05 Jul 2017 20:34:57,869 INFO : Copying experiment "A mass spectrometry-based proteomic analysis of Homer2-interacting proteins in the mouse brain" from folder /MacCoss/Scott/Homer2 Interactome to /Panorama Public/2017/MacCoss - Homer2 Interactome
05 Jul 2017 20:34:57,869 INFO : =======================================
05 Jul 2017 20:34:57,903 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
05 Jul 2017 20:34:57,905 INFO : 
05 Jul 2017 20:34:57,906 INFO : Exporting experiment.
05 Jul 2017 20:35:06,691 INFO : 
05 Jul 2017 20:35:06,691 INFO : Experiment export completed successfully.
05 Jul 2017 20:35:06,691 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
05 Jul 2017 20:35:06,722 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
05 Jul 2017 20:35:06,722 INFO : 
05 Jul 2017 20:35:06,722 INFO : Importing experiment.
05 Jul 2017 20:35:06,723 WARN : Import of groups outside of project context not supported.
05 Jul 2017 20:35:06,731 INFO : Loading folder properties (folder type, settings and active modules)
05 Jul 2017 20:35:06,821 INFO : Done importing folder properties (folder type, settings and active modules)
05 Jul 2017 20:35:06,827 INFO : Loading container specific module properties
05 Jul 2017 20:35:06,838 INFO : Done importing container specific module properties
05 Jul 2017 20:35:06,846 INFO : Loading wikis
05 Jul 2017 20:35:06,849 INFO : 0 wikis imported
05 Jul 2017 20:35:06,849 INFO : Done importing wikis
05 Jul 2017 20:35:06,854 INFO : Loading xar
05 Jul 2017 20:35:08,218 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip'
05 Jul 2017 20:35:08,224 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip.Core'
05 Jul 2017 20:35:08,229 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip.Output'
05 Jul 2017 20:35:08,229 DEBUG: Protocol import complete
05 Jul 2017 20:35:08,264 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3149:A+Proteomics+Analysis+of+Putative+Homer-2a%2Fb+Interacting+Proteins+in+the+Mouse+Brain'
05 Jul 2017 20:35:08,264 DEBUG: Experiment/Run group import complete
05 Jul 2017 20:35:08,293 DEBUG: Protocol action set import complete
05 Jul 2017 20:35:08,315 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip'
05 Jul 2017 20:35:08,387 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3149:4f5f6919-1574-1035-a8e5-3013bb9b4292'
05 Jul 2017 20:35:08,387 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip.Core'
05 Jul 2017 20:35:08,392 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip.Output'
05 Jul 2017 20:35:08,393 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3149:4f5f69a4-1574-1035-a8e5-3013bb9b4292'
05 Jul 2017 20:35:08,403 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip'
05 Jul 2017 20:35:08,415 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3149:4f5f6cda-1574-1035-a8e5-3013bb9b4292'
05 Jul 2017 20:35:08,415 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip.Core'
05 Jul 2017 20:35:08,418 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip.Output'
