05 Jul 2018 08:23:58,020 INFO : Copying experiment "Streptococcus pyogenes evades adaptive immunity through specific modification of host IgG glycosylation" from folder /Lund University IMP/EndoS to /Panorama Public/2018/Lund University IMP - EndoS
05 Jul 2018 08:23:58,021 INFO : =======================================
05 Jul 2018 08:23:58,106 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
05 Jul 2018 08:23:58,108 INFO :
05 Jul 2018 08:23:58,108 INFO : Exporting experiment.
05 Jul 2018 08:24:08,144 INFO :
05 Jul 2018 08:24:08,144 INFO : Experiment export completed successfully.
05 Jul 2018 08:24:08,144 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
05 Jul 2018 08:24:08,165 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
05 Jul 2018 08:24:08,165 INFO :
05 Jul 2018 08:24:08,165 INFO : Importing experiment.
05 Jul 2018 08:24:08,171 INFO : Loading folder properties (folder type, settings and active modules)
05 Jul 2018 08:24:08,268 INFO : Done importing folder properties (folder type, settings and active modules)
05 Jul 2018 08:24:08,274 INFO : Loading container specific module properties
05 Jul 2018 08:24:08,284 INFO : Done importing container specific module properties
05 Jul 2018 08:24:08,295 INFO : Loading wikis
05 Jul 2018 08:24:08,299 INFO : 0 wikis imported
05 Jul 2018 08:24:08,299 INFO : Done importing wikis
05 Jul 2018 08:24:08,305 INFO : Loading xar
05 Jul 2018 08:24:08,311 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4237:Streptococcus+pyogenes+evades+adaptive+immunity+through+specific+modification+of+host+IgG+glycosylation'
05 Jul 2018 08:24:08,311 DEBUG: Experiment/Run group import complete
05 Jul 2018 08:24:08,312 INFO : Done importing xar
05 Jul 2018 08:24:08,478 INFO : Loading pages and webpart properties
05 Jul 2018 08:24:08,543 INFO : Done importing pages and webpart properties
05 Jul 2018 08:24:08,549 INFO : Loading subfolders and container tabs
05 Jul 2018 08:24:08,667 INFO : New container created with inherited permissions for human samples
05 Jul 2018 08:24:08,667 INFO : Loading folder archive for human samples
05 Jul 2018 08:24:08,689 INFO : Loading folder properties (folder type, settings and active modules)
05 Jul 2018 08:24:08,761 INFO : Done importing folder properties (folder type, settings and active modules)
05 Jul 2018 08:24:08,766 INFO : Loading container specific module properties
05 Jul 2018 08:24:08,777 INFO : Done importing container specific module properties
05 Jul 2018 08:24:08,782 INFO : Loading wikis
05 Jul 2018 08:24:08,782 INFO : 0 wikis imported
05 Jul 2018 08:24:08,783 INFO : Done importing wikis
05 Jul 2018 08:24:08,788 INFO : Loading xar
05 Jul 2018 08:24:09,716 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:09,719 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:09,721 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:09,721 DEBUG: Protocol import complete
05 Jul 2018 08:24:09,735 DEBUG: Protocol action set import complete
05 Jul 2018 08:24:09,739 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:09,740 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4225:' loaded for Data object.
05 Jul 2018 08:24:09,940 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4238:05b03748-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,940 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:09,943 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:09,943 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4238:05b03769-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,946 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:09,947 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4225:' loaded for Data object.
05 Jul 2018 08:24:09,952 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4238:05b03654-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,952 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:09,954 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:09,955 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4238:05b0367e-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,957 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:09,958 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4225:' loaded for Data object.
05 Jul 2018 08:24:09,963 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4238:05b032ae-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,963 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:09,965 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:09,966 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4238:05b032f6-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,968 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:09,970 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4225:' loaded for Data object.
05 Jul 2018 08:24:09,975 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4238:05b030e8-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,975 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:09,977 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:09,978 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4238:05b0312b-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,981 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:09,983 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4225:' loaded for Data object.
