06 Aug 2018 08:52:07,149 INFO : Copying experiment "Mechanical force induces rapid phosphorylation dependent signaling in Xenopus embryos" from folder /Princeton University - Cristea Lab/Xenopus_PRM to /Panorama Public/2018/Cristea Lab - Xenopus_PRM
06 Aug 2018 08:52:07,149 INFO : =======================================
06 Aug 2018 08:52:07,186 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
06 Aug 2018 08:52:07,189 INFO :
06 Aug 2018 08:52:07,189 INFO : Exporting experiment.
06 Aug 2018 08:52:22,329 INFO :
06 Aug 2018 08:52:22,329 INFO : Experiment export completed successfully.
06 Aug 2018 08:52:22,329 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
06 Aug 2018 08:52:22,347 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
06 Aug 2018 08:52:22,347 INFO :
06 Aug 2018 08:52:22,347 INFO : Importing experiment.
06 Aug 2018 08:52:22,353 INFO : Loading folder properties (folder type, settings and active modules)
06 Aug 2018 08:52:22,562 INFO : Done importing folder properties (folder type, settings and active modules)
06 Aug 2018 08:52:22,565 INFO : Loading container specific module properties
06 Aug 2018 08:52:22,570 INFO : Done importing container specific module properties
06 Aug 2018 08:52:22,573 INFO : Loading xar
06 Aug 2018 08:52:24,002 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip'
06 Aug 2018 08:52:24,006 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 08:52:24,010 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 08:52:24,010 DEBUG: Protocol import complete
06 Aug 2018 08:52:24,012 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4434:Mechanical+force+induces+rapid+phosphorylation+dependent+signaling+in+Xenopus+embryos'
06 Aug 2018 08:52:24,012 DEBUG: Experiment/Run group import complete
06 Aug 2018 08:52:24,025 DEBUG: Protocol action set import complete
06 Aug 2018 08:52:24,037 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip'
06 Aug 2018 08:52:24,087 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4434:1348c085-7962-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,088 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 08:52:24,091 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 08:52:24,092 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4434:1348c0cd-7962-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,100 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip'
06 Aug 2018 08:52:24,108 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4434:ca2e9afc-7966-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,108 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 08:52:24,110 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 08:52:24,111 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4434:ca2e9b20-7966-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,119 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip'
06 Aug 2018 08:52:24,127 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4434:ca2e9b98-7966-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,127 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 08:52:24,129 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 08:52:24,130 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4434:ca2e9bb6-7966-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,139 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip'
06 Aug 2018 08:52:24,147 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4434:1348c4dd-7962-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,148 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 08:52:24,150 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 08:52:24,151 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4434:1348c51a-7962-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,159 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip'
