11 Jun 2018 15:16:50,003 INFO : Copying experiment "Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production" from folder /JBEI/J. Alonso-Gutierrez et al. Metab. Eng. 2013 - Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production/Limonene Proteomic Data to /Panorama Public/2018/JBEI - Limonene Proteomic Data
11 Jun 2018 15:16:50,003 INFO : =======================================
11 Jun 2018 15:16:50,030 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
11 Jun 2018 15:16:50,033 INFO :
11 Jun 2018 15:16:50,033 INFO : Exporting experiment.
11 Jun 2018 15:16:50,431 INFO :
11 Jun 2018 15:16:50,431 INFO : Experiment export completed successfully.
11 Jun 2018 15:16:50,431 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
11 Jun 2018 15:16:50,450 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
11 Jun 2018 15:16:50,450 INFO :
11 Jun 2018 15:16:50,450 INFO : Importing experiment.
11 Jun 2018 15:16:50,457 INFO : Loading folder properties (folder type, settings and active modules)
11 Jun 2018 15:16:50,551 INFO : Done importing folder properties (folder type, settings and active modules)
11 Jun 2018 15:16:50,556 INFO : Loading container specific module properties
11 Jun 2018 15:16:50,566 INFO : Done importing container specific module properties
11 Jun 2018 15:16:50,572 INFO : Loading wikis
11 Jun 2018 15:16:50,576 INFO : 0 wikis imported
11 Jun 2018 15:16:50,576 INFO : Done importing wikis
11 Jun 2018 15:16:50,581 INFO : Loading xar
11 Jun 2018 15:16:50,605 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4156:TargetedMS.ImportSkyZip'
11 Jun 2018 15:16:50,612 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4156:TargetedMS.ImportSkyZip.Core'
11 Jun 2018 15:16:50,631 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4156:TargetedMS.ImportSkyZip.Output'
11 Jun 2018 15:16:50,631 DEBUG: Protocol import complete
11 Jun 2018 15:16:50,635 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4156:Metabolic+engineering+of+Escherichia+coli+for+limonene+and+perillyl+alcohol+production'
11 Jun 2018 15:16:50,635 DEBUG: Experiment/Run group import complete
11 Jun 2018 15:16:50,666 DEBUG: Protocol action set import complete
11 Jun 2018 15:16:50,710 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4156:TargetedMS.ImportSkyZip'
11 Jun 2018 15:16:50,743 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4156:59ad94db-876e-1031-b94d-3013bb9b789c'
11 Jun 2018 15:16:50,744 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4156:TargetedMS.ImportSkyZip.Core'
11 Jun 2018 15:16:50,750 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4156:TargetedMS.ImportSkyZip.Output'
11 Jun 2018 15:16:50,751 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4156:59ad94e8-876e-1031-b94d-3013bb9b789c'
11 Jun 2018 15:16:50,753 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/JBEI%20%20-%20Limonene%20Proteomic%20Data/@files/export/xar/experiments_and_runs.xar.exploded/Run488/Alonso-Gutierrez-Limonene-manuscript-Metab%20Eng%202013_2014-03-06_09-12-25.sky.zip into the system
11 Jun 2018 15:16:50,757 INFO : Starting import from Alonso-Gutierrez-Limonene-manuscript-Metab Eng 2013_2014-03-06_09-12-25.sky.zip
11 Jun 2018 15:16:50,772 INFO : Starting to import Skyline document from Alonso-Gutierrez-Limonene-manuscript-Metab Eng 2013_2014-03-06_09-12-25.sky.zip
11 Jun 2018 15:16:50,773 INFO : Expanding Alonso-Gutierrez-Limonene-manuscript-Metab Eng 2013.skyd
11 Jun 2018 15:16:50,777 INFO : Expanding Alonso-Gutierrez-Limonene-manuscript-Metab Eng 2013.sky.view
11 Jun 2018 15:16:50,778 INFO : Expanding Alonso-Gutierrez-Limonene-manuscript-Metab Eng 2013.sky
11 Jun 2018 15:16:50,863 INFO : Inserting ATOB_ECOLI
11 Jun 2018 15:16:50,958 INFO : Inserting SSA-HMGS
11 Jun 2018 15:16:51,018 INFO : Inserting SSA-HMGR
11 Jun 2018 15:16:51,123 INFO : Inserting MK_YEAST
11 Jun 2018 15:16:51,223 INFO : Inserting PMK_Yeast
11 Jun 2018 15:16:51,333 INFO : Inserting PMD_YEAST
11 Jun 2018 15:16:51,430 INFO : Inserting IDI_ECOLI
11 Jun 2018 15:16:51,531 INFO : Inserting ISPA_ECOLI
11 Jun 2018 15:16:51,639 INFO : Inserting GPPS
11 Jun 2018 15:16:51,761 INFO : Inserting LS
11 Jun 2018 15:16:51,891 INFO : Inserting sp|P03023|LACI_ECOLI
11 Jun 2018 15:16:51,995 INFO : Inserting sp|P02769|ALBU_BOVIN
11 Jun 2018 15:16:53,208 INFO : Completed import of Skyline document from Alonso-Gutierrez-Limonene-manuscript-Metab Eng 2013_2014-03-06_09-12-25.sky.zip
11 Jun 2018 15:16:53,214 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/JBEI%20%20-%20Limonene%20Proteomic%20Data/@files/export/xar/experiments_and_runs.xar.exploded/Run488/Alonso-Gutierrez-Limonene-manuscript-Metab%20Eng%202013_2014-03-06_09-12-25.sky.zip into the system
11 Jun 2018 15:16:53,226 INFO : Done importing xar
11 Jun 2018 15:16:53,231 INFO : Loading pages and webpart properties
11 Jun 2018 15:16:53,294 INFO : Done importing pages and webpart properties
11 Jun 2018 15:16:53,294 INFO :
11 Jun 2018 15:16:53,294 INFO : Experiment import completed successfully.
11 Jun 2018 15:16:53,294 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
11 Jun 2018 15:16:53,301 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
11 Jun 2018 15:16:53,301 INFO :
11 Jun 2018 15:16:53,301 INFO : Finishing up experiment copy.
11 Jun 2018 15:16:53,303 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
11 Jun 2018 15:16:53,353 INFO : Updating access URL to point to the new copy of the data.
11 Jun 2018 15:16:53,425 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'