05 Jul 2018 08:24:09,990 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4238:05b02dc5-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,990 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:09,992 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4238:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:09,992 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4238:05b02e04-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:09,994 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33735/SRM_method_validaiton_2018-07-03_11-30-14.sky.zip into the system
05 Jul 2018 08:24:09,995 INFO : Starting import from SRM_method_validaiton_2018-07-03_11-30-14.sky.zip
05 Jul 2018 08:24:10,002 INFO : Starting to import Skyline document from SRM_method_validaiton_2018-07-03_11-30-14.sky.zip
05 Jul 2018 08:24:10,002 INFO : Expanding hIgG_Speclib.blib
05 Jul 2018 08:24:10,003 INFO : Expanding IgG_EndoS_MaxQ.blib
05 Jul 2018 08:24:10,003 INFO : Expanding SRM_method_validaiton.skyd
05 Jul 2018 08:24:10,103 INFO : Expanding SRM_method_validaiton.sky.view
05 Jul 2018 08:24:10,103 INFO : Expanding SRM_method_validaiton.sky
05 Jul 2018 08:24:10,595 INFO : Inserting rt peptides
05 Jul 2018 08:24:11,865 INFO : Inserting IGHG1
05 Jul 2018 08:24:12,824 INFO : Inserting IGHG2
05 Jul 2018 08:24:13,774 INFO : Inserting IGHG3
05 Jul 2018 08:24:14,827 INFO : Inserting IGHG4
05 Jul 2018 08:24:16,776 INFO : Completed import of Skyline document from SRM_method_validaiton_2018-07-03_11-30-14.sky.zip
05 Jul 2018 08:24:16,830 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33735/SRM_method_validaiton_2018-07-03_11-30-14.sky.zip into the system
05 Jul 2018 08:24:16,830 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33736/GAS_NF_wound%20samples_2018-07-03_11-27-21.sky.zip into the system
05 Jul 2018 08:24:16,832 INFO : Starting import from GAS_NF_wound samples_2018-07-03_11-27-21.sky.zip
05 Jul 2018 08:24:16,837 INFO : Starting to import Skyline document from GAS_NF_wound samples_2018-07-03_11-27-21.sky.zip
05 Jul 2018 08:24:16,837 INFO : Expanding hIgG_Speclib.blib
05 Jul 2018 08:24:16,838 INFO : Expanding IgG_EndoS_MaxQ.blib
05 Jul 2018 08:24:16,838 INFO : Expanding GAS_NF_wound samples.skyd
05 Jul 2018 08:24:16,863 INFO : Expanding GAS_NF_wound samples.sky.view
05 Jul 2018 08:24:16,863 INFO : Expanding GAS_NF_wound samples.sky
05 Jul 2018 08:24:16,932 INFO : Inserting rt peptides
05 Jul 2018 08:24:17,166 INFO : Inserting IGHG1
05 Jul 2018 08:24:17,363 INFO : Inserting IGHG2
05 Jul 2018 08:24:17,547 INFO : Inserting IGHG3
05 Jul 2018 08:24:17,790 INFO : Inserting IGHG4
05 Jul 2018 08:24:19,291 INFO : Completed import of Skyline document from GAS_NF_wound samples_2018-07-03_11-27-21.sky.zip
05 Jul 2018 08:24:19,299 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33736/GAS_NF_wound%20samples_2018-07-03_11-27-21.sky.zip into the system
05 Jul 2018 08:24:19,299 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33737/hIgG_dilution_series_2018-07-03_11-18-11.sky.zip into the system
05 Jul 2018 08:24:19,301 INFO : Starting import from hIgG_dilution_series_2018-07-03_11-18-11.sky.zip
05 Jul 2018 08:24:19,306 INFO : Starting to import Skyline document from hIgG_dilution_series_2018-07-03_11-18-11.sky.zip
05 Jul 2018 08:24:19,306 INFO : Expanding hIgG_Speclib.blib
05 Jul 2018 08:24:19,307 INFO : Expanding IgG_EndoS_MaxQ.blib
05 Jul 2018 08:24:19,307 INFO : Expanding hIgG_dilution_series.skyd
05 Jul 2018 08:24:19,439 INFO : Expanding hIgG_dilution_series.sky.view
05 Jul 2018 08:24:19,439 INFO : Expanding hIgG_dilution_series.sky
05 Jul 2018 08:24:19,657 INFO : Inserting rt peptides
05 Jul 2018 08:24:21,179 INFO : Inserting IGHG1
05 Jul 2018 08:24:22,438 INFO : Inserting IGHG2
05 Jul 2018 08:24:23,633 INFO : Inserting IGHG3
05 Jul 2018 08:24:25,001 INFO : Inserting IGHG4
05 Jul 2018 08:24:26,849 INFO : Completed import of Skyline document from hIgG_dilution_series_2018-07-03_11-18-11.sky.zip