06 Aug 2018 08:52:24,167 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4434:ca2e9848-7966-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,167 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 08:52:24,170 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 08:52:24,170 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4434:ca2e9867-7966-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,179 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip'
06 Aug 2018 08:52:24,186 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4434:1348c76b-7962-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,186 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 08:52:24,188 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4434:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 08:52:24,189 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4434:1348c78a-7962-1036-9916-3013bb9b6ada'
06 Aug 2018 08:52:24,190 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36187/EMT_MET_proteins_timeseries02_2018-08-03_11-51-05.sky.zip into the system
06 Aug 2018 08:52:24,191 INFO : Starting import from EMT_MET_proteins_timeseries02_2018-08-03_11-51-05.sky.zip
06 Aug 2018 08:52:24,197 INFO : Starting to import Skyline document from EMT_MET_proteins_timeseries02_2018-08-03_11-51-05.sky.zip
06 Aug 2018 08:52:24,197 INFO : Expanding XL_whole.blib
06 Aug 2018 08:52:24,198 INFO : Expanding EMT_MET_proteins_timeseries02.skyd
06 Aug 2018 08:52:24,310 INFO : Expanding EMT_MET_proteins_timeseries02.sky.view
06 Aug 2018 08:52:24,310 INFO : Expanding EMT_MET_proteins_timeseries02.sky
06 Aug 2018 08:52:24,313 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1
06 Aug 2018 08:52:24,524 INFO : Inserting gnl|Xelaev18012399m|PAC4GC:7354704|
06 Aug 2018 08:52:24,619 INFO : Inserting gnl|Xelaev18019668m|PAC4GC:7344650|
06 Aug 2018 08:52:24,761 INFO : Inserting gnl|Xelaev18008125m|PAC4GC:7330646|
06 Aug 2018 08:52:25,074 INFO : Inserting gnl|Xelaev18010862m|PAC4GC:7335255|
06 Aug 2018 08:52:25,266 INFO : Inserting gnl|Xelaev18026124m|PAC4GC:7329112|
06 Aug 2018 08:52:25,511 INFO : Inserting gnl|Xelaev18028769m|PAC4GC:7322904|
06 Aug 2018 08:52:25,793 INFO : Inserting gnl|Xelaev18045870m|PAC4GC:7337952|
06 Aug 2018 08:52:27,304 INFO : Completed import of Skyline document from EMT_MET_proteins_timeseries02_2018-08-03_11-51-05.sky.zip
06 Aug 2018 08:52:27,310 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36187/EMT_MET_proteins_timeseries02_2018-08-03_11-51-05.sky.zip into the system
06 Aug 2018 08:52:27,310 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36191/Pak2_Map4_phosphorylation_timeseries_2018-08-03_12-32-51.sky.zip into the system
06 Aug 2018 08:52:27,312 INFO : Starting import from Pak2_Map4_phosphorylation_timeseries_2018-08-03_12-32-51.sky.zip
06 Aug 2018 08:52:27,315 INFO : Starting to import Skyline document from Pak2_Map4_phosphorylation_timeseries_2018-08-03_12-32-51.sky.zip
06 Aug 2018 08:52:27,315 INFO : Expanding XL_phospho.blib
06 Aug 2018 08:52:27,316 INFO : Expanding Pak2_Map4_phosphorylation_timeseries.skyd
06 Aug 2018 08:52:27,597 INFO : Expanding Pak2_Map4_phosphorylation_timeseries.sky.view
06 Aug 2018 08:52:27,597 INFO : Expanding Pak2_Map4_phosphorylation_timeseries.sky
06 Aug 2018 08:52:27,599 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1
06 Aug 2018 08:52:27,860 INFO : Inserting gnl|Xelaev18027934m|PAC4GC:7327054|
