10 Aug 2015 12:58:33,932 INFO : Copying experiment "Application of a quantitative SRM-based proteomics method to study iron starvation in Synechocystis sp. PCC 6803" from folder /University of Turku - Plant Biology/SRM_irondepr_2015 to /Panorama Public/2015/Muth-Pawlak - SRM_irondepr_2015
10 Aug 2015 12:58:33,933 INFO : =======================================
10 Aug 2015 12:58:34,048 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
10 Aug 2015 12:58:34,050 INFO : 
10 Aug 2015 12:58:34,050 INFO : Exporting experiment.
10 Aug 2015 12:58:36,955 INFO : 
10 Aug 2015 12:58:36,955 INFO : Experiment export completed successfully.
10 Aug 2015 12:58:36,955 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
10 Aug 2015 12:58:36,976 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
10 Aug 2015 12:58:36,976 INFO : 
10 Aug 2015 12:58:36,976 INFO : Importing experiment.
10 Aug 2015 12:58:36,976 WARN : Import of groups outside of project context not supported.
10 Aug 2015 12:58:36,979 INFO : Loading folder properties (folder type, settings and active modules)
10 Aug 2015 12:58:37,008 INFO : Done importing folder properties (folder type, settings and active modules)
10 Aug 2015 12:58:37,010 INFO : Done importing container specific module properties
10 Aug 2015 12:58:37,023 INFO : Loading wikis
10 Aug 2015 12:58:37,030 INFO : 0 wikis imported
10 Aug 2015 12:58:37,030 INFO : Done importing wikis
10 Aug 2015 12:58:37,034 INFO : Loading xar
10 Aug 2015 12:58:37,532 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip'
10 Aug 2015 12:58:37,538 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip.Core'
10 Aug 2015 12:58:37,545 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip.Output'
10 Aug 2015 12:58:37,545 DEBUG: Protocol import complete
10 Aug 2015 12:58:37,577 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-1370:Application+of+a+quantitative+SRM-based+proteomics+method+to+study+iron+starvation+in+Synechocystis+sp.+PCC+6803'
10 Aug 2015 12:58:37,577 DEBUG: Experiment/Run group import complete
10 Aug 2015 12:58:37,608 DEBUG: Protocol action set import complete
10 Aug 2015 12:58:37,667 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip'
10 Aug 2015 12:58:37,804 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1370:f148bf22-217a-1033-89b5-3013bb9b75bc'
10 Aug 2015 12:58:37,805 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip.Core'
10 Aug 2015 12:58:37,811 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip.Output'
10 Aug 2015 12:58:37,812 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1370:f148bf2f-217a-1033-89b5-3013bb9b75bc'
10 Aug 2015 12:58:37,833 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip'
10 Aug 2015 12:58:37,866 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1370:f148bd93-217a-1033-89b5-3013bb9b75bc'
10 Aug 2015 12:58:37,866 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip.Core'
10 Aug 2015 12:58:37,872 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip.Output'
