900.86251131.2376 
DDSPDLPK
Note: Product signal is much better at 40, 41 and 43 minutes, but no precursor signal. At 26 minutes there is precursor signal, but with 15 ppm mass error and less well defined product signal. This is at least likely a modified peptide and difficult to measure.
Peptide Quality: Potentially
Removed: true
0885.4080 
DDSPDLPK
Removed: falselight2+443.7113885.4080818.4002 
LKPDPNTLCDEFK
Removed: false01575.7603 
LKPDPNTLCDEFK
Removed: falselight2+788.88741575.76031130.1362 
LKPDPNTLCDEFK
Removed: false01575.7603 
LKPDPNTLCDEFK
Removed: falselight3+526.26071575.76031126.4695 
LKPDPNTLCDEFKADEK
Removed: false12018.9619 
LKPDPNTLCDEFKADEK
Removed: falselight3+673.99462018.96191132.9698 
RHPYFYAPELLYYANK
Note: No believable precursor signal and low dotp value make this detection unlikely.
Peptide Quality: Bad
Removed: true
12044.0207 
RHPYFYAPELLYYANK
Removed: falselight3+682.34752044.02071133.3373 
HPYFYAPELLYYANK
Note: The most believable peak with idotp=0.99 and dotp=0.9 has low and poorly co-eluting signal on the product ions.
Peptide Quality: Potentially
Removed: true
01887.9196 
HPYFYAPELLYYANK
Removed: falselight3+630.31381887.91961131.0478 
AEFVEVTK
Removed: false0921.4807 
AEFVEVTK
Removed: falselight2+461.7477921.4807919.0134 
ECCHGDLLECADDR
Removed: false01748.6553 
ECCHGDLLECADDR
Removed: falselight3+583.89241748.65531129.0053 
ECCHGDLLECADDRADLAK
Removed: false12246.9355 
ECCHGDLLECADDRADLAK
Removed: falselight3+749.98582246.93551136.3134 
YICDNQDTISSK
Removed: false01442.6348 
YICDNQDTISSK
Removed: falselight2+722.32471442.63481127.8730 
LKECCDKPLLEK
Removed: false11531.7738 
LKECCDKPLLEK
Removed: falselight2+766.89421531.77381129.3884 
LKECCDKPLLEK
Removed: false11531.7738 
LKECCDKPLLEK
Removed: falselight3+511.59861531.77381125.8243 
ECCDKPLLEK
Removed: false01290.5948 
ECCDKPLLEK
Removed: falselight2+646.30471290.5948925.2884 
ECCDKPLLEK
Removed: false01290.5948 
ECCDKPLLEK
Note: Not sure why this precursor was removed.
Removed: false
light3+431.20551290.5948822.2870 
SHCIAEVEK
Removed: false01071.5019 
SHCIAEVEK
Removed: falselight2+536.75821071.50191121.5638 
DAFLGSFLYEYSR
Removed: false01566.7355 
DAFLGSFLYEYSR
Removed: falselight2+784.37501566.73551129.9827 
RHPEYAVSVLLR
Removed: false11438.8045 
RHPEYAVSVLLR
Removed: falselight2+720.40951438.80451127.8079 
RHPEYAVSVLLR
Removed: false11438.8045 
RHPEYAVSVLLR
Removed: falselight3+480.60881438.80451124.4608 
HPEYAVSVLLR
Removed: false01282.7034 
HPEYAVSVLLR
Removed: falselight2+642.35901282.7034925.1542 
HPEYAVSVLLR
Removed: false01282.7034 
HPEYAVSVLLR
Note: Removed because of lack of precursor signal.
Removed: true
light3+428.57511282.7034922.1713 
EYEATLEECCAK
Removed: false01501.6065 
EYEATLEECCAK
Removed: falselight2+751.81051501.60651128.8756 
DDPHACYSTVFDK
Removed: false01553.6457 
DDPHACYSTVFDK
Removed: falselight2+777.83011553.64571129.7602 
DDPHACYSTVFDK
Removed: false01553.6457 
DDPHACYSTVFDK
Note: Note sure why this was removed.
