13 Feb 2017 12:52:34,425 INFO : Copying experiment "Stoichiometric surface density model" from folder /Lund University IMP/Stoichiometric Density Model to /Panorama Public/2017/Lund U. IMP - Stoichiometric Density Model
13 Feb 2017 12:52:34,425 INFO : =======================================
13 Feb 2017 12:52:34,486 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
13 Feb 2017 12:52:34,489 INFO : 
13 Feb 2017 12:52:34,489 INFO : Exporting experiment.
13 Feb 2017 12:52:41,656 INFO : 
13 Feb 2017 12:52:41,656 INFO : Experiment export completed successfully.
13 Feb 2017 12:52:41,656 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
13 Feb 2017 12:52:41,670 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
13 Feb 2017 12:52:41,671 INFO : 
13 Feb 2017 12:52:41,671 INFO : Importing experiment.
13 Feb 2017 12:52:41,671 WARN : Import of groups outside of project context not supported.
13 Feb 2017 12:52:41,675 INFO : Loading folder properties (folder type, settings and active modules)
13 Feb 2017 12:52:41,760 INFO : Done importing folder properties (folder type, settings and active modules)
13 Feb 2017 12:52:41,763 INFO : Loading container specific module properties
13 Feb 2017 12:52:41,769 INFO : Done importing container specific module properties
13 Feb 2017 12:52:41,772 INFO : Loading wikis
13 Feb 2017 12:52:41,783 INFO : 0 wikis imported
13 Feb 2017 12:52:41,783 INFO : Done importing wikis
13 Feb 2017 12:52:41,786 INFO : Loading xar
13 Feb 2017 12:52:42,278 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip'
13 Feb 2017 12:52:42,284 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip.Core'
13 Feb 2017 12:52:42,288 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip.Output'
13 Feb 2017 12:52:42,288 DEBUG: Protocol import complete
13 Feb 2017 12:52:42,337 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-2767:Rtoichiometric+surface+density+model'
13 Feb 2017 12:52:42,338 DEBUG: Experiment/Run group import complete
13 Feb 2017 12:52:42,408 DEBUG: Protocol action set import complete
13 Feb 2017 12:52:42,451 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip'
13 Feb 2017 12:52:42,550 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2767:c2bef03f-0b97-1034-9eb2-3013bb9b9b3a'
13 Feb 2017 12:52:42,550 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip.Core'
13 Feb 2017 12:52:42,554 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip.Output'
13 Feb 2017 12:52:42,555 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2767:c2bef0f7-0b97-1034-9eb2-3013bb9b9b3a'
13 Feb 2017 12:52:42,564 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip'
13 Feb 2017 12:52:42,574 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2767:1f0ff9fd-a2a3-1034-9a67-3013bb9b3f59'
13 Feb 2017 12:52:42,574 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip.Core'
13 Feb 2017 12:52:42,578 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2767:TargetedMS.ImportSkyZip.Output'
13 Feb 2017 12:52:42,579 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2767:1f0ffaa5-a2a3-1034-9a67-3013bb9b3f59'