10 Aug 2015 12:58:37,874 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1370:f148bda0-217a-1033-89b5-3013bb9b75bc'
10 Aug 2015 12:58:37,892 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip'
10 Aug 2015 12:58:37,907 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1370:f148bc9a-217a-1033-89b5-3013bb9b75bc'
10 Aug 2015 12:58:37,907 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip.Core'
10 Aug 2015 12:58:37,912 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1370:TargetedMS.ImportSkyZip.Output'
10 Aug 2015 12:58:37,914 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1370:f148bcda-217a-1033-89b5-3013bb9b75bc'
10 Aug 2015 12:58:37,915 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Muth-Pawlak%20-%20SRM_irondepr_2015/@files/export/xar/experiments_and_runs.xar.exploded/Run2604/10proteins_ND_Vuorijoki_et_al_2015_2015-08-10_15-55-44.sky.zip into the system
10 Aug 2015 12:58:37,918 INFO : Starting import from 10proteins_ND_Vuorijoki_et_al_2015_2015-08-10_15-55-44.sky.zip
10 Aug 2015 12:58:37,929 INFO : Starting to import Skyline document from 10proteins_ND_Vuorijoki_et_al_2015_2015-08-10_15-55-44.sky.zip
10 Aug 2015 12:58:37,930 INFO : Expanding Refined iRT.irtdb
10 Aug 2015 12:58:37,930 INFO : Expanding Syn_HCD_IronDepr.blib
10 Aug 2015 12:58:37,931 INFO : Expanding Syn_HCD_IronDepr.redundant.blib
10 Aug 2015 12:58:37,933 INFO : Expanding 10proteins_ND_Vuorijoki_et_al_2015.skyd
10 Aug 2015 12:58:38,130 INFO : Expanding 10proteins_ND_Vuorijoki_et_al_2015.sky.view
10 Aug 2015 12:58:38,131 INFO : Expanding 10proteins_ND_Vuorijoki_et_al_2015.sky
10 Aug 2015 12:58:38,134 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62
10 Aug 2015 12:58:38,138 WARN : Input iRT database does not exist iRT_Values_Refined.irtdb
10 Aug 2015 12:58:38,304 INFO : Inserting sll0219
10 Aug 2015 12:58:38,498 INFO : Inserting sll0704
10 Aug 2015 12:58:38,609 INFO : Inserting sll0217
10 Aug 2015 12:58:38,777 INFO : Inserting slr0040
10 Aug 2015 12:58:38,944 INFO : Inserting slr0331
10 Aug 2015 12:58:39,053 INFO : Inserting slr0749
10 Aug 2015 12:58:39,169 INFO : Inserting slr0846
10 Aug 2015 12:58:39,292 INFO : Inserting slr1529
10 Aug 2015 12:58:39,449 INFO : Inserting slr1738
10 Aug 2015 12:58:39,606 INFO : Inserting ssl0564
10 Aug 2015 12:58:39,724 INFO : Completed import of Skyline document from 10proteins_ND_Vuorijoki_et_al_2015_2015-08-10_15-55-44.sky.zip
10 Aug 2015 12:58:39,730 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Muth-Pawlak%20-%20SRM_irondepr_2015/@files/export/xar/experiments_and_runs.xar.exploded/Run2604/10proteins_ND_Vuorijoki_et_al_2015_2015-08-10_15-55-44.sky.zip into the system
10 Aug 2015 12:58:39,730 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Muth-Pawlak%20-%20SRM_irondepr_2015/@files/export/xar/experiments_and_runs.xar.exploded/Run2603/10proteinsOPT_WT_Vuorijoki_et_al_2015-08-10_15-38-31.sky.zip into the system