05 Jul 2017 20:35:08,419 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3149:4f5f6d1f-1574-1035-a8e5-3013bb9b4292'
05 Jul 2017 20:35:08,430 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip'
05 Jul 2017 20:35:08,441 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3149:9cdee5aa-433b-1035-a543-3013bb9b3006'
05 Jul 2017 20:35:08,441 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip.Core'
05 Jul 2017 20:35:08,444 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3149:TargetedMS.ImportSkyZip.Output'
05 Jul 2017 20:35:08,445 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3149:f0545871-4348-1035-a543-3013bb9b3006'
05 Jul 2017 20:35:08,446 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/MacCoss%20-%20Homer2%20Interactome/@files/export/xar/experiments_and_runs.xar.exploded/Run16384/Supplemental-Data-1_2017-05-07_12-28-39.sky.zip into the system
05 Jul 2017 20:35:08,450 INFO : Starting import from Supplemental-Data-1_2017-05-07_12-28-39.sky.zip
05 Jul 2017 20:35:08,463 INFO : Starting to import Skyline document from Supplemental-Data-1_2017-05-07_12-28-39.sky.zip
05 Jul 2017 20:35:08,463 INFO : Expanding SP-TR-S1-E-099.blib
05 Jul 2017 20:35:08,468 INFO : Expanding Supplemental-Data-1.skyd
05 Jul 2017 20:35:08,574 INFO : Expanding Supplemental-Data-1.sky.view
05 Jul 2017 20:35:08,574 INFO : Expanding Supplemental-Data-1.sky
05 Jul 2017 20:35:08,593 WARN : The version of this Skyline document is 3.62. This is newer than the highest supported version 3.6
05 Jul 2017 20:35:08,790 INFO : Inserting tr|E9Q828|E9Q828_MOUSE
05 Jul 2017 20:35:10,428 INFO : Inserting sp|P01870|IGHG_RABIT
05 Jul 2017 20:35:11,532 INFO : Inserting tr|G5E829|G5E829_MOUSE
05 Jul 2017 20:35:13,834 INFO : Inserting sp|P11881|ITPR1_MOUSE
05 Jul 2017 20:35:16,056 INFO : Inserting sp|P12023|A4_MOUSE
05 Jul 2017 20:35:17,111 INFO : Inserting sp|P60766|CDC42_MOUSE
05 Jul 2017 20:35:18,138 INFO : Inserting sp|Q3UHD9|AGAP2_MOUSE
05 Jul 2017 20:35:18,680 INFO : Inserting sp|Q8BZ98|DYN3_MOUSE
05 Jul 2017 20:35:21,255 INFO : Inserting sp|Q922Y1|UBXN1_MOUSE
05 Jul 2017 20:35:21,773 INFO : Inserting sp|Q9QUI0|RHOA_MOUSE
05 Jul 2017 20:35:22,297 INFO : Inserting sp|Q9QXS6|DREB_MOUSE
05 Jul 2017 20:35:22,831 INFO : Inserting sp|Q9Z1B3|PLCB1_MOUSE
05 Jul 2017 20:35:25,741 INFO : Completed import of Skyline document from Supplemental-Data-1_2017-05-07_12-28-39.sky.zip
05 Jul 2017 20:35:25,753 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/MacCoss%20-%20Homer2%20Interactome/@files/export/xar/experiments_and_runs.xar.exploded/Run16384/Supplemental-Data-1_2017-05-07_12-28-39.sky.zip into the system
05 Jul 2017 20:35:25,753 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/MacCoss%20-%20Homer2%20Interactome/@files/export/xar/experiments_and_runs.xar.exploded/Run16386/Supplemental-Data-3_2017-05-07_12-35-40.sky.zip into the system
05 Jul 2017 20:35:25,759 INFO : Starting import from Supplemental-Data-3_2017-05-07_12-35-40.sky.zip