05 Jul 2018 08:24:26,857 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33737/hIgG_dilution_series_2018-07-03_11-18-11.sky.zip into the system
05 Jul 2018 08:24:26,857 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33738/GAS_Tonsillitis_2018-07-03_11-13-33.sky.zip into the system
05 Jul 2018 08:24:26,859 INFO : Starting import from GAS_Tonsillitis_2018-07-03_11-13-33.sky.zip
05 Jul 2018 08:24:26,864 INFO : Starting to import Skyline document from GAS_Tonsillitis_2018-07-03_11-13-33.sky.zip
05 Jul 2018 08:24:26,864 INFO : Expanding hIgG_Speclib.blib
05 Jul 2018 08:24:26,865 INFO : Expanding IgG_EndoS_MaxQ.blib
05 Jul 2018 08:24:26,865 INFO : Expanding GAS_Tonsillitis.skyd
05 Jul 2018 08:24:27,101 INFO : Expanding GAS_Tonsillitis.sky.view
05 Jul 2018 08:24:27,102 INFO : Expanding GAS_Tonsillitis.sky
05 Jul 2018 08:24:27,552 INFO : Inserting rt peptides
05 Jul 2018 08:24:30,048 INFO : Inserting IGHG1
05 Jul 2018 08:24:32,190 INFO : Inserting IGHG2
05 Jul 2018 08:24:34,230 INFO : Inserting IGHG3
05 Jul 2018 08:24:36,543 INFO : Inserting IGHG4
05 Jul 2018 08:24:38,822 INFO : Completed import of Skyline document from GAS_Tonsillitis_2018-07-03_11-13-33.sky.zip
05 Jul 2018 08:24:38,830 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33738/GAS_Tonsillitis_2018-07-03_11-13-33.sky.zip into the system
05 Jul 2018 08:24:38,830 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33739/GAS_Sepsis%20plasma_2018-07-03_11-03-20.sky.zip into the system
05 Jul 2018 08:24:38,832 INFO : Starting import from GAS_Sepsis plasma_2018-07-03_11-03-20.sky.zip
05 Jul 2018 08:24:38,837 INFO : Starting to import Skyline document from GAS_Sepsis plasma_2018-07-03_11-03-20.sky.zip
05 Jul 2018 08:24:38,838 INFO : Expanding hIgG_Speclib.blib
05 Jul 2018 08:24:38,838 INFO : Expanding IgG_EndoS_MaxQ.blib
05 Jul 2018 08:24:38,839 INFO : Expanding GAS_Sepsis plasma.skyd
05 Jul 2018 08:24:39,032 INFO : Expanding GAS_Sepsis plasma.sky.view
05 Jul 2018 08:24:39,032 INFO : Expanding GAS_Sepsis plasma.sky
05 Jul 2018 08:24:39,334 INFO : Inserting rt peptides
05 Jul 2018 08:24:41,382 INFO : Inserting IGHG1
05 Jul 2018 08:24:43,141 INFO : Inserting IGHG2
05 Jul 2018 08:24:44,893 INFO : Inserting IGHG3
05 Jul 2018 08:24:46,838 INFO : Inserting IGHG4
05 Jul 2018 08:24:48,889 INFO : Completed import of Skyline document from GAS_Sepsis plasma_2018-07-03_11-03-20.sky.zip
05 Jul 2018 08:24:48,897 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/human%20samples/xar/experiments_and_runs.xar.exploded/Run33739/GAS_Sepsis%20plasma_2018-07-03_11-03-20.sky.zip into the system
05 Jul 2018 08:24:49,004 INFO : Done importing xar
05 Jul 2018 08:24:49,313 INFO : Loading pages and webpart properties
05 Jul 2018 08:24:49,355 INFO : Done importing pages and webpart properties
05 Jul 2018 08:24:49,355 INFO : Done importing folder archive for human samples
05 Jul 2018 08:24:49,431 INFO : New container created with inherited permissions for mouse samples
05 Jul 2018 08:24:49,431 INFO : Loading folder archive for mouse samples
05 Jul 2018 08:24:49,435 INFO : Loading folder properties (folder type, settings and active modules)
05 Jul 2018 08:24:49,483 INFO : Done importing folder properties (folder type, settings and active modules)
05 Jul 2018 08:24:49,487 INFO : Loading container specific module properties
05 Jul 2018 08:24:49,495 INFO : Done importing container specific module properties
05 Jul 2018 08:24:49,499 INFO : Loading wikis
05 Jul 2018 08:24:49,499 INFO : 0 wikis imported
05 Jul 2018 08:24:49,499 INFO : Done importing wikis
05 Jul 2018 08:24:49,503 INFO : Loading xar
05 Jul 2018 08:24:49,794 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:49,799 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:49,805 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:49,805 DEBUG: Protocol import complete
05 Jul 2018 08:24:49,832 DEBUG: Protocol action set import complete
05 Jul 2018 08:24:49,839 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:49,842 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4226:' loaded for Data object.