10 Aug 2015 12:58:39,733 INFO : Starting import from 10proteinsOPT_WT_Vuorijoki_et_al_2015-08-10_15-38-31.sky.zip
10 Aug 2015 12:58:39,738 INFO : Starting to import Skyline document from 10proteinsOPT_WT_Vuorijoki_et_al_2015-08-10_15-38-31.sky.zip
10 Aug 2015 12:58:39,739 INFO : Expanding Refined iRT.irtdb
10 Aug 2015 12:58:39,739 INFO : Expanding Syn_HCD_IronDepr.blib
10 Aug 2015 12:58:39,740 INFO : Expanding Syn_HCD_IronDepr.redundant.blib
10 Aug 2015 12:58:39,743 INFO : Expanding 10proteinsOPT_WT_Vuorijoki_et_al.skyd
10 Aug 2015 12:58:39,776 INFO : Expanding 10proteinsOPT_WT_Vuorijoki_et_al.sky.view
10 Aug 2015 12:58:39,776 INFO : Expanding 10proteinsOPT_WT_Vuorijoki_et_al.sky
10 Aug 2015 12:58:39,779 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62
10 Aug 2015 12:58:39,782 WARN : Input iRT database does not exist iRT_Values_Refined.irtdb
10 Aug 2015 12:58:39,813 INFO : Inserting sll0219
10 Aug 2015 12:58:39,853 INFO : Inserting sll0704
10 Aug 2015 12:58:39,894 INFO : Inserting sll0217
10 Aug 2015 12:58:39,952 INFO : Inserting slr0040
10 Aug 2015 12:58:39,992 INFO : Inserting slr0331
10 Aug 2015 12:58:40,021 INFO : Inserting slr0749
10 Aug 2015 12:58:40,060 INFO : Inserting slr0846
10 Aug 2015 12:58:40,089 INFO : Inserting slr1529
10 Aug 2015 12:58:40,133 INFO : Inserting slr1738
10 Aug 2015 12:58:40,173 INFO : Inserting ssl0564
10 Aug 2015 12:58:40,201 INFO : Completed import of Skyline document from 10proteinsOPT_WT_Vuorijoki_et_al_2015-08-10_15-38-31.sky.zip
10 Aug 2015 12:58:40,208 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Muth-Pawlak%20-%20SRM_irondepr_2015/@files/export/xar/experiments_and_runs.xar.exploded/Run2603/10proteinsOPT_WT_Vuorijoki_et_al_2015-08-10_15-38-31.sky.zip into the system
10 Aug 2015 12:58:40,208 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Muth-Pawlak%20-%20SRM_irondepr_2015/@files/export/xar/experiments_and_runs.xar.exploded/Run2602/96proteins_Vuorijoki_et_al_2015_2015-08-10_15-31-19.sky.zip into the system
10 Aug 2015 12:58:40,210 INFO : Starting import from 96proteins_Vuorijoki_et_al_2015_2015-08-10_15-31-19.sky.zip
10 Aug 2015 12:58:40,216 INFO : Starting to import Skyline document from 96proteins_Vuorijoki_et_al_2015_2015-08-10_15-31-19.sky.zip
10 Aug 2015 12:58:40,216 INFO : Expanding Refined iRT.irtdb
10 Aug 2015 12:58:40,217 INFO : Expanding Syn_HCD_IronDepr.blib
10 Aug 2015 12:58:40,222 INFO : Expanding Syn_HCD_IronDepr.redundant.blib
10 Aug 2015 12:58:40,242 INFO : Expanding Syn_CID_IronDepr.blib
10 Aug 2015 12:58:40,245 INFO : Expanding Syn_CID_IronDepr.redundant.blib
10 Aug 2015 12:58:40,256 INFO : Expanding 96proteins_Vuorijoki_et_al_2015.skyd
10 Aug 2015 12:58:40,451 INFO : Expanding 96proteins_Vuorijoki_et_al_2015.sky.view
10 Aug 2015 12:58:40,451 INFO : Expanding 96proteins_Vuorijoki_et_al_2015.sky
10 Aug 2015 12:58:40,489 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62
10 Aug 2015 12:58:40,493 WARN : Input iRT database does not exist iRT_Values_Refined.irtdb
10 Aug 2015 12:58:40,603 INFO : Inserting ssl2982
