25 Jan 2017 09:26:43,199 INFO : Copying experiment "Quantitative mass spectrometry analysis of PD-L1 protein expression, N-glycosylation and expression stoichiometry with PD-1 and PD-L2 in human melanoma" from folder /Liebler/Melanoma_Paper to /Panorama Public/2017/Liebler - Melanoma Paper
25 Jan 2017 09:26:43,200 INFO : =======================================
25 Jan 2017 09:26:43,303 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
25 Jan 2017 09:26:43,305 INFO :
25 Jan 2017 09:26:43,306 INFO : Exporting experiment.
25 Jan 2017 09:28:29,826 INFO :
25 Jan 2017 09:28:29,826 INFO : Experiment export completed successfully.
25 Jan 2017 09:28:29,826 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
25 Jan 2017 09:28:29,851 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
25 Jan 2017 09:28:29,851 INFO :
25 Jan 2017 09:28:29,851 INFO : Importing experiment.
25 Jan 2017 09:28:29,861 WARN : Import of groups outside of project context not supported.
25 Jan 2017 09:28:29,869 INFO : Loading folder properties (folder type, settings and active modules)
25 Jan 2017 09:28:29,998 INFO : Done importing folder properties (folder type, settings and active modules)
25 Jan 2017 09:28:30,004 INFO : Loading container specific module properties
25 Jan 2017 09:28:30,014 INFO : Done importing container specific module properties
25 Jan 2017 09:28:30,022 INFO : Loading wikis
25 Jan 2017 09:28:30,046 INFO : 0 wikis imported
25 Jan 2017 09:28:30,046 INFO : Done importing wikis
25 Jan 2017 09:28:30,052 INFO : Loading xar
25 Jan 2017 09:28:41,833 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip'
25 Jan 2017 09:28:41,841 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Core'
25 Jan 2017 09:28:41,850 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Output'
25 Jan 2017 09:28:41,850 DEBUG: Protocol import complete
25 Jan 2017 09:28:41,866 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-2747:Quantitative+mass+spectrometry+analysis+of+PD-L1+protein+expression%2C+N-glycosylation+and+expression+stoichiometry+with+PD-1+and+PD-L2+in+human+melanoma'
25 Jan 2017 09:28:41,866 DEBUG: Experiment/Run group import complete
25 Jan 2017 09:28:42,044 DEBUG: Protocol action set import complete
25 Jan 2017 09:28:42,082 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip'
25 Jan 2017 09:28:42,336 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2747:38e18ea9-af98-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,336 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Core'
25 Jan 2017 09:28:42,344 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Output'
25 Jan 2017 09:28:42,345 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2747:38e18f61-af98-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,366 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip'
25 Jan 2017 09:28:42,418 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2747:b31256eb-af81-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,418 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Core'
25 Jan 2017 09:28:42,423 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Output'
25 Jan 2017 09:28:42,425 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2747:b3125719-af81-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,443 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip'
25 Jan 2017 09:28:42,493 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2747:b3125746-af81-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,493 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Core'
25 Jan 2017 09:28:42,499 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Output'
25 Jan 2017 09:28:42,500 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2747:b3125765-af81-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,521 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip'
25 Jan 2017 09:28:42,541 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2747:38e19012-af98-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,541 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Core'
25 Jan 2017 09:28:42,547 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Output'
25 Jan 2017 09:28:42,549 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2747:38e19083-af98-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,571 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip'