06 Aug 2018 08:52:28,230 INFO : Inserting gnl|Xelaev18030528m|PAC4GC:7325959|
06 Aug 2018 08:52:29,568 INFO : Completed import of Skyline document from Pak2_Map4_phosphorylation_timeseries_2018-08-03_12-32-51.sky.zip
06 Aug 2018 08:52:29,576 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36191/Pak2_Map4_phosphorylation_timeseries_2018-08-03_12-32-51.sky.zip into the system
06 Aug 2018 08:52:29,576 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36192/F11R_phosphorylation_timeseries_2018-08-03_12-36-04.sky.zip into the system
06 Aug 2018 08:52:29,578 INFO : Starting import from F11R_phosphorylation_timeseries_2018-08-03_12-36-04.sky.zip
06 Aug 2018 08:52:29,584 INFO : Starting to import Skyline document from F11R_phosphorylation_timeseries_2018-08-03_12-36-04.sky.zip
06 Aug 2018 08:52:29,585 INFO : Expanding XL_phospho.blib
06 Aug 2018 08:52:29,585 INFO : Expanding F11R_phosphorylation_timeseries.skyd
06 Aug 2018 08:52:29,661 INFO : Expanding F11R_phosphorylation_timeseries.sky.view
06 Aug 2018 08:52:29,661 INFO : Expanding F11R_phosphorylation_timeseries.sky
06 Aug 2018 08:52:29,663 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1
06 Aug 2018 08:52:29,904 INFO : Inserting gnl|Xelaev18040966m|PAC4GC:7346302|
06 Aug 2018 08:52:31,192 INFO : Completed import of Skyline document from F11R_phosphorylation_timeseries_2018-08-03_12-36-04.sky.zip
06 Aug 2018 08:52:31,200 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36192/F11R_phosphorylation_timeseries_2018-08-03_12-36-04.sky.zip into the system
06 Aug 2018 08:52:31,200 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36188/EMT_MET_proteins_timeseries01_2018-08-03_11-55-42.sky.zip into the system
06 Aug 2018 08:52:31,202 INFO : Starting import from EMT_MET_proteins_timeseries01_2018-08-03_11-55-42.sky.zip
06 Aug 2018 08:52:31,206 INFO : Starting to import Skyline document from EMT_MET_proteins_timeseries01_2018-08-03_11-55-42.sky.zip
06 Aug 2018 08:52:31,207 INFO : Expanding XL_whole.blib
06 Aug 2018 08:52:31,208 INFO : Expanding EMT_MET_proteins_timeseries01.skyd
06 Aug 2018 08:52:31,312 INFO : Expanding EMT_MET_proteins_timeseries01.sky.view
06 Aug 2018 08:52:31,313 INFO : Expanding EMT_MET_proteins_timeseries01.sky
06 Aug 2018 08:52:31,319 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1
06 Aug 2018 08:52:31,572 INFO : Inserting gnl|Xelaev18012399m|PAC4GC:7354704|
06 Aug 2018 08:52:31,650 INFO : Inserting gnl|Xelaev18007536m|PAC4GC:7332469|
06 Aug 2018 08:52:32,021 INFO : Inserting gnl|Xelaev18032037m|PAC4GC:7326237|
06 Aug 2018 08:52:32,484 INFO : Inserting gnl|Xelaev18014415m|PAC4GC:7351912|
06 Aug 2018 08:52:32,609 INFO : Inserting gnl|Xelaev18038548m|PAC4GC:7348310|
06 Aug 2018 08:52:33,091 INFO : Inserting gnl|Xelaev18012307m|PAC4GC:7354699|
06 Aug 2018 08:52:33,428 INFO : Inserting gnl|Xelaev18044847m|PAC4GC:7360322|
06 Aug 2018 08:52:33,798 INFO : Inserting gnl|Xelaev18012624m|PAC4GC:7355191|
06 Aug 2018 08:52:34,089 INFO : Inserting gnl|Xelaev18023181m|PAC4GC:7363820|
06 Aug 2018 08:52:34,465 INFO : Inserting gnl|Xelaev18013548m|PAC4GC:7353827|
06 Aug 2018 08:52:34,901 INFO : Inserting gnl|Xelaev18019201m|PAC4GC:7344277|
06 Aug 2018 08:52:35,483 INFO : Inserting gnl|Xelaev18003093m|PAC4GC:7368998|
06 Aug 2018 08:52:35,916 INFO : Inserting gnl|Xelaev18027713m|PAC4GC:7327038|
06 Aug 2018 08:52:36,153 INFO : Inserting gnl|Xelaev18019507m|PAC4GC:7343565|
06 Aug 2018 08:52:36,323 INFO : Inserting gnl|Xelaev18014052m|PAC4GC:7354124|
06 Aug 2018 08:52:37,774 INFO : Completed import of Skyline document from EMT_MET_proteins_timeseries01_2018-08-03_11-55-42.sky.zip