10 Aug 2015 12:58:40,901 INFO : Inserting slr0150
10 Aug 2015 12:58:41,019 INFO : Inserting sll0823
10 Aug 2015 12:58:41,163 INFO : Inserting sll1454
10 Aug 2015 12:58:41,281 INFO : Inserting sll0088
10 Aug 2015 12:58:41,425 INFO : Inserting sll0208
10 Aug 2015 12:58:41,579 INFO : Inserting slr1643
10 Aug 2015 12:58:41,773 INFO : Inserting sll1057
10 Aug 2015 12:58:41,907 INFO : Inserting slr1562
10 Aug 2015 12:58:42,079 INFO : Inserting slr0387
10 Aug 2015 12:58:42,199 INFO : Inserting sll1382
10 Aug 2015 12:58:42,315 INFO : Inserting sll0662
10 Aug 2015 12:58:42,460 INFO : Inserting sll0306
10 Aug 2015 12:58:42,600 INFO : Inserting slr2082
10 Aug 2015 12:58:42,780 INFO : Inserting slr0074
10 Aug 2015 12:58:42,961 INFO : Inserting slr0076
10 Aug 2015 12:58:43,340 INFO : Inserting slr0077
10 Aug 2015 12:58:43,467 INFO : Inserting slr2143
10 Aug 2015 12:58:43,627 INFO : Inserting sll1831
10 Aug 2015 12:58:43,755 INFO : Inserting slr0348
10 Aug 2015 12:58:43,880 INFO : Inserting sll0698
10 Aug 2015 12:58:44,007 INFO : Inserting slr1511
10 Aug 2015 12:58:44,180 INFO : Inserting slr1379
10 Aug 2015 12:58:44,318 INFO : Inserting sll0567
10 Aug 2015 12:58:44,471 INFO : Inserting sll1196
10 Aug 2015 12:58:44,620 INFO : Inserting sll0223
10 Aug 2015 12:58:44,789 INFO : Inserting sll1398
10 Aug 2015 12:58:44,919 INFO : Inserting slr1392
10 Aug 2015 12:58:45,039 INFO : Inserting slr1139
10 Aug 2015 12:58:45,238 INFO : Inserting slr0623
10 Aug 2015 12:58:45,358 INFO : Inserting slr0327
10 Aug 2015 12:58:45,480 INFO : Inserting slr0075
10 Aug 2015 12:58:45,653 INFO : Inserting sll1223
10 Aug 2015 12:58:45,767 INFO : Inserting slr0600
10 Aug 2015 12:58:45,927 INFO : Inserting slr1302
10 Aug 2015 12:58:46,094 INFO : Inserting slr1239
10 Aug 2015 12:58:46,489 INFO : Inserting sll0813
10 Aug 2015 12:58:46,598 INFO : Inserting slr1516
10 Aug 2015 12:58:46,774 INFO : Inserting slr1311
10 Aug 2015 12:58:46,886 INFO : Inserting sll1341
10 Aug 2015 12:58:47,066 INFO : Inserting sll0542
10 Aug 2015 12:58:47,229 INFO : Inserting sll0209
10 Aug 2015 12:58:47,419 INFO : Inserting ssl3044
10 Aug 2015 12:58:47,583 INFO : Inserting sll1621
10 Aug 2015 12:58:47,746 INFO : Inserting sll0248
10 Aug 2015 12:58:47,900 INFO : Inserting ssr3451
10 Aug 2015 12:58:48,005 INFO : Inserting slr1417
10 Aug 2015 12:58:48,107 INFO : Inserting sll0247
10 Aug 2015 12:58:48,211 INFO : Inserting slr0737
10 Aug 2015 12:58:48,313 INFO : Inserting sll0169
10 Aug 2015 12:58:48,433 INFO : Inserting sll0849
10 Aug 2015 12:58:48,601 INFO : Inserting slr2033
10 Aug 2015 12:58:48,796 INFO : Inserting ssl0563
10 Aug 2015 12:58:48,971 INFO : Inserting sll1316
10 Aug 2015 12:58:49,133 INFO : Inserting sll1625
10 Aug 2015 12:58:49,293 INFO : Inserting sll1221
10 Aug 2015 12:58:49,457 INFO : Inserting sll1226
10 Aug 2015 12:58:49,575 INFO : Inserting slr0148
10 Aug 2015 12:58:49,738 INFO : Inserting slr0653
10 Aug 2015 12:58:49,919 INFO : Inserting slr0342