25 Jan 2017 09:28:42,607 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2747:38e19a2b-af98-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,608 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Core'
25 Jan 2017 09:28:42,613 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2747:TargetedMS.ImportSkyZip.Output'
25 Jan 2017 09:28:42,615 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2747:38e19c24-af98-1034-9a67-3013bb9b3f59'
25 Jan 2017 09:28:42,618 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12654/Calibration_Curve_2016-12-28_19-49-48.sky.zip into the system
25 Jan 2017 09:28:42,625 INFO : Starting import from Calibration_Curve_2016-12-28_19-49-48.sky.zip
25 Jan 2017 09:28:42,641 INFO : Starting to import Skyline document from Calibration_Curve_2016-12-28_19-49-48.sky.zip
25 Jan 2017 09:28:42,642 INFO : Expanding Calibration_Curve.skyd
25 Jan 2017 09:28:44,837 INFO : Expanding Calibration_Curve.sky.view
25 Jan 2017 09:28:44,838 INFO : Expanding Calibration_Curve.sky
25 Jan 2017 09:28:44,844 WARN : The version of this Skyline document is 3.6. This is newer than the highest supported version 2.62
25 Jan 2017 09:28:44,936 INFO : Inserting CD3D
25 Jan 2017 09:28:46,102 INFO : Inserting CD3E
25 Jan 2017 09:28:46,976 INFO : Inserting CD3G
25 Jan 2017 09:28:48,264 INFO : Inserting CD4
25 Jan 2017 09:28:50,476 INFO : Inserting CD8A
25 Jan 2017 09:28:51,450 INFO : Inserting CD8B
25 Jan 2017 09:28:52,575 INFO : Inserting PD1L1
25 Jan 2017 09:28:56,244 INFO : Inserting PDL2
25 Jan 2017 09:28:58,398 INFO : Inserting PD1|NP_005009.2|
25 Jan 2017 09:29:00,740 INFO : Inserting Actin
25 Jan 2017 09:29:01,946 INFO : Inserting PDL1_glyco
25 Jan 2017 09:29:04,445 INFO : Completed import of Skyline document from Calibration_Curve_2016-12-28_19-49-48.sky.zip
25 Jan 2017 09:29:04,453 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12654/Calibration_Curve_2016-12-28_19-49-48.sky.zip into the system
25 Jan 2017 09:29:04,453 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12652/Recomb_PDL1_titration_2016-12-28_19-50-02.sky.zip into the system
25 Jan 2017 09:29:04,458 INFO : Starting import from Recomb_PDL1_titration_2016-12-28_19-50-02.sky.zip
25 Jan 2017 09:29:04,465 INFO : Starting to import Skyline document from Recomb_PDL1_titration_2016-12-28_19-50-02.sky.zip
25 Jan 2017 09:29:04,465 INFO : Expanding Recomb_PDL1_titration.skyd
25 Jan 2017 09:29:04,521 INFO : Expanding Recomb_PDL1_titration.sky.view
25 Jan 2017 09:29:04,521 INFO : Expanding Recomb_PDL1_titration.sky
25 Jan 2017 09:29:04,527 WARN : The version of this Skyline document is 3.6. This is newer than the highest supported version 2.62
25 Jan 2017 09:29:04,668 INFO : Inserting PD1L1
25 Jan 2017 09:29:05,639 INFO : Inserting Actin
25 Jan 2017 09:29:05,754 INFO : Completed import of Skyline document from Recomb_PDL1_titration_2016-12-28_19-50-02.sky.zip
25 Jan 2017 09:29:13,701 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12652/Recomb_PDL1_titration_2016-12-28_19-50-02.sky.zip into the system
25 Jan 2017 09:29:13,701 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12653/22melanomas_CD4-ILG_(Re-Import)_2016-12-28_19-49-25.sky.zip into the system
25 Jan 2017 09:29:13,705 INFO : Starting import from 22melanomas_CD4-ILG_(Re-Import)_2016-12-28_19-49-25.sky.zip
25 Jan 2017 09:29:13,710 INFO : Starting to import Skyline document from 22melanomas_CD4-ILG_(Re-Import)_2016-12-28_19-49-25.sky.zip
25 Jan 2017 09:29:13,710 INFO : Expanding 22melanomas_CD4-ILG_(Re-Import).skyd
25 Jan 2017 09:29:13,842 INFO : Expanding 22melanomas_CD4-ILG_(Re-Import).sky.view
25 Jan 2017 09:29:13,842 INFO : Expanding 22melanomas_CD4-ILG_(Re-Import).sky
25 Jan 2017 09:29:13,844 WARN : The version of this Skyline document is 3.6. This is newer than the highest supported version 2.62
25 Jan 2017 09:29:13,892 INFO : Inserting CD4
25 Jan 2017 09:29:14,565 INFO : Completed import of Skyline document from 22melanomas_CD4-ILG_(Re-Import)_2016-12-28_19-49-25.sky.zip
25 Jan 2017 09:29:16,070 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12653/22melanomas_CD4-ILG_(Re-Import)_2016-12-28_19-49-25.sky.zip into the system