05 Jul 2018 08:24:49,854 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4239:73278382-60d2-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:49,854 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:49,858 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:49,859 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4239:732783ae-60d2-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:49,864 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:49,866 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4226:' loaded for Data object.
05 Jul 2018 08:24:49,875 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4239:73277ff8-60d2-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:49,876 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:49,879 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:49,880 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4239:73278017-60d2-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:49,884 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip'
05 Jul 2018 08:24:49,886 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4226:' loaded for Data object.
05 Jul 2018 08:24:49,895 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4239:05b034f2-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:49,895 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip.Core'
05 Jul 2018 08:24:49,898 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4239:TargetedMS.ImportSkyZip.Output'
05 Jul 2018 08:24:49,899 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4239:05b03512-60c3-1036-ac03-3013bb9bf982'
05 Jul 2018 08:24:49,900 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/mouse%20samples/xar/experiments_and_runs.xar.exploded/Run33740/mouseAP1_48hpi_exp2_2018-07-03_11-44-36.sky.zip into the system
05 Jul 2018 08:24:49,903 INFO : Starting import from mouseAP1_48hpi_exp2_2018-07-03_11-44-36.sky.zip
05 Jul 2018 08:24:49,914 INFO : Starting to import Skyline document from mouseAP1_48hpi_exp2_2018-07-03_11-44-36.sky.zip
05 Jul 2018 08:24:49,914 INFO : Expanding mIgG1_rt.irtdb
05 Jul 2018 08:24:49,914 INFO : Expanding mouseAP1_48hpi_exp2.blib
05 Jul 2018 08:24:49,915 INFO : Expanding mAtlas-assay.blib
05 Jul 2018 08:24:49,915 INFO : Expanding mIgG1_speclib.blib
05 Jul 2018 08:24:49,915 INFO : Expanding mIgG1_speclib.redundant.blib
05 Jul 2018 08:24:49,916 INFO : Expanding mouseAP1_48hpi_exp2.skyd
05 Jul 2018 08:24:50,029 INFO : Expanding mouseAP1_48hpi_exp2.sky.view
05 Jul 2018 08:24:50,029 INFO : Expanding mouseAP1_48hpi_exp2.sky
05 Jul 2018 08:24:50,283 INFO : Inserting rt peptides
05 Jul 2018 08:24:51,716 INFO : Inserting mIgG1
05 Jul 2018 08:24:54,456 INFO : Completed import of Skyline document from mouseAP1_48hpi_exp2_2018-07-03_11-44-36.sky.zip
05 Jul 2018 08:24:54,463 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/mouse%20samples/xar/experiments_and_runs.xar.exploded/Run33740/mouseAP1_48hpi_exp2_2018-07-03_11-44-36.sky.zip into the system
05 Jul 2018 08:24:54,463 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/mouse%20samples/xar/experiments_and_runs.xar.exploded/Run33741/mouseAP1_48hpi_exp1_2018-07-03_11-36-10.sky.zip into the system
05 Jul 2018 08:24:54,466 INFO : Starting import from mouseAP1_48hpi_exp1_2018-07-03_11-36-10.sky.zip
05 Jul 2018 08:24:54,471 INFO : Starting to import Skyline document from mouseAP1_48hpi_exp1_2018-07-03_11-36-10.sky.zip
05 Jul 2018 08:24:54,471 INFO : Expanding mIgG1_rt.irtdb