13 Feb 2017 12:52:42,580 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Lund%20U.%20IMP%20-%20Stoichiometric%20Density%20Model/@files/export/xar/experiments_and_runs.xar.exploded/Run7737/Log/Surface_density_model_results_2016-06-03_12-04-18.sky.zip into the system
13 Feb 2017 12:52:42,584 INFO : Starting import from Surface_density_model_results_2016-06-03_12-04-18.sky.zip
13 Feb 2017 12:52:42,595 INFO : Starting to import Skyline document from Surface_density_model_results_2016-06-03_12-04-18.sky.zip
13 Feb 2017 12:52:42,596 INFO : Expanding iRT_OptGrad_30min.irtdb
13 Feb 2017 12:52:42,596 INFO : Expanding Surface_density_model_results.skyd
13 Feb 2017 12:52:43,307 INFO : Expanding Surface_density_model_results.sky.view
13 Feb 2017 12:52:43,308 INFO : Expanding Surface_density_model_results.sky
13 Feb 2017 12:52:43,338 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62
13 Feb 2017 12:52:43,775 INFO : Inserting BaccusPeptides
13 Feb 2017 12:52:46,711 INFO : Inserting Human_C-Factor-H
13 Feb 2017 12:52:47,251 INFO : Inserting Human_C1q-A
13 Feb 2017 12:52:47,699 INFO : Inserting Human_C1q-B
13 Feb 2017 12:52:48,229 INFO : Inserting Human_C1q-C
13 Feb 2017 12:52:48,671 INFO : Inserting Human_C1s
13 Feb 2017 12:52:49,133 INFO : Inserting Human_C3
13 Feb 2017 12:52:49,642 INFO : Inserting Human_C4
13 Feb 2017 12:52:50,209 INFO : Inserting Human_C5
13 Feb 2017 12:52:50,850 INFO : Inserting Human_C6
13 Feb 2017 12:52:51,389 INFO : Inserting Human_C7
13 Feb 2017 12:52:51,913 INFO : Inserting Human_C8a
13 Feb 2017 12:52:52,424 INFO : Inserting Human_C8b
13 Feb 2017 12:52:52,956 INFO : Inserting Human_C8g
13 Feb 2017 12:52:53,503 INFO : Inserting Human_C9
13 Feb 2017 12:52:54,094 INFO : Inserting Human_Fibrinogen-beta
13 Feb 2017 12:52:54,661 INFO : Inserting Human_Fibrinogen-gamma
13 Feb 2017 12:52:55,257 INFO : Inserting Human_Fibrinogen-alpha
13 Feb 2017 12:52:55,827 INFO : Inserting Human_Fibronectin
13 Feb 2017 12:52:56,387 INFO : Inserting Human_IgG
13 Feb 2017 12:52:56,969 INFO : Inserting Human_IgG1
13 Feb 2017 12:52:57,514 INFO : Inserting Human_IgG2
13 Feb 2017 12:52:58,002 INFO : Inserting Human_IgG3
13 Feb 2017 12:52:58,582 INFO : Inserting Human_IgG4
13 Feb 2017 12:52:59,150 INFO : Inserting Human_Serum-albumin
13 Feb 2017 12:52:59,669 INFO : Inserting RTpeptides_NEW
13 Feb 2017 12:53:00,842 INFO : Inserting SPy_Fibronectin-bp
13 Feb 2017 12:53:01,226 INFO : Inserting SPy_M-protein
13 Feb 2017 12:53:01,694 INFO : Inserting SPy_NAD-glycohydrolase
13 Feb 2017 12:53:02,068 INFO : Inserting SPy_Protein-H
13 Feb 2017 12:53:02,459 INFO : Inserting SPy0052_LSU-ribosomal-protein-L2p-(L8e)
13 Feb 2017 12:53:03,001 INFO : Inserting SPy0165_Nicotine-adenine-dinucleotide-glycohydrolase-(NADGH)
13 Feb 2017 12:53:03,363 INFO : Inserting SPy0273_Translation-elongation-factor-G
13 Feb 2017 12:53:03,839 INFO : Inserting SPy0274_NAD-dep-glyceraldehyde-3-phosphate-dehydrogenase/Plasmin-receptor