10 Aug 2015 12:58:50,096 INFO : Inserting sll1878
10 Aug 2015 12:58:50,212 INFO : Inserting slr1894
10 Aug 2015 12:58:50,394 INFO : Inserting sll0741
10 Aug 2015 12:58:50,522 INFO : Inserting sll0728
10 Aug 2015 12:58:50,685 INFO : Inserting sll1626
10 Aug 2015 12:58:50,795 INFO : Inserting slr1890
10 Aug 2015 12:58:50,960 INFO : Inserting slr2094
10 Aug 2015 12:58:51,150 INFO : Inserting sll0550
10 Aug 2015 12:58:51,339 INFO : Inserting sll0184
10 Aug 2015 12:58:51,513 INFO : Inserting slr1835
10 Aug 2015 12:58:51,698 INFO : Inserting slr2067
10 Aug 2015 12:58:51,870 INFO : Inserting sll1406
10 Aug 2015 12:58:52,040 INFO : Inserting slr2136
10 Aug 2015 12:58:52,208 INFO : Inserting sll1525
10 Aug 2015 12:58:52,368 INFO : Inserting sll1734
10 Aug 2015 12:58:52,541 INFO : Inserting sll1423
10 Aug 2015 12:58:52,709 INFO : Inserting sll0520
10 Aug 2015 12:58:52,887 INFO : Inserting sll1521
10 Aug 2015 12:58:53,069 INFO : Inserting slr1289
10 Aug 2015 12:58:53,200 INFO : Inserting sll0427
10 Aug 2015 12:58:53,383 INFO : Inserting slr1963
10 Aug 2015 12:58:53,604 INFO : Inserting sll0158
10 Aug 2015 12:58:53,769 INFO : Inserting slr1843
10 Aug 2015 12:58:53,947 INFO : Inserting sll1578
10 Aug 2015 12:58:54,122 INFO : Inserting slr0417
10 Aug 2015 12:58:54,302 INFO : Inserting slr0963
10 Aug 2015 12:58:54,477 INFO : Inserting sll0329
10 Aug 2015 12:58:54,649 INFO : Inserting slr1295
10 Aug 2015 12:58:54,820 INFO : Inserting slr0513
10 Aug 2015 12:58:54,933 INFO : Inserting slr1329
10 Aug 2015 12:58:55,127 INFO : Inserting slr0665
10 Aug 2015 12:58:55,246 INFO : Inserting sll1031
10 Aug 2015 12:58:55,419 INFO : Inserting slr0009
10 Aug 2015 12:58:55,583 INFO : Inserting sll0920
10 Aug 2015 12:58:55,773 INFO : Inserting sll1356
10 Aug 2015 12:58:55,966 INFO : Inserting slr0335
10 Aug 2015 12:58:56,125 INFO : Completed import of Skyline document from 96proteins_Vuorijoki_et_al_2015_2015-08-10_15-31-19.sky.zip
10 Aug 2015 12:58:56,132 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Muth-Pawlak%20-%20SRM_irondepr_2015/@files/export/xar/experiments_and_runs.xar.exploded/Run2602/96proteins_Vuorijoki_et_al_2015_2015-08-10_15-31-19.sky.zip into the system
10 Aug 2015 12:58:56,132 INFO : Done importing xar
10 Aug 2015 12:58:56,170 INFO : Loading pages and webpart properties
10 Aug 2015 12:58:56,212 INFO : Done importing pages and webpart properties
10 Aug 2015 12:58:56,212 INFO : 
10 Aug 2015 12:58:56,212 INFO : Experiment import completed successfully.
10 Aug 2015 12:58:56,212 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
10 Aug 2015 12:58:56,230 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
10 Aug 2015 12:58:56,230 INFO : 
10 Aug 2015 12:58:56,230 INFO : Finishing up experiment copy.
10 Aug 2015 12:58:56,232 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
10 Aug 2015 12:58:56,236 INFO : Updating access URL to point to the new copy of the data.
10 Aug 2015 12:58:56,271 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'