17 Apr 2017 11:32:02,352 INFO : Copying experiment "Proteomic assay development for reproductive maturation state determination in Geoduck: towards a non-invasive proteomic assay for improving aquaculture" from folder /UW - Nunn Lab/Geoduck Reproduction to /Panorama Public/2017/Nunn - Geoduck Reproduction
17 Apr 2017 11:32:02,352 INFO : =======================================
17 Apr 2017 11:32:02,427 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
17 Apr 2017 11:32:02,430 INFO : 
17 Apr 2017 11:32:02,430 INFO : Exporting experiment.
17 Apr 2017 11:32:13,843 INFO : 
17 Apr 2017 11:32:13,843 INFO : Experiment export completed successfully.
17 Apr 2017 11:32:13,843 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
17 Apr 2017 11:32:13,859 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
17 Apr 2017 11:32:13,859 INFO : 
17 Apr 2017 11:32:13,859 INFO : Importing experiment.
17 Apr 2017 11:32:13,859 WARN : Import of groups outside of project context not supported.
17 Apr 2017 11:32:13,864 INFO : Loading folder properties (folder type, settings and active modules)
17 Apr 2017 11:32:13,936 INFO : Done importing folder properties (folder type, settings and active modules)
17 Apr 2017 11:32:13,941 INFO : Loading container specific module properties
17 Apr 2017 11:32:13,948 INFO : Done importing container specific module properties
17 Apr 2017 11:32:13,952 INFO : Loading wikis
17 Apr 2017 11:32:14,015 INFO : 2 wikis imported
17 Apr 2017 11:32:14,015 INFO : Done importing wikis
17 Apr 2017 11:32:14,055 INFO : Loading xar
17 Apr 2017 11:32:15,822 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip'
17 Apr 2017 11:32:15,826 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip.Core'
17 Apr 2017 11:32:15,829 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip.Output'
17 Apr 2017 11:32:15,829 DEBUG: Protocol import complete
17 Apr 2017 11:32:15,851 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-2967:Proteomic+assay+development+for+reproductive+maturation+state+determination+in+Geoduck%3A+towards+a+non-invasive+proteomic+assay+for+improving+aquaculture'
17 Apr 2017 11:32:15,851 DEBUG: Experiment/Run group import complete
17 Apr 2017 11:32:15,865 DEBUG: Protocol action set import complete
17 Apr 2017 11:32:15,879 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip'
17 Apr 2017 11:32:15,974 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2967:f243d395-05b9-1035-a6aa-3013bb9bf6e7'
17 Apr 2017 11:32:15,974 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip.Core'
17 Apr 2017 11:32:15,977 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip.Output'
17 Apr 2017 11:32:15,977 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2967:f243d4c6-05b9-1035-a6aa-3013bb9bf6e7'
17 Apr 2017 11:32:15,984 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip'
17 Apr 2017 11:32:16,004 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2967:f243d18f-05b9-1035-a6aa-3013bb9bf6e7'
17 Apr 2017 11:32:16,004 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip.Core'
17 Apr 2017 11:32:16,006 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2967:TargetedMS.ImportSkyZip.Output'
17 Apr 2017 11:32:16,007 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2967:f243d352-05b9-1035-a6aa-3013bb9bf6e7'
17 Apr 2017 11:32:16,008 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Nunn%20-%20Geoduck%20Reproduction/@files/export/xar/experiments_and_runs.xar.exploded/Run15615/2016%20September%2029%20hemolymph%20rev_2017-04-17_10-11-42.sky.zip into the system
17 Apr 2017 11:32:16,011 INFO : Starting import from 2016 September 29 hemolymph rev_2017-04-17_10-11-42.sky.zip
17 Apr 2017 11:32:16,018 INFO : Starting to import Skyline document from 2016 September 29 hemolymph rev_2017-04-17_10-11-42.sky.zip