13 Feb 2017 12:53:04,284 INFO : Inserting SPy0316_hypothetical-protein
13 Feb 2017 12:53:04,768 INFO : Inserting SPy0399_Thymidylate-kinase
13 Feb 2017 12:53:05,256 INFO : Inserting SPy0416_Serine-endopeptidase-ScpC
13 Feb 2017 12:53:05,638 INFO : Inserting SPy0593_bacterial-seryl-tRNA-synthetase-related
13 Feb 2017 12:53:06,102 INFO : Inserting SPy0651_Asparaginyl-tRNA-synthetase
13 Feb 2017 12:53:06,567 INFO : Inserting SPy0731_Enolase
13 Feb 2017 12:53:07,077 INFO : Inserting SPy0760_ATP-synthase-beta-chain
13 Feb 2017 12:53:07,589 INFO : Inserting SPy1020_Zn-dependent-hydrolase
13 Feb 2017 12:53:08,039 INFO : Inserting SPy1101_UDP-N-acetylenolpyruvoylglucosamine-reductase
13 Feb 2017 12:53:08,518 INFO : Inserting SPy1150_NADH-oxidase-H2O-forming
13 Feb 2017 12:53:08,977 INFO : Inserting SPy1357_Protein-G-related-alpha-2-macroglobulin-binding-protein-(GRAB)
13 Feb 2017 12:53:09,952 INFO : Inserting SPy1372_Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system
13 Feb 2017 12:53:10,407 INFO : Inserting SPy1406_Manganese-superoxide-dismutase
13 Feb 2017 12:53:10,884 INFO : Inserting SPy1520_Cell-division-protein-FtsZ
13 Feb 2017 12:53:11,384 INFO : Inserting SPy1687_hypothetical-protein
13 Feb 2017 12:53:12,413 INFO : Inserting SPy1689_Glycyl-tRNA-synthetase-alpha-chain
13 Feb 2017 12:53:12,897 INFO : Inserting SPy1748_3-oxoacyl-
13 Feb 2017 12:53:13,366 INFO : Inserting SPy1884_Putative-stomatin/prohibitin-family-membrane-protease-subunit-YbbK
13 Feb 2017 12:53:13,816 INFO : Inserting SPy2005_hypothetical-protein
13 Feb 2017 12:53:14,322 INFO : Inserting SPy2010_C5a-peptidase
13 Feb 2017 12:53:15,709 INFO : Inserting SPy2033_hypothetical-protein
13 Feb 2017 12:53:16,215 INFO : Inserting SPy2039_SpeB
13 Feb 2017 12:53:16,731 INFO : Inserting SPy2072_Heat-shock-protein-60-family-co-chaperone-GroES
13 Feb 2017 12:53:17,262 INFO : Inserting SPy2093_Translation-elongation-factor-Ts
13 Feb 2017 12:53:17,756 INFO : Inserting SPy2157_Histidyl-tRNA-synthetase
13 Feb 2017 12:53:18,245 INFO : Inserting SPy2178_SSU-ribosomal-protein-S4p-(S9e)
13 Feb 2017 12:53:18,749 INFO : Completed import of Skyline document from Surface_density_model_results_2016-06-03_12-04-18.sky.zip
13 Feb 2017 12:53:18,757 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Lund%20U.%20IMP%20-%20Stoichiometric%20Density%20Model/@files/export/xar/experiments_and_runs.xar.exploded/Run7737/Log/Surface_density_model_results_2016-06-03_12-04-18.sky.zip into the system
13 Feb 2017 12:53:18,757 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Lund%20U.%20IMP%20-%20Stoichiometric%20Density%20Model/@files/export/xar/experiments_and_runs.xar.exploded/Run12260/Stoichiometric_model_dillution_series_final_2016-12-12_15-19-15.sky.zip into the system
13 Feb 2017 12:53:18,763 INFO : Starting import from Stoichiometric_model_dillution_series_final_2016-12-12_15-19-15.sky.zip
13 Feb 2017 12:53:18,771 INFO : Starting to import Skyline document from Stoichiometric_model_dillution_series_final_2016-12-12_15-19-15.sky.zip