05 Jul 2017 20:35:25,767 INFO : Starting to import Skyline document from Supplemental-Data-3_2017-05-07_12-35-40.sky.zip
05 Jul 2017 20:35:25,767 INFO : Expanding -5-for-iRT-Enriched.irtdb
05 Jul 2017 20:35:25,768 INFO : Expanding 140131_Homer2_IP_M_W_MSconvert_E_Only_Hermie_099.blib
05 Jul 2017 20:35:25,779 INFO : Expanding Supplemental-Data-3.skyd
05 Jul 2017 20:35:25,914 INFO : Expanding Supplemental-Data-3.sky.view
05 Jul 2017 20:35:25,914 INFO : Expanding Supplemental-Data-3.sky
05 Jul 2017 20:35:25,927 WARN : The version of this Skyline document is 3.62. This is newer than the highest supported version 3.6
05 Jul 2017 20:35:26,194 INFO : Inserting sp|D3YZU1|SHAN1_MOUSE
05 Jul 2017 20:35:26,399 INFO : Inserting sp|F6SEU4|SYGP1_MOUSE
05 Jul 2017 20:35:26,638 INFO : Inserting sp|P11798|KCC2A_MOUSE
05 Jul 2017 20:35:27,084 INFO : Inserting sp|P28652|KCC2B_MOUSE
05 Jul 2017 20:35:27,397 INFO : Inserting sp|P35438|NMDZ1_MOUSE
05 Jul 2017 20:35:27,557 INFO : Inserting sp|Q01097|NMDE2_MOUSE
05 Jul 2017 20:35:27,646 INFO : Inserting sp|Q4ACU6|SHAN3_MOUSE
05 Jul 2017 20:35:27,842 INFO : Inserting sp|Q62108|DLG4_MOUSE
05 Jul 2017 20:35:28,049 INFO : Inserting sp|Q80TE7|LRRC7_MOUSE
05 Jul 2017 20:35:28,177 INFO : Inserting sp|Q80Z38|SHAN2_MOUSE
05 Jul 2017 20:35:28,361 INFO : Inserting sp|Q8BIZ1|ANS1B_MOUSE
05 Jul 2017 20:35:28,464 INFO : Inserting sp|Q8BJH1|ZC21A_MOUSE
05 Jul 2017 20:35:28,709 INFO : Inserting sp|Q8BKX1|BAIP2_MOUSE
05 Jul 2017 20:35:28,868 INFO : Inserting sp|Q8BW86|ARG33_MOUSE
05 Jul 2017 20:35:29,057 INFO : Inserting sp|Q8K411|PREP_MOUSE
05 Jul 2017 20:35:29,680 INFO : Inserting sp|Q99JP6|HOME3_MOUSE
05 Jul 2017 20:35:30,135 INFO : Inserting sp|Q9QWI6|SRCN1_MOUSE
05 Jul 2017 20:35:30,298 INFO : Inserting sp|Q9QWW1|HOME2_MOUSE
05 Jul 2017 20:35:30,528 INFO : Inserting sp|Q9Z2Y3|HOME1_MOUSE
05 Jul 2017 20:35:31,179 INFO : Inserting sp|P01870|IGHG_RABIT
05 Jul 2017 20:35:31,477 INFO : Inserting iRT Standards P02647
05 Jul 2017 20:35:35,052 INFO : Completed import of Skyline document from Supplemental-Data-3_2017-05-07_12-35-40.sky.zip
05 Jul 2017 20:35:35,057 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/MacCoss%20-%20Homer2%20Interactome/@files/export/xar/experiments_and_runs.xar.exploded/Run16386/Supplemental-Data-3_2017-05-07_12-35-40.sky.zip into the system
05 Jul 2017 20:35:35,057 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/MacCoss%20-%20Homer2%20Interactome/@files/export/xar/experiments_and_runs.xar.exploded/Run18187/Supplemental-Data-2_2017-07-04_17-42-49.sky.zip into the system
05 Jul 2017 20:35:35,060 INFO : Starting import from Supplemental-Data-2_2017-07-04_17-42-49.sky.zip
05 Jul 2017 20:35:35,062 INFO : Starting to import Skyline document from Supplemental-Data-2_2017-07-04_17-42-49.sky.zip
05 Jul 2017 20:35:35,063 INFO : Expanding 140131_Homer2_IP_M_W_MSconvert_E_Only_Hermie_099.blib
05 Jul 2017 20:35:35,088 INFO : Expanding 140131_Homer2_IP_M_W_MSconvert_E_Only_Hermie_099.redundant.blib