Removed: true
light3+518.88921553.64571126.1451 
HLVDEPQNLIK
Removed: false01304.7089 
HLVDEPQNLIK
Removed: falselight2+653.36171304.70891125.5283 
HLVDEPQNLIK
Removed: false01304.7089 
HLVDEPQNLIK
Note: Removed because fragment signal is higher than precursor signal, but this could be due to lack of charge state separation of the fragments. Might even be an interesting case for IMS.
Removed: true
light3+435.91021304.70891122.4940 
QNCDQFEK
Note: The best precursor peak with idotp=0.99 has noisy product ion signal with only dotp=0.77.
Peptide Quality: Potentially
Removed: true
01067.4342 
QNCDQFEK
Removed: falselight2+534.72441067.4342821.4946 
LGEYGFQNALIVR
Removed: false01478.7882 
LGEYGFQNALIVR
Removed: falselight2+740.40141478.78821128.4876 
KVPQVSTPTLVEVSR
Removed: false11638.9305 
KVPQVSTPTLVEVSR
Removed: falselight3+547.31741638.93051127.3960 
VPQVSTPTLVEVSR
Removed: false01510.8355 
VPQVSTPTLVEVSR
Removed: falselight2+756.42501510.83551029.0325 
CCTKPESER
Note: The most believable precursor ion with idotp=0.99 and mass error 3.6 ppm has poorly formed product ion signal, though dotp=0.87 and mass error 1.3 ppm.
Peptide Quality: Potentially
Removed: true
01165.4856 
CCTKPESER
Removed: falselight2+583.75011165.4856723.1615 
MPCTEDYLSLILNR
Removed: false01723.8273 
MPCTEDYLSLILNR
Removed: falselight3+575.61641723.82731128.6411 
LCVLHEK
Removed: false0897.4742 
LCVLHEK
Removed: falselight2+449.7444897.4742818.6053 
CCTESLVNR
Removed: false01137.4907 
CCTESLVNR
Removed: falselight2+569.75261137.4907922.6856 
RPCFSALTPDETYVPK
Removed: false01879.9138 
RPCFSALTPDETYVPK
Removed: falselight3+627.64521879.91381130.9304 
LFTFHADICTLPDTEK
Removed: false01906.9135 
LFTFHADICTLPDTEK
Removed: falselight3+636.64511906.91351131.3264 
KQTALVELLK
Removed: false11141.7071 
KQTALVELLK
Removed: falselight2+571.86081141.70711122.7573 
QTALVELLK
Removed: false01013.6121 
QTALVELLK
Removed: falselight2+507.81331013.6121920.5797 
ATEEQLK
Note: No believable precursor-product combination.
Peptide Quality: Bad
Removed: true
0817.4181 
ATEEQLK
Removed: falselight2+409.7163817.4181617.2444 
TVMENFVAFVDK
Removed: false01398.6853 
TVMENFVAFVDK
Removed: falselight2+700.34991398.68531127.1259 
TVMENFVAFVDK
Removed: false01398.6853 
TVMENFVAFVDK
Note: Removed because of lack of precursor signal.
Removed: true
light3+467.23571398.6853723.8724 
CCAADDKEACFAVEGPK
Removed: false11926.7910 
CCAADDKEACFAVEGPK
Removed: falselight3+643.27091926.79101131.6179 
EACFAVEGPK
Removed: false01106.5066 
EACFAVEGPK
Removed: falselight2+554.26061106.50661022.1589 
LVVSTQTALA
Note: Not easy to understand why this was removed, except that its fragments are all b-ions starting with b3. Signal looks acceptable on both precursor with idotp=0.99 a little high mass error of 13.4 ppm, and product signal at 50,000 looks acceptably high and well formed, with dotp=0.82 and mass error of 5.7 ppm.
Peptide Quality: Good
Removed: true
01001.5757 
LVVSTQTALA
Removed: falselight2+501.79511001.5757620.3750