13 Feb 2017 12:53:18,771 INFO : Expanding iRT_OptGrad_30min.irtdb
13 Feb 2017 12:53:18,772 INFO : Expanding Stoichiometric_model_dillution_series_final.skyd
13 Feb 2017 12:53:19,246 INFO : Expanding Stoichiometric_model_dillution_series_final.sky.view
13 Feb 2017 12:53:19,246 INFO : Expanding Stoichiometric_model_dillution_series_final.sky
13 Feb 2017 12:53:19,268 WARN : The version of this Skyline document is 3.6. This is newer than the highest supported version 2.62
13 Feb 2017 12:53:19,530 INFO : Inserting BaccusPeptides
13 Feb 2017 12:53:20,238 INFO : Inserting Human_C-Factor-H
13 Feb 2017 12:53:20,335 INFO : Inserting Human_C1q-A
13 Feb 2017 12:53:20,433 INFO : Inserting Human_C1q-B
13 Feb 2017 12:53:20,532 INFO : Inserting Human_C1q-C
13 Feb 2017 12:53:20,631 INFO : Inserting Human_C1s
13 Feb 2017 12:53:20,729 INFO : Inserting Human_C2
13 Feb 2017 12:53:20,866 INFO : Inserting Human_C3
13 Feb 2017 12:53:20,969 INFO : Inserting Human_C4-B
13 Feb 2017 12:53:21,076 INFO : Inserting Human_C5
13 Feb 2017 12:53:21,181 INFO : Inserting Human_C6
13 Feb 2017 12:53:21,294 INFO : Inserting Human_C7
13 Feb 2017 12:53:21,398 INFO : Inserting Human_C8a
13 Feb 2017 12:53:21,502 INFO : Inserting Human_C8b
13 Feb 2017 12:53:21,606 INFO : Inserting Human_C8g
13 Feb 2017 12:53:21,707 INFO : Inserting Human_C9
13 Feb 2017 12:53:21,802 INFO : Inserting Human_Fibrinogen-beta
13 Feb 2017 12:53:21,898 INFO : Inserting Human_Fibrinogen-gamma
13 Feb 2017 12:53:21,993 INFO : Inserting Human_Fibrinogen-alpha
13 Feb 2017 12:53:22,090 INFO : Inserting Human_Fibronectin
13 Feb 2017 12:53:22,186 INFO : Inserting Human_IgG
13 Feb 2017 12:53:22,512 INFO : Inserting Human_IgG1
13 Feb 2017 12:53:22,608 INFO : Inserting Human_IgG2
13 Feb 2017 12:53:22,723 INFO : Inserting Human_IgG3
13 Feb 2017 12:53:22,821 INFO : Inserting Human_IgG4
13 Feb 2017 12:53:22,918 INFO : Inserting Human_Serum-albumin
13 Feb 2017 12:53:23,018 INFO : Inserting RTpeptides_NEW
13 Feb 2017 12:53:23,540 INFO : Inserting SPy_C5a-peptidase
13 Feb 2017 12:53:23,638 INFO : Inserting SPy_Fibronectin-bp
13 Feb 2017 12:53:23,735 INFO : Inserting SPy_M-protein
13 Feb 2017 12:53:24,039 INFO : Inserting SPy_NAD-glycohydrolase
13 Feb 2017 12:53:24,144 INFO : Inserting SPy_Protein-H
13 Feb 2017 12:53:24,293 INFO : Inserting SPy0052_LSU-ribosomal-protein-L2p-(L8e)
13 Feb 2017 12:53:24,432 INFO : Inserting SPy0165_Nicotine-adenine-dinucleotide-glycohydrolase-(NADGH)
13 Feb 2017 12:53:24,568 INFO : Inserting SPy0273_Translation-elongation-factor-G
13 Feb 2017 12:53:24,690 INFO : Inserting SPy0274_NAD-dep-glyceraldehyde-3-phosphate-dehydrogenase/Plasmin-receptor
13 Feb 2017 12:53:24,818 INFO : Inserting SPy0316_hypothetical-protein
13 Feb 2017 12:53:24,878 INFO : Inserting SPy0399_Thymidylate-kinase
13 Feb 2017 12:53:24,937 INFO : Inserting SPy0416_Serine-endopeptidase-ScpC
13 Feb 2017 12:53:24,996 INFO : Inserting SPy0593_bacterial-seryl-tRNA-synthetase-related
13 Feb 2017 12:53:25,055 INFO : Inserting SPy0651_Asparaginyl-tRNA-synthetase