05 Jul 2018 08:24:54,471 INFO : Expanding mouseAP1_48hpi_exp1.blib
05 Jul 2018 08:24:54,472 INFO : Expanding mAtlas-assay.blib
05 Jul 2018 08:24:54,472 INFO : Expanding mIgG1_speclib.blib
05 Jul 2018 08:24:54,472 INFO : Expanding mIgG1_speclib.redundant.blib
05 Jul 2018 08:24:54,473 INFO : Expanding mouseAP1_48hpi_exp1.skyd
05 Jul 2018 08:24:54,580 INFO : Expanding mouseAP1_48hpi_exp1.sky.view
05 Jul 2018 08:24:54,581 INFO : Expanding mouseAP1_48hpi_exp1.sky
05 Jul 2018 08:24:54,909 INFO : Inserting rt peptides
05 Jul 2018 08:24:56,336 INFO : Inserting mIgG1
05 Jul 2018 08:24:58,903 INFO : Completed import of Skyline document from mouseAP1_48hpi_exp1_2018-07-03_11-36-10.sky.zip
05 Jul 2018 08:24:58,909 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/mouse%20samples/xar/experiments_and_runs.xar.exploded/Run33741/mouseAP1_48hpi_exp1_2018-07-03_11-36-10.sky.zip into the system
05 Jul 2018 08:24:58,909 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/mouse%20samples/xar/experiments_and_runs.xar.exploded/Run33742/mIgG1_dilution_series_2018-07-03_11-24-14.sky.zip into the system
05 Jul 2018 08:24:58,910 INFO : Starting import from mIgG1_dilution_series_2018-07-03_11-24-14.sky.zip
05 Jul 2018 08:24:58,913 INFO : Starting to import Skyline document from mIgG1_dilution_series_2018-07-03_11-24-14.sky.zip
05 Jul 2018 08:24:58,913 INFO : Expanding mIgG1_rt.irtdb
05 Jul 2018 08:24:58,914 INFO : Expanding mIgG1_dilution_series.blib
05 Jul 2018 08:24:58,914 INFO : Expanding mIgG1_dilution_series.redundant.blib
05 Jul 2018 08:24:58,915 INFO : Expanding mIgG1_speclib.blib
05 Jul 2018 08:24:58,915 INFO : Expanding mIgG1_speclib.redundant.blib
05 Jul 2018 08:24:58,915 INFO : Expanding mIgG1_dilution_series.skyd
05 Jul 2018 08:24:59,016 INFO : Expanding mIgG1_dilution_series.sky.view
05 Jul 2018 08:24:59,016 INFO : Expanding mIgG1_dilution_series.sky
05 Jul 2018 08:24:59,236 INFO : Inserting rt peptides
05 Jul 2018 08:25:00,434 INFO : Inserting mIgG1
05 Jul 2018 08:25:02,894 INFO : Completed import of Skyline document from mIgG1_dilution_series_2018-07-03_11-24-14.sky.zip
05 Jul 2018 08:25:02,902 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Lund%20University%20IMP%20-%20EndoS/@files/export/subfolders/mouse%20samples/xar/experiments_and_runs.xar.exploded/Run33742/mIgG1_dilution_series_2018-07-03_11-24-14.sky.zip into the system
05 Jul 2018 08:25:02,941 INFO : Done importing xar
05 Jul 2018 08:25:03,108 INFO : Loading pages and webpart properties
05 Jul 2018 08:25:03,150 INFO : Done importing pages and webpart properties
05 Jul 2018 08:25:03,150 INFO : Done importing folder archive for mouse samples
05 Jul 2018 08:25:03,150 INFO : Done importing subfolders and container tabs
05 Jul 2018 08:25:03,150 INFO :
05 Jul 2018 08:25:03,150 INFO : Experiment import completed successfully.
05 Jul 2018 08:25:03,150 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
05 Jul 2018 08:25:03,161 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
05 Jul 2018 08:25:03,162 INFO :
05 Jul 2018 08:25:03,162 INFO : Finishing up experiment copy.
05 Jul 2018 08:25:03,169 INFO : Adding runs imported in subfolders.
05 Jul 2018 08:25:03,247 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
05 Jul 2018 08:25:03,299 INFO : Updating access URL to point to the new copy of the data.
05 Jul 2018 08:25:03,863 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'