05 Jul 2017 20:35:35,544 INFO : Expanding Supplemental-Data-2.skyd
05 Jul 2017 20:35:36,260 INFO : Expanding Supplemental-Data-2.sky.view
05 Jul 2017 20:35:36,261 INFO : Expanding Supplemental-Data-2.sky
05 Jul 2017 20:35:36,435 INFO : Inserting sp|D3YZU1|SHAN1_MOUSE
05 Jul 2017 20:35:37,195 INFO : Inserting sp|E9Q414|APOB_MOUSE
05 Jul 2017 20:35:37,465 INFO : Inserting sp|F6SEU4|SYGP1_MOUSE
05 Jul 2017 20:35:38,404 INFO : Inserting sp|O35098|DPYL4_MOUSE
05 Jul 2017 20:35:38,825 INFO : Inserting sp|O35295|PURB_MOUSE
05 Jul 2017 20:35:39,388 INFO : Inserting sp|O88737|BSN_MOUSE
05 Jul 2017 20:35:40,493 INFO : Inserting sp|P01029|CO4B_MOUSE
05 Jul 2017 20:35:40,790 INFO : Inserting sp|P01942|HBA_MOUSE
05 Jul 2017 20:35:41,170 INFO : Inserting sp|P04370|MBP_MOUSE
05 Jul 2017 20:35:42,075 INFO : Inserting sp|P11798|KCC2A_MOUSE
05 Jul 2017 20:35:43,304 INFO : Inserting sp|P12849|KAP1_MOUSE
05 Jul 2017 20:35:43,931 INFO : Inserting sp|P14106|C1QB_MOUSE
05 Jul 2017 20:35:44,391 INFO : Inserting sp|P16330|CN37_MOUSE
05 Jul 2017 20:35:45,359 INFO : Inserting sp|P17426|AP2A1_MOUSE
05 Jul 2017 20:35:45,651 INFO : Inserting sp|P18872|GNAO_MOUSE
05 Jul 2017 20:35:46,086 INFO : Inserting sp|P23242|CXA1_MOUSE
05 Jul 2017 20:35:46,500 INFO : Inserting sp|P28652|KCC2B_MOUSE
05 Jul 2017 20:35:47,184 INFO : Inserting sp|P28740|KIF2A_MOUSE
05 Jul 2017 20:35:47,935 INFO : Inserting sp|P35438|NMDZ1_MOUSE
05 Jul 2017 20:35:48,254 INFO : Inserting sp|P35922|FMR1_MOUSE
05 Jul 2017 20:35:48,697 INFO : Inserting sp|P42669|PURA_MOUSE
05 Jul 2017 20:35:49,379 INFO : Inserting sp|P46096|SYT1_MOUSE
05 Jul 2017 20:35:49,934 INFO : Inserting sp|P49817|CAV1_MOUSE
05 Jul 2017 20:35:50,366 INFO : Inserting sp|P56873|SSA27_MOUSE
05 Jul 2017 20:35:50,651 INFO : Inserting sp|P60202|MYPR_MOUSE
05 Jul 2017 20:35:51,072 INFO : Inserting sp|P62743|AP2S1_MOUSE
05 Jul 2017 20:35:51,364 INFO : Inserting sp|P70175|DLG3_MOUSE
05 Jul 2017 20:35:51,649 INFO : Inserting sp|P84091|AP2M1_MOUSE
05 Jul 2017 20:35:52,186 INFO : Inserting sp|Q01097|NMDE2_MOUSE
05 Jul 2017 20:35:52,598 INFO : Inserting sp|Q02105|C1QC_MOUSE
05 Jul 2017 20:35:53,142 INFO : Inserting sp|Q3UVX5|GRM5_MOUSE
05 Jul 2017 20:35:54,347 INFO : Inserting sp|Q4ACU6|SHAN3_MOUSE
05 Jul 2017 20:35:54,631 INFO : Inserting sp|Q60875|ARHG2_MOUSE
05 Jul 2017 20:35:55,034 INFO : Inserting sp|Q62108|DLG4_MOUSE
05 Jul 2017 20:35:55,961 INFO : Inserting sp|Q6A065|CE170_MOUSE
05 Jul 2017 20:35:57,837 INFO : Inserting sp|Q6A0A9|F120A_MOUSE
05 Jul 2017 20:35:58,718 INFO : Inserting sp|Q6NSW3|SPKAP_MOUSE
05 Jul 2017 20:36:01,896 INFO : Inserting sp|Q6PHZ2|KCC2D_MOUSE
05 Jul 2017 20:36:02,190 INFO : Inserting sp|Q7TSJ2|MAP6_MOUSE
05 Jul 2017 20:36:05,254 INFO : Inserting sp|Q80TE7|LRRC7_MOUSE
05 Jul 2017 20:36:05,538 INFO : Inserting sp|Q80U23|SNPH_MOUSE
05 Jul 2017 20:36:05,836 INFO : Inserting sp|Q80WQ2|VAC14_MOUSE
05 Jul 2017 20:36:06,773 INFO : Inserting sp|Q80YN3|BCAS1_MOUSE
05 Jul 2017 20:36:07,051 INFO : Inserting sp|Q80Z38|SHAN2_MOUSE