06 Aug 2018 08:52:37,780 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36188/EMT_MET_proteins_timeseries01_2018-08-03_11-55-42.sky.zip into the system
06 Aug 2018 08:52:37,780 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36190/Pak2_phosphorylation_FAKi_2018-08-03_12-26-43.sky.zip into the system
06 Aug 2018 08:52:37,782 INFO : Starting import from Pak2_phosphorylation_FAKi_2018-08-03_12-26-43.sky.zip
06 Aug 2018 08:52:37,787 INFO : Starting to import Skyline document from Pak2_phosphorylation_FAKi_2018-08-03_12-26-43.sky.zip
06 Aug 2018 08:52:37,787 INFO : Expanding XL_phospho.blib
06 Aug 2018 08:52:37,788 INFO : Expanding Pak2_phosphorylation_FAKi.skyd
06 Aug 2018 08:52:38,363 INFO : Expanding Pak2_phosphorylation_FAKi.sky.view
06 Aug 2018 08:52:38,363 INFO : Expanding Pak2_phosphorylation_FAKi.sky
06 Aug 2018 08:52:38,366 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1
06 Aug 2018 08:52:38,551 INFO : Inserting gnl|Xelaev18027934m|PAC4GC:7327054|
06 Aug 2018 08:52:39,634 INFO : Completed import of Skyline document from Pak2_phosphorylation_FAKi_2018-08-03_12-26-43.sky.zip
06 Aug 2018 08:52:39,642 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36190/Pak2_phosphorylation_FAKi_2018-08-03_12-26-43.sky.zip into the system
06 Aug 2018 08:52:39,643 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36189/Pkc_substrates_phosphorylation_FAKi_2018-08-03_11-58-31.sky.zip into the system
06 Aug 2018 08:52:39,645 INFO : Starting import from Pkc_substrates_phosphorylation_FAKi_2018-08-03_11-58-31.sky.zip
06 Aug 2018 08:52:39,649 INFO : Starting to import Skyline document from Pkc_substrates_phosphorylation_FAKi_2018-08-03_11-58-31.sky.zip
06 Aug 2018 08:52:39,649 INFO : Expanding XL_phospho.blib
06 Aug 2018 08:52:39,650 INFO : Expanding Pkc_substrates_phosphorylation_FAKi.skyd
06 Aug 2018 08:52:40,352 INFO : Expanding Pkc_substrates_phosphorylation_FAKi.sky.view
06 Aug 2018 08:52:40,352 INFO : Expanding Pkc_substrates_phosphorylation_FAKi.sky
06 Aug 2018 08:52:40,354 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1
06 Aug 2018 08:52:40,541 INFO : Inserting gnl|Xelaev18040966m|PAC4GC:7346302|
06 Aug 2018 08:52:40,642 INFO : Inserting gnl|Xelaev18040010m|PAC4GC:7346614|
06 Aug 2018 08:52:41,734 INFO : Completed import of Skyline document from Pkc_substrates_phosphorylation_FAKi_2018-08-03_11-58-31.sky.zip
06 Aug 2018 08:52:41,742 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Cristea%20Lab%20-%20Xenopus_PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run36189/Pkc_substrates_phosphorylation_FAKi_2018-08-03_11-58-31.sky.zip into the system
06 Aug 2018 08:52:41,927 INFO : Done importing xar
06 Aug 2018 08:52:41,934 INFO : Loading wikis
06 Aug 2018 08:52:41,939 INFO : 0 wikis imported
06 Aug 2018 08:52:41,939 INFO : Done importing wikis
06 Aug 2018 08:52:43,144 INFO : Loading pages and webpart properties
06 Aug 2018 08:52:43,194 INFO : Done importing pages and webpart properties
06 Aug 2018 08:52:43,195 INFO :
06 Aug 2018 08:52:43,195 INFO : Experiment import completed successfully.
06 Aug 2018 08:52:43,195 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
06 Aug 2018 08:52:43,206 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
06 Aug 2018 08:52:43,206 INFO :
06 Aug 2018 08:52:43,206 INFO : Finishing up experiment copy.
06 Aug 2018 08:52:43,208 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
06 Aug 2018 08:52:43,670 INFO : Updating access URL to point to the new copy of the data.
06 Aug 2018 08:52:44,353 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'