17 Apr 2017 11:32:16,018 INFO : Expanding geoduck_LM.blib
17 Apr 2017 11:32:16,018 INFO : Expanding geoduck_EM.blib
17 Apr 2017 11:32:16,018 INFO : Expanding geoduck_LF.blib
17 Apr 2017 11:32:16,019 INFO : Expanding new_hemo_SRM.blib.blib
17 Apr 2017 11:32:16,019 INFO : Expanding 2016 September 29 hemolymph rev.skyd
17 Apr 2017 11:32:16,745 INFO : Expanding 2016 September 29 hemolymph rev.sky.view
17 Apr 2017 11:32:16,746 INFO : Expanding 2016 September 29 hemolymph rev.sky
17 Apr 2017 11:32:16,757 WARN : The version of this Skyline document is 3.61. This is newer than the highest supported version 3.6
17 Apr 2017 11:32:16,807 INFO : Inserting PRTC peptides
17 Apr 2017 11:32:18,823 INFO : Inserting EF cds.comp133422_c0_seq1|m.21474
17 Apr 2017 11:32:19,067 INFO : Inserting EF cds.comp134572_c0_seq1|m.22979
17 Apr 2017 11:32:19,616 INFO : Inserting EF cds.comp141647_c0_seq1|m.39026
17 Apr 2017 11:32:20,474 INFO : Inserting LF cds.comp130260_c0_seq1|m.17926
17 Apr 2017 11:32:20,824 INFO : Inserting LF cds.comp132950_c0_seq2|m.20866
17 Apr 2017 11:32:20,922 INFO : Inserting LF cds.comp138018_c0_seq1|m.29238
17 Apr 2017 11:32:21,020 INFO : Inserting LF cds.comp141647_c0_seq1|m.39026
17 Apr 2017 11:32:21,441 INFO : Inserting LF cds.comp144180_c0_seq1|m.50207
17 Apr 2017 11:32:22,033 INFO : Inserting LF cds.comp144501_c0_seq2|m.52220
17 Apr 2017 11:32:22,557 INFO : Inserting LM cds.comp131654_c1_seq1|m.19394
17 Apr 2017 11:32:22,846 INFO : Inserting LM cds.comp131715_c0_seq1|m.19472
17 Apr 2017 11:32:23,135 INFO : Inserting LM cds.comp133063_c0_seq1|m.21029
17 Apr 2017 11:32:23,427 INFO : Inserting LM cds.comp133232_c0_seq1|m.21239
17 Apr 2017 11:32:24,052 INFO : Inserting LM cds.comp139151_c0_seq5|m.31757
17 Apr 2017 11:32:24,605 INFO : Inserting LM cds.comp139654_c0_seq1|m.32810
17 Apr 2017 11:32:24,875 INFO : Inserting LM cds.comp141647_c0_seq1|m.39026
17 Apr 2017 11:32:25,769 INFO : Inserting LM cds.comp144210_c0_seq2|m.50335
17 Apr 2017 11:32:26,271 INFO : Inserting EM cds.comp116654_c0_seq1|m.9966
17 Apr 2017 11:32:26,515 INFO : Inserting EM cds.comp129542_c0_seq3|m.17326
17 Apr 2017 11:32:26,522 INFO : Inserting EM cds.comp133422_c0_seq1|m.21474
17 Apr 2017 11:32:26,753 INFO : Inserting EM cds.comp141647_c0_seq1|m.39026
17 Apr 2017 11:32:27,535 INFO : Inserting H cds.comp100108_c2_seq1|m.5995
17 Apr 2017 11:32:27,730 INFO : Inserting H cds.comp140343_c0_seq1|m.34695
17 Apr 2017 11:32:27,974 INFO : Inserting H cds.comp140645_c0_seq2|m.35607
17 Apr 2017 11:32:28,668 INFO : Inserting H cds.comp141785_c0_seq1|m.39776
17 Apr 2017 11:32:29,228 INFO : Inserting H cds.comp144315_c0_seq1|m.50928
17 Apr 2017 11:32:33,204 INFO : Completed import of Skyline document from 2016 September 29 hemolymph rev_2017-04-17_10-11-42.sky.zip
17 Apr 2017 11:32:33,210 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Nunn%20-%20Geoduck%20Reproduction/@files/export/xar/experiments_and_runs.xar.exploded/Run15615/2016%20September%2029%20hemolymph%20rev_2017-04-17_10-11-42.sky.zip into the system
17 Apr 2017 11:32:33,210 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Nunn%20-%20Geoduck%20Reproduction/@files/export/xar/experiments_and_runs.xar.exploded/Run15614/2016%20June%2015%20geoduck%20SRM%20rev_2017-04-17_10-10-38.sky.zip into the system
17 Apr 2017 11:32:33,212 INFO : Starting import from 2016 June 15 geoduck SRM rev_2017-04-17_10-10-38.sky.zip
17 Apr 2017 11:32:33,215 INFO : Starting to import Skyline document from 2016 June 15 geoduck SRM rev_2017-04-17_10-10-38.sky.zip
17 Apr 2017 11:32:33,216 INFO : Expanding geoduck_LM.blib
17 Apr 2017 11:32:33,216 INFO : Expanding geoduck_EM.blib
17 Apr 2017 11:32:33,216 INFO : Expanding geoduck_LF.blib