13 Feb 2017 12:53:25,114 INFO : Inserting SPy0731_Enolase
13 Feb 2017 12:53:25,208 INFO : Inserting SPy0760_ATP-synthase-beta-chain
13 Feb 2017 12:53:25,355 INFO : Inserting SPy1020_Zn-dependent-hydrolase
13 Feb 2017 12:53:25,502 INFO : Inserting SPy1101_UDP-N-acetylenolpyruvoylglucosamine-reductase
13 Feb 2017 12:53:25,649 INFO : Inserting SPy1150_NADH-oxidase-H2O-forming
13 Feb 2017 12:53:25,795 INFO : Inserting SPy1357_Protein-G-related-alpha-2-macroglobulin-binding-protein-(GRAB)
13 Feb 2017 12:53:26,088 INFO : Inserting SPy1372_Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system
13 Feb 2017 12:53:26,236 INFO : Inserting SPy1406_Manganese-superoxide-dismutase
13 Feb 2017 12:53:26,384 INFO : Inserting SPy1520_Cell-division-protein-FtsZ
13 Feb 2017 12:53:26,529 INFO : Inserting SPy1687_hypothetical-protein
13 Feb 2017 12:53:26,841 INFO : Inserting SPy1689_Glycyl-tRNA-synthetase-alpha-chain
13 Feb 2017 12:53:26,987 INFO : Inserting SPy1748_3-oxoacyl-
13 Feb 2017 12:53:27,134 INFO : Inserting SPy1884_Putative-stomatin/prohibitin-family-membrane-protease-subunit-YbbK
13 Feb 2017 12:53:27,282 INFO : Inserting SPy1983_Collagen-like-surface-protein
13 Feb 2017 12:53:27,593 INFO : Inserting SPy2005_hypothetical-protein
13 Feb 2017 12:53:27,740 INFO : Inserting SPy2010_C5a-peptidase
13 Feb 2017 12:53:28,033 INFO : Inserting SPy2033_hypothetical-protein
13 Feb 2017 12:53:28,181 INFO : Inserting SPy2039_SpeB
13 Feb 2017 12:53:28,327 INFO : Inserting SPy2072_Heat-shock-protein-60-family-co-chaperone-GroES
13 Feb 2017 12:53:28,474 INFO : Inserting SPy2093_Translation-elongation-factor-Ts
13 Feb 2017 12:53:28,621 INFO : Inserting SPy2157_Histidyl-tRNA-synthetase
13 Feb 2017 12:53:28,768 INFO : Inserting SPy2178_SSU-ribosomal-protein-S4p-(S9e)
13 Feb 2017 12:53:28,917 INFO : Completed import of Skyline document from Stoichiometric_model_dillution_series_final_2016-12-12_15-19-15.sky.zip
13 Feb 2017 12:53:33,037 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Lund%20U.%20IMP%20-%20Stoichiometric%20Density%20Model/@files/export/xar/experiments_and_runs.xar.exploded/Run12260/Stoichiometric_model_dillution_series_final_2016-12-12_15-19-15.sky.zip into the system
13 Feb 2017 12:53:33,037 INFO : Done importing xar
13 Feb 2017 12:53:33,045 INFO : Loading pages and webpart properties
13 Feb 2017 12:53:33,095 INFO : Done importing pages and webpart properties
13 Feb 2017 12:53:33,096 INFO : 
13 Feb 2017 12:53:33,096 INFO : Experiment import completed successfully.
13 Feb 2017 12:53:33,096 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
13 Feb 2017 12:53:33,112 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
13 Feb 2017 12:53:33,112 INFO : 
13 Feb 2017 12:53:33,112 INFO : Finishing up experiment copy.
13 Feb 2017 12:53:33,114 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
13 Feb 2017 12:53:33,145 INFO : Updating access URL to point to the new copy of the data.
13 Feb 2017 12:53:33,188 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'