25 Jan 2017 09:29:16,070 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12655/B12_melanoma_reproducibility_test_2016-12-28_19-49-39.sky.zip into the system
25 Jan 2017 09:29:16,073 INFO : Starting import from B12_melanoma_reproducibility_test_2016-12-28_19-49-39.sky.zip
25 Jan 2017 09:29:16,075 INFO : Starting to import Skyline document from B12_melanoma_reproducibility_test_2016-12-28_19-49-39.sky.zip
25 Jan 2017 09:29:16,075 INFO : Expanding B12_melanoma_reproducibility_test.skyd
25 Jan 2017 09:29:18,585 INFO : Expanding B12_melanoma_reproducibility_test.sky.view
25 Jan 2017 09:29:18,585 INFO : Expanding B12_melanoma_reproducibility_test.sky
25 Jan 2017 09:29:18,588 WARN : The version of this Skyline document is 3.6. This is newer than the highest supported version 2.62
25 Jan 2017 09:29:18,619 INFO : Inserting CD3D
25 Jan 2017 09:29:18,789 INFO : Inserting CD3E
25 Jan 2017 09:29:18,939 INFO : Inserting CD3G
25 Jan 2017 09:29:19,100 INFO : Inserting CD4
25 Jan 2017 09:29:19,308 INFO : Inserting CD8A
25 Jan 2017 09:29:19,858 INFO : Inserting CD8B
25 Jan 2017 09:29:20,083 INFO : Inserting PD1L1
25 Jan 2017 09:29:21,247 INFO : Inserting PDL2
25 Jan 2017 09:29:22,081 INFO : Inserting PD1|NP_005009.2|
25 Jan 2017 09:29:23,154 INFO : Inserting Actin
25 Jan 2017 09:29:23,965 INFO : Inserting Other_targets
25 Jan 2017 09:29:26,816 INFO : Inserting VISTA
25 Jan 2017 09:29:27,108 INFO : Inserting TIM-3
25 Jan 2017 09:29:27,406 INFO : Completed import of Skyline document from B12_melanoma_reproducibility_test_2016-12-28_19-49-39.sky.zip
25 Jan 2017 09:29:30,672 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12655/B12_melanoma_reproducibility_test_2016-12-28_19-49-39.sky.zip into the system
25 Jan 2017 09:29:30,672 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12656/22melanomas_ALL_TARGETS_2016-12-28_19-49-10.sky.zip into the system
25 Jan 2017 09:29:30,676 INFO : Starting import from 22melanomas_ALL_TARGETS_2016-12-28_19-49-10.sky.zip
25 Jan 2017 09:29:30,681 INFO : Starting to import Skyline document from 22melanomas_ALL_TARGETS_2016-12-28_19-49-10.sky.zip
25 Jan 2017 09:29:30,681 INFO : Expanding 22melanomas_ALL_TARGETS.skyd
25 Jan 2017 09:29:44,135 INFO : Expanding 22melanomas_ALL_TARGETS.sky.view
25 Jan 2017 09:29:44,135 INFO : Expanding 22melanomas_ALL_TARGETS.sky
25 Jan 2017 09:29:44,147 WARN : The version of this Skyline document is 3.6. This is newer than the highest supported version 2.62
25 Jan 2017 09:29:44,287 INFO : Inserting CD3D
25 Jan 2017 09:29:45,654 INFO : Inserting CD3E
25 Jan 2017 09:29:46,624 INFO : Inserting CD3G
25 Jan 2017 09:29:48,458 INFO : Inserting CD4
25 Jan 2017 09:29:50,322 INFO : Inserting CD8A
25 Jan 2017 09:29:53,104 INFO : Inserting CD8B
25 Jan 2017 09:29:53,915 INFO : Inserting PD1L1
25 Jan 2017 09:29:58,428 INFO : Inserting PDL2
25 Jan 2017 09:30:00,959 INFO : Inserting PD1|NP_005009.2|
25 Jan 2017 09:30:06,252 INFO : Inserting Actin
25 Jan 2017 09:30:08,166 INFO : Inserting Other_targets
25 Jan 2017 09:30:21,844 INFO : Inserting VISTA
25 Jan 2017 09:30:23,000 INFO : Inserting TIM-3
25 Jan 2017 09:30:24,544 INFO : Inserting PDL1_glyco
25 Jan 2017 09:30:24,582 INFO : Completed import of Skyline document from 22melanomas_ALL_TARGETS_2016-12-28_19-49-10.sky.zip
25 Jan 2017 09:30:24,589 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Liebler%20-%20Melanoma%20Paper/@files/export/xar/experiments_and_runs.xar.exploded/Run12656/22melanomas_ALL_TARGETS_2016-12-28_19-49-10.sky.zip into the system
25 Jan 2017 09:30:24,589 INFO : Done importing xar
25 Jan 2017 09:30:24,646 INFO : Loading pages and webpart properties
25 Jan 2017 09:30:24,727 INFO : Done importing pages and webpart properties
25 Jan 2017 09:30:24,727 INFO :
25 Jan 2017 09:30:24,728 INFO : Experiment import completed successfully.
25 Jan 2017 09:30:24,728 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
25 Jan 2017 09:30:24,744 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
25 Jan 2017 09:30:24,744 INFO :
25 Jan 2017 09:30:24,744 INFO : Finishing up experiment copy.
25 Jan 2017 09:30:24,747 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
25 Jan 2017 09:30:24,767 INFO : Updating access URL to point to the new copy of the data.
25 Jan 2017 09:30:24,815 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'