17 Apr 2017 11:32:33,216 INFO : Expanding 2016 June 15 geoduck SRM rev.skyd
17 Apr 2017 11:32:33,837 INFO : Expanding 2016 June 15 geoduck SRM rev.sky.view
17 Apr 2017 11:32:33,838 INFO : Expanding 2016 June 15 geoduck SRM rev.sky
17 Apr 2017 11:32:33,863 WARN : The version of this Skyline document is 3.61. This is newer than the highest supported version 3.6
17 Apr 2017 11:32:33,963 INFO : Inserting PRTC peptides
17 Apr 2017 11:32:38,576 INFO : Inserting peptides1
17 Apr 2017 11:32:38,955 INFO : Inserting Serum_Albumin:
17 Apr 2017 11:32:39,849 INFO : Inserting EF cds.comp133422_c0_seq1|m.21474
17 Apr 2017 11:32:40,201 INFO : Inserting EF cds.comp134572_c0_seq1|m.22979
17 Apr 2017 11:32:40,994 INFO : Inserting EF cds.comp141647_c0_seq1|m.39026
17 Apr 2017 11:32:42,264 INFO : Inserting LF cds.comp130260_c0_seq1|m.17926
17 Apr 2017 11:32:43,022 INFO : Inserting LF cds.comp132950_c0_seq2|m.20866
17 Apr 2017 11:32:43,804 INFO : Inserting LF cds.comp138018_c0_seq1|m.29238
17 Apr 2017 11:32:44,569 INFO : Inserting LF cds.comp141647_c0_seq1|m.39026
17 Apr 2017 11:32:46,676 INFO : Inserting LF cds.comp144180_c0_seq1|m.50207
17 Apr 2017 11:32:47,533 INFO : Inserting LF cds.comp144501_c0_seq2|m.52220
17 Apr 2017 11:32:48,753 INFO : Inserting LM cds.comp131654_c1_seq1|m.19394
17 Apr 2017 11:32:49,515 INFO : Inserting LM cds.comp131715_c0_seq1|m.19472
17 Apr 2017 11:32:50,706 INFO : Inserting LM cds.comp133063_c0_seq1|m.21029
17 Apr 2017 11:32:51,557 INFO : Inserting LM cds.comp133232_c0_seq1|m.21239
17 Apr 2017 11:32:52,608 INFO : Inserting LM cds.comp135264_c2_seq1|m.24100
17 Apr 2017 11:32:53,900 INFO : Inserting LM cds.comp139151_c0_seq5|m.31757
17 Apr 2017 11:32:55,175 INFO : Inserting LM cds.comp139654_c0_seq1|m.32810
17 Apr 2017 11:32:56,434 INFO : Inserting LM cds.comp140515_c2_seq1|m.35054
17 Apr 2017 11:32:57,197 INFO : Inserting LM cds.comp140866_c0_seq1|m.36276
17 Apr 2017 11:32:58,441 INFO : Inserting LM cds.comp141647_c0_seq1|m.39026
17 Apr 2017 11:33:00,202 INFO : Inserting LM cds.comp144210_c0_seq2|m.50335
17 Apr 2017 11:33:01,583 INFO : Inserting LM cds.comp144553_c0_seq2|m.52888
17 Apr 2017 11:33:02,435 INFO : Inserting LM cds.comp144596_c0_seq1|m.53297
17 Apr 2017 11:33:03,790 INFO : Inserting EM cds.comp116654_c0_seq1|m.9966
17 Apr 2017 11:33:04,171 INFO : Inserting EM cds.comp129542_c0_seq3|m.17326
17 Apr 2017 11:33:04,572 INFO : Inserting EM cds.comp133422_c0_seq1|m.21474
17 Apr 2017 11:33:04,960 INFO : Inserting EM cds.comp141647_c0_seq1|m.39026
17 Apr 2017 11:33:10,219 INFO : Completed import of Skyline document from 2016 June 15 geoduck SRM rev_2017-04-17_10-10-38.sky.zip
17 Apr 2017 11:33:10,229 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Nunn%20-%20Geoduck%20Reproduction/@files/export/xar/experiments_and_runs.xar.exploded/Run15614/2016%20June%2015%20geoduck%20SRM%20rev_2017-04-17_10-10-38.sky.zip into the system
17 Apr 2017 11:33:10,229 INFO : Done importing xar
17 Apr 2017 11:33:10,236 INFO : Loading pages and webpart properties
17 Apr 2017 11:33:10,293 INFO : Done importing pages and webpart properties
17 Apr 2017 11:33:10,293 INFO : 
17 Apr 2017 11:33:10,294 INFO : Experiment import completed successfully.
17 Apr 2017 11:33:10,294 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
17 Apr 2017 11:33:10,309 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
17 Apr 2017 11:33:10,310 INFO : 
17 Apr 2017 11:33:10,310 INFO : Finishing up experiment copy.
17 Apr 2017 11:33:10,312 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
17 Apr 2017 11:33:10,366 INFO : Updating access URL to point to the new copy of the data.
17 Apr 2017 11:33:10,492 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'