05 Jul 2017 20:36:08,113 INFO : Inserting sp|Q8BH59|CMC1_MOUSE
05 Jul 2017 20:36:08,527 INFO : Inserting sp|Q8BIZ1|ANS1B_MOUSE
05 Jul 2017 20:36:08,821 INFO : Inserting sp|Q8BJH1|ZC21A_MOUSE
05 Jul 2017 20:36:09,689 INFO : Inserting sp|Q8BKX1|BAIP2_MOUSE
05 Jul 2017 20:36:10,562 INFO : Inserting sp|Q8BW86|ARG33_MOUSE
05 Jul 2017 20:36:11,313 INFO : Inserting sp|Q8BX17|GEMI5_MOUSE
05 Jul 2017 20:36:11,846 INFO : Inserting sp|Q8K411|PREP_MOUSE
05 Jul 2017 20:36:13,890 INFO : Inserting sp|Q8R4E6|PURG_MOUSE
05 Jul 2017 20:36:14,160 INFO : Inserting sp|Q91XM9|DLG2_MOUSE
05 Jul 2017 20:36:14,694 INFO : Inserting sp|Q923T9|KCC2G_MOUSE
05 Jul 2017 20:36:14,963 INFO : Inserting sp|Q99JP6|HOME3_MOUSE
05 Jul 2017 20:36:15,951 INFO : Inserting sp|Q99LB2|DHRS4_MOUSE
05 Jul 2017 20:36:16,064 INFO : Inserting sp|Q9CQQ7|AT5F1_MOUSE
05 Jul 2017 20:36:16,249 INFO : Inserting sp|Q9D3D9|ATPD_MOUSE
05 Jul 2017 20:36:16,618 INFO : Inserting sp|Q9D8B3|CHM4B_MOUSE
05 Jul 2017 20:36:16,786 INFO : Inserting sp|Q9DB72|BTBDH_MOUSE
05 Jul 2017 20:36:17,060 INFO : Inserting sp|Q9DBC7|KAP0_MOUSE
05 Jul 2017 20:36:17,595 INFO : Inserting sp|Q9DCR2|AP3S1_MOUSE
05 Jul 2017 20:36:17,967 INFO : Inserting sp|Q9DCX2|ATP5H_MOUSE
05 Jul 2017 20:36:18,276 INFO : Inserting sp|Q9EPU0|RENT1_MOUSE
05 Jul 2017 20:36:18,566 INFO : Inserting sp|Q9EQF6|DPYL5_MOUSE
05 Jul 2017 20:36:19,224 INFO : Inserting sp|Q9QWI6|SRCN1_MOUSE
05 Jul 2017 20:36:20,133 INFO : Inserting sp|Q9QWW1|HOME2_MOUSE
05 Jul 2017 20:36:20,682 INFO : Inserting sp|Q9QYR6|MAP1A_MOUSE
05 Jul 2017 20:36:25,565 INFO : Inserting sp|Q9QYX7|PCLO_MOUSE
05 Jul 2017 20:36:25,872 INFO : Inserting sp|Q9R0L6|PCM1_MOUSE
05 Jul 2017 20:36:26,656 INFO : Inserting sp|Q9Z2Y3|HOME1_MOUSE
05 Jul 2017 20:36:28,303 INFO : Inserting sp|P01870|IGHG_RABIT
05 Jul 2017 20:36:29,836 INFO : Completed import of Skyline document from Supplemental-Data-2_2017-07-04_17-42-49.sky.zip
05 Jul 2017 20:36:29,842 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/MacCoss%20-%20Homer2%20Interactome/@files/export/xar/experiments_and_runs.xar.exploded/Run18187/Supplemental-Data-2_2017-07-04_17-42-49.sky.zip into the system
05 Jul 2017 20:36:29,842 INFO : Done importing xar
05 Jul 2017 20:36:29,846 INFO : Loading pages and webpart properties
05 Jul 2017 20:36:29,867 INFO : Done importing pages and webpart properties
05 Jul 2017 20:36:29,867 INFO : 
05 Jul 2017 20:36:29,867 INFO : Experiment import completed successfully.
05 Jul 2017 20:36:29,867 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
05 Jul 2017 20:36:29,874 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
05 Jul 2017 20:36:29,875 INFO : 
05 Jul 2017 20:36:29,875 INFO : Finishing up experiment copy.
05 Jul 2017 20:36:29,876 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
05 Jul 2017 20:36:29,908 INFO : Updating access URL to point to the new copy of the data.
05 Jul 2017 20:36